Wall clock time and date at job start Tue Mar 31 2020 23:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46972 * 2 1 4 4 C 1.34231 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00016 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00044 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.50099 * 60.07104 * 6 4 3 8 8 C 1.53127 * 109.50073 * 299.99770 * 6 4 3 9 9 C 1.53114 * 109.15771 * 182.36765 * 8 6 4 10 10 C 1.53032 * 109.28175 * 57.65415 * 9 8 6 11 11 N 1.46845 * 109.52303 * 300.81730 * 10 9 8 12 12 C 1.46902 * 111.00362 * 185.83677 * 11 10 9 13 13 C 1.50706 * 109.46577 * 66.04915 * 12 11 10 14 14 O 1.21274 * 120.00042 * 359.72339 * 13 12 11 15 15 N 1.34777 * 119.99766 * 179.97438 * 13 12 11 16 16 C 1.47067 * 136.05761 * 359.63413 * 15 13 12 17 17 C 1.53234 * 88.08534 * 207.19768 * 16 15 13 18 18 O 1.42904 * 114.01683 * 87.71243 * 17 16 15 19 19 C 1.50696 * 114.33047 * 220.46935 * 17 16 15 20 20 H 1.07999 * 120.00273 * 93.76027 * 19 17 16 21 21 C 1.37876 * 119.99976 * 273.75954 * 19 17 16 22 22 N 1.31520 * 119.99887 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00068 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47243 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47388 * 120.00022 * 23 21 19 26 26 H 1.48499 * 109.47617 * 240.00070 * 23 21 19 27 27 C 1.47060 * 136.05953 * 179.97438 * 15 13 12 28 28 C 1.46849 * 111.19737 * 61.74247 * 11 10 9 29 29 H 1.08999 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46800 * 299.99436 * 1 2 3 31 31 H 1.08996 * 109.47513 * 59.99937 * 1 2 3 32 32 H 1.09000 * 109.46800 * 240.00564 * 2 1 3 33 33 H 1.08996 * 109.47513 * 120.00062 * 2 1 3 34 34 H 1.09001 * 109.52270 * 62.45660 * 8 6 4 35 35 H 1.09004 * 109.57002 * 302.30147 * 8 6 4 36 36 H 1.09002 * 109.50373 * 297.70799 * 9 8 6 37 37 H 1.09004 * 109.50471 * 177.59406 * 9 8 6 38 38 H 1.09004 * 109.46652 * 180.80681 * 10 9 8 39 39 H 1.08997 * 109.46814 * 60.83333 * 10 9 8 40 40 H 1.09000 * 109.47263 * 306.05115 * 12 11 10 41 41 H 1.09001 * 109.47582 * 186.04394 * 12 11 10 42 42 H 1.09007 * 113.46892 * 321.93149 * 16 15 13 43 43 H 1.09006 * 113.46959 * 92.37039 * 16 15 13 44 44 H 0.96697 * 113.99923 * 86.39000 * 18 17 16 45 45 H 0.97008 * 119.99608 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.46952 * 267.63126 * 27 15 13 47 47 H 1.09000 * 113.46498 * 38.00679 * 27 15 13 48 48 H 1.09000 * 109.46006 * 58.27517 * 28 11 10 49 49 H 1.09000 * 109.46486 * 178.24243 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5865 3.4691 0.8909 8 6 3.4486 3.6864 -1.2494 9 6 4.0852 5.0788 -1.2712 10 6 5.6087 4.9384 -1.2395 11 7 6.0099 4.2162 -0.0255 12 6 7.4724 4.1833 0.1085 13 6 7.9874 5.5812 0.3363 14 8 7.2130 6.5136 0.3775 15 7 9.3092 5.7958 0.4893 16 6 10.5221 4.9643 0.5047 17 6 11.1728 6.0208 1.4039 18 8 10.9337 5.8242 2.7990 19 6 12.6156 6.3097 1.0786 20 1 12.8670 7.1236 0.4148 21 6 13.6148 5.5348 1.6284 22 7 13.3086 4.5439 2.4372 23 14 15.4031 5.8924 1.2245 24 1 15.4795 7.0509 0.2985 25 1 16.1392 6.2094 2.4748 26 1 16.0127 4.7017 0.5797 27 6 10.1726 6.9636 0.7203 28 6 5.4490 2.8592 -0.0052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3630 3.7824 -1.2281 35 1 3.7481 3.1349 -2.1406 36 1 3.7536 5.6442 -0.4002 37 1 3.7867 5.6012 -2.1801 38 1 6.0649 5.9284 -1.2405 39 1 5.9409 4.3849 -2.1178 40 1 7.9118 3.7783 -0.8030 41 1 7.7457 3.5531 0.9549 42 1 10.3829 4.0025 0.9983 43 1 10.9980 4.8727 -0.4717 44 1 11.5654 5.2299 3.2264 45 1 14.0116 3.9985 2.8237 46 1 10.5545 7.4096 -0.1981 47 1 9.7362 7.6992 1.3960 48 1 5.7819 2.3154 -0.8893 49 1 5.7890 2.3390 0.8903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646245278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:44 Heat of formation + Delta-G solvation = -129.575435 kcal Electronic energy + Delta-G solvation = -30081.239669 eV Core-core repulsion = 25816.825504 eV Total energy + Delta-G solvation = -4264.414166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98018 -39.77769 -38.77364 -37.25296 -36.72392 -34.00759 -33.76471 -32.20314 -32.09819 -31.15740 -29.36460 -27.17619 -25.17697 -25.11998 -25.03767 -23.22293 -22.97595 -21.33390 -20.12558 -19.88215 -18.25171 -17.90303 -17.44268 -16.86071 -16.77822 -16.34379 -15.62964 -15.37593 -15.27049 -14.98143 -14.66354 -14.36455 -14.22886 -14.02419 -13.80094 -13.60411 -13.31923 -13.17042 -13.04614 -12.79270 -12.52432 -12.34958 -12.25668 -12.02621 -11.95873 -11.70827 -11.57631 -11.50724 -11.10042 -11.05271 -10.97974 -10.91785 -10.84717 -10.62925 -10.48734 -10.40259 -10.26113 -9.58429 -9.14562 -8.79007 -8.45453 -8.24422 -7.83201 -6.41977 -4.52286 1.95799 2.30594 3.12164 3.20747 3.22268 3.25475 3.37198 4.01751 4.17234 4.28432 4.47851 4.54403 4.59142 4.61841 4.80109 4.88141 4.88542 4.95951 5.09081 5.17528 5.30295 5.34980 5.37663 5.39987 5.48333 5.53839 5.56607 5.58931 5.63285 5.69889 5.77652 5.84925 5.92691 6.08872 6.15773 6.20246 6.22862 6.40300 6.48841 6.59844 6.68352 6.95448 7.05194 7.10778 7.49922 7.61542 7.79304 8.50114 8.54401 8.81029 9.19367 9.48510 10.64662 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.002067 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.560514 B =13543.592926 C =14316.158468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.507 6.507 6 C -0.075 4.075 7 H 0.120 0.880 8 C -0.111 4.111 9 C -0.111 4.111 10 C 0.045 3.955 11 N -0.519 5.519 12 C 0.047 3.953 13 C 0.538 3.462 14 O -0.547 6.547 15 N -0.637 5.637 16 C 0.071 3.929 17 C 0.239 3.761 18 O -0.571 6.571 19 C -0.532 4.532 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.109 3.891 28 C 0.073 3.927 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.394 0.606 45 H 0.273 0.727 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 -7.555 -7.198 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.312 3.688 5 O -0.395 6.395 6 C -0.095 4.095 7 H 0.138 0.862 8 C -0.149 4.149 9 C -0.149 4.149 10 C -0.082 4.082 11 N -0.244 5.244 12 C -0.084 4.084 13 C 0.327 3.673 14 O -0.426 6.426 15 N -0.372 5.372 16 C -0.053 4.053 17 C 0.197 3.803 18 O -0.384 6.384 19 C -0.571 4.571 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.736 3.264 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.013 4.013 28 C -0.056 4.056 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.250 0.750 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.628 -6.922 -6.804 22.797 hybrid contribution 1.812 -1.206 -0.760 2.305 sum -18.816 -8.128 -7.564 21.847 Atomic orbital electron populations 1.21805 0.92547 1.02984 1.03599 1.23038 0.95421 0.80270 1.02643 1.86510 1.24539 1.32323 1.83961 1.23742 0.80533 0.92562 0.71952 1.90678 1.60399 1.43222 1.45166 1.21060 0.96096 0.89351 1.02983 0.86168 1.21598 1.01242 0.96573 0.95439 1.21544 0.94642 0.95725 1.02972 1.22350 0.96117 1.00622 0.89129 1.61447 1.08509 1.14912 1.39488 1.21816 0.87773 0.96027 1.02772 1.19747 0.80326 0.90393 0.76826 1.90598 1.54949 1.44790 1.52236 1.49709 1.03873 1.14057 1.69528 1.24168 0.81732 0.97978 1.01382 1.19506 0.91384 0.89104 0.80298 1.86053 1.59209 1.71657 1.21515 1.21472 0.89859 1.16466 1.29272 0.90877 1.25087 1.00255 0.93869 0.93913 1.69276 1.34158 1.18991 1.31440 0.86261 0.83188 0.78487 0.78481 1.19403 1.20609 1.20688 1.23299 0.88269 0.90815 0.98932 1.21870 0.91502 0.89622 1.02559 0.90240 0.91378 0.91456 0.91275 0.91168 0.90349 0.91799 0.90300 0.90915 0.88141 0.95456 0.92149 0.87864 0.91784 0.90140 0.74985 0.91620 0.89816 0.91565 0.93810 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.36 -3.57 10.15 -39.26 -0.40 -3.97 16 4 C 0.47 5.38 7.26 36.01 0.26 5.64 16 5 O -0.51 -7.13 15.74 -18.75 -0.30 -7.43 16 6 C -0.08 -0.80 2.79 -91.69 -0.26 -1.06 16 7 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.11 -1.03 5.21 -26.61 -0.14 -1.17 16 9 C -0.11 -1.16 6.09 -26.66 -0.16 -1.32 16 10 C 0.05 0.60 5.11 -3.84 -0.02 0.58 16 11 N -0.52 -7.50 4.39 -236.11 -1.04 -8.54 16 12 C 0.05 0.74 5.28 -4.97 -0.03 0.71 16 13 C 0.54 10.66 7.76 -10.98 -0.09 10.57 16 14 O -0.55 -12.09 15.11 5.56 0.08 -12.01 16 15 N -0.64 -13.25 3.69 -185.40 -0.68 -13.93 16 16 C 0.07 1.48 7.82 -8.66 -0.07 1.41 16 17 C 0.24 5.66 1.57 -91.39 -0.14 5.52 16 18 O -0.57 -14.69 13.53 -35.23 -0.48 -15.17 16 19 C -0.53 -13.13 8.69 -34.44 -0.30 -13.43 16 20 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 22 N -0.90 -22.49 11.01 55.43 0.61 -21.88 16 23 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 C 0.11 2.36 8.04 -8.52 -0.07 2.29 16 28 C 0.07 0.90 4.04 -3.83 -0.02 0.89 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.60 5.79 -51.93 -0.30 1.30 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 41 H 0.10 1.59 7.98 -51.93 -0.41 1.17 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 44 H 0.39 10.21 6.33 45.56 0.29 10.50 16 45 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 46 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 47 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 48 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 49 H 0.09 1.10 7.99 -51.93 -0.41 0.68 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -29.37 398.46 -9.28 -38.65 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.56 Total: 11.53 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -0.51 Total: 12.58 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -1.11 Total: -44.35 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.09 Total: -38.57 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.37 -9.28 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646245278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.926 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds