Wall clock time and date at job start Tue Mar 31 2020 23:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46972 * 2 1 4 4 C 1.34231 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00016 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00044 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.50099 * 60.07104 * 6 4 3 8 8 C 1.53127 * 109.50073 * 299.99770 * 6 4 3 9 9 C 1.53114 * 109.15771 * 182.36765 * 8 6 4 10 10 C 1.53032 * 109.28175 * 57.65415 * 9 8 6 11 11 N 1.46845 * 109.52303 * 300.81730 * 10 9 8 12 12 C 1.46902 * 111.00362 * 185.83677 * 11 10 9 13 13 C 1.50706 * 109.46577 * 66.04915 * 12 11 10 14 14 O 1.21274 * 120.00042 * 359.72339 * 13 12 11 15 15 N 1.34777 * 119.99766 * 179.97438 * 13 12 11 16 16 C 1.47067 * 136.05761 * 359.63413 * 15 13 12 17 17 C 1.53234 * 88.08534 * 207.19768 * 16 15 13 18 18 O 1.42904 * 114.01683 * 87.71243 * 17 16 15 19 19 C 1.50696 * 114.33047 * 220.46935 * 17 16 15 20 20 H 1.07999 * 120.00273 * 93.76027 * 19 17 16 21 21 C 1.37876 * 119.99976 * 273.75954 * 19 17 16 22 22 N 1.31520 * 119.99887 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00068 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47243 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47388 * 120.00022 * 23 21 19 26 26 H 1.48499 * 109.47617 * 240.00070 * 23 21 19 27 27 C 1.47060 * 136.05953 * 179.97438 * 15 13 12 28 28 C 1.46849 * 111.19737 * 61.74247 * 11 10 9 29 29 H 1.08999 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46800 * 299.99436 * 1 2 3 31 31 H 1.08996 * 109.47513 * 59.99937 * 1 2 3 32 32 H 1.09000 * 109.46800 * 240.00564 * 2 1 3 33 33 H 1.08996 * 109.47513 * 120.00062 * 2 1 3 34 34 H 1.09001 * 109.52270 * 62.45660 * 8 6 4 35 35 H 1.09004 * 109.57002 * 302.30147 * 8 6 4 36 36 H 1.09002 * 109.50373 * 297.70799 * 9 8 6 37 37 H 1.09004 * 109.50471 * 177.59406 * 9 8 6 38 38 H 1.09004 * 109.46652 * 180.80681 * 10 9 8 39 39 H 1.08997 * 109.46814 * 60.83333 * 10 9 8 40 40 H 1.09000 * 109.47263 * 306.05115 * 12 11 10 41 41 H 1.09001 * 109.47582 * 186.04394 * 12 11 10 42 42 H 1.09007 * 113.46892 * 321.93149 * 16 15 13 43 43 H 1.09006 * 113.46959 * 92.37039 * 16 15 13 44 44 H 0.96697 * 113.99923 * 86.39000 * 18 17 16 45 45 H 0.97008 * 119.99608 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.46952 * 267.63126 * 27 15 13 47 47 H 1.09000 * 113.46498 * 38.00679 * 27 15 13 48 48 H 1.09000 * 109.46006 * 58.27517 * 28 11 10 49 49 H 1.09000 * 109.46486 * 178.24243 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5865 3.4691 0.8909 8 6 3.4486 3.6864 -1.2494 9 6 4.0852 5.0788 -1.2712 10 6 5.6087 4.9384 -1.2395 11 7 6.0099 4.2162 -0.0255 12 6 7.4724 4.1833 0.1085 13 6 7.9874 5.5812 0.3363 14 8 7.2130 6.5136 0.3775 15 7 9.3092 5.7958 0.4893 16 6 10.5221 4.9643 0.5047 17 6 11.1728 6.0208 1.4039 18 8 10.9337 5.8242 2.7990 19 6 12.6156 6.3097 1.0786 20 1 12.8670 7.1236 0.4148 21 6 13.6148 5.5348 1.6284 22 7 13.3086 4.5439 2.4372 23 14 15.4031 5.8924 1.2245 24 1 15.4795 7.0509 0.2985 25 1 16.1392 6.2094 2.4748 26 1 16.0127 4.7017 0.5797 27 6 10.1726 6.9636 0.7203 28 6 5.4490 2.8592 -0.0052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3630 3.7824 -1.2281 35 1 3.7481 3.1349 -2.1406 36 1 3.7536 5.6442 -0.4002 37 1 3.7867 5.6012 -2.1801 38 1 6.0649 5.9284 -1.2405 39 1 5.9409 4.3849 -2.1178 40 1 7.9118 3.7783 -0.8030 41 1 7.7457 3.5531 0.9549 42 1 10.3829 4.0025 0.9983 43 1 10.9980 4.8727 -0.4717 44 1 11.5654 5.2299 3.2264 45 1 14.0116 3.9985 2.8237 46 1 10.5545 7.4096 -0.1981 47 1 9.7362 7.6992 1.3960 48 1 5.7819 2.3154 -0.8893 49 1 5.7890 2.3390 0.8903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646245278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:43 Heat of formation + Delta-G solvation = -149.317950 kcal Electronic energy + Delta-G solvation = -30082.095769 eV Core-core repulsion = 25816.825504 eV Total energy + Delta-G solvation = -4265.270265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88943 -41.32605 -40.01896 -38.69106 -37.66951 -35.86718 -34.81520 -34.11877 -32.75154 -32.00116 -30.96232 -28.64463 -26.90098 -26.66338 -25.97248 -24.16004 -23.77062 -22.28619 -21.77514 -20.79013 -19.91532 -19.24046 -18.79507 -17.93096 -17.74547 -17.63504 -17.17478 -16.78418 -16.57036 -16.41685 -15.95517 -15.70435 -15.39759 -15.01268 -14.97403 -14.77715 -14.51903 -14.37064 -14.10411 -13.98221 -13.73531 -13.59877 -13.46403 -13.40689 -12.92687 -12.90575 -12.79033 -12.73610 -12.62518 -12.44533 -12.22740 -12.13542 -11.99588 -11.81226 -11.55141 -11.53718 -11.38862 -11.26670 -10.83881 -10.60365 -10.21642 -9.56124 -9.41044 -8.27286 -6.44152 1.07301 1.45925 1.48023 1.51133 1.60861 1.64823 1.91676 2.40736 2.85321 2.95779 3.42092 3.45736 3.66715 3.75545 3.79100 4.00134 4.05955 4.08335 4.11244 4.16052 4.17436 4.21607 4.33527 4.34495 4.46533 4.53720 4.58708 4.61746 4.65960 4.79572 4.80574 4.84801 4.87701 4.92720 4.93469 4.96340 5.02021 5.13983 5.18045 5.25058 5.35298 5.41839 5.73569 5.81357 5.91760 6.00207 6.62293 6.64255 6.90041 7.19724 7.30398 7.49808 8.78973 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.002067 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.560514 B =13543.592926 C =14316.158468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.476 3.524 5 O -0.538 6.538 6 C -0.073 4.073 7 H 0.125 0.875 8 C -0.102 4.102 9 C -0.105 4.105 10 C 0.044 3.956 11 N -0.531 5.531 12 C 0.055 3.945 13 C 0.533 3.467 14 O -0.572 6.572 15 N -0.641 5.641 16 C 0.086 3.914 17 C 0.216 3.784 18 O -0.587 6.587 19 C -0.550 4.550 20 H 0.075 0.925 21 C 0.031 3.969 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.277 1.277 27 C 0.110 3.890 28 C 0.076 3.924 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.389 0.611 45 H 0.276 0.724 46 H 0.103 0.897 47 H 0.051 0.949 48 H 0.044 0.956 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.601 -8.251 -8.517 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.320 3.680 5 O -0.428 6.428 6 C -0.092 4.092 7 H 0.143 0.857 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.083 4.083 11 N -0.256 5.256 12 C -0.076 4.076 13 C 0.324 3.676 14 O -0.453 6.453 15 N -0.375 5.375 16 C -0.037 4.037 17 C 0.175 3.825 18 O -0.400 6.400 19 C -0.588 4.588 20 H 0.093 0.907 21 C -0.169 4.169 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.190 1.190 25 H -0.209 1.209 26 H -0.203 1.203 27 C -0.013 4.013 28 C -0.051 4.051 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.245 0.755 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.672 -7.617 -8.134 24.370 hybrid contribution 2.065 -0.975 -0.315 2.305 sum -19.607 -8.592 -8.449 23.014 Atomic orbital electron populations 1.21822 0.90314 1.04355 1.03816 1.23312 0.97158 0.79177 1.02535 1.86508 1.23541 1.33702 1.83428 1.23792 0.80851 0.92323 0.71069 1.90669 1.61148 1.44167 1.46766 1.21031 0.94751 0.89313 1.04093 0.85688 1.21565 1.02265 0.95415 0.94724 1.21510 0.92505 0.96619 1.03595 1.22345 0.97981 0.98989 0.88999 1.61439 1.07543 1.16181 1.40448 1.21742 0.89003 0.93162 1.03692 1.20470 0.79584 0.91765 0.75783 1.90584 1.55352 1.46108 1.53254 1.49766 1.04328 1.13511 1.69885 1.23948 0.81389 0.97034 1.01315 1.19807 0.91891 0.91130 0.79693 1.86037 1.59220 1.71722 1.23024 1.21690 0.90598 1.16790 1.29691 0.90671 1.25778 1.03715 0.93673 0.93770 1.69337 1.35208 1.19483 1.31871 0.85306 0.78715 0.78376 0.78015 1.18987 1.20881 1.20262 1.23289 0.88060 0.90635 0.99280 1.21828 0.92778 0.88311 1.02219 0.88305 0.91296 0.91050 0.91262 0.91514 0.88374 0.91297 0.91206 0.88900 0.90999 0.94458 0.90423 0.87487 0.91938 0.88723 0.75511 0.91382 0.87909 0.92997 0.93809 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.05 0.74 6.19 71.98 0.45 1.18 16 3 O -0.36 -6.53 10.15 -51.43 -0.52 -7.06 16 4 C 0.48 10.31 7.26 71.24 0.52 10.83 16 5 O -0.54 -14.76 15.74 21.96 0.35 -14.41 16 6 C -0.07 -1.44 2.79 -11.49 -0.03 -1.47 16 7 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 8 C -0.10 -1.65 5.21 30.67 0.16 -1.49 16 9 C -0.10 -2.00 6.09 30.64 0.19 -1.81 16 10 C 0.04 1.13 5.11 86.32 0.44 1.57 16 11 N -0.53 -14.96 4.39 -900.92 -3.96 -18.92 16 12 C 0.05 1.69 5.28 85.56 0.45 2.14 16 13 C 0.53 21.09 7.76 87.66 0.68 21.77 16 14 O -0.57 -25.56 15.11 -3.01 -0.05 -25.61 16 15 N -0.64 -26.54 3.69 -859.35 -3.17 -29.72 16 16 C 0.09 3.58 7.82 83.08 0.65 4.23 16 17 C 0.22 10.28 1.57 -11.29 -0.02 10.27 16 18 O -0.59 -30.75 13.53 -148.98 -2.02 -32.77 16 19 C -0.55 -26.95 8.69 25.60 0.22 -26.73 16 20 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16 21 C 0.03 1.50 5.40 84.65 0.46 1.95 16 22 N -0.92 -45.91 11.01 21.45 0.24 -45.67 16 23 Si 0.97 38.82 29.54 68.60 2.03 40.84 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 27 C 0.11 4.77 8.04 83.18 0.67 5.44 16 28 C 0.08 1.83 4.04 86.32 0.35 2.18 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.07 2.28 5.79 -2.38 -0.01 2.27 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 41 H 0.11 3.24 7.98 -2.39 -0.02 3.22 16 42 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.09 3.64 8.10 -2.38 -0.02 3.62 16 44 H 0.39 20.63 6.33 -74.06 -0.47 20.16 16 45 H 0.28 13.05 8.31 -92.70 -0.77 12.28 16 46 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 47 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.04 1.05 8.08 -2.39 -0.02 1.03 16 49 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 Total: -1.00 -62.50 398.46 -0.71 -63.21 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.48 Total: 40.51 kcal Atomic # 6 Polarization: 23.67 SS G_CDS: 5.92 Total: 29.59 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -6.90 Total: -94.31 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -2.24 Total: -79.85 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.84 kcal Total: -62.50 -0.71 -63.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646245278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.104 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds