Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.47590 * 2 1 4 4 C 1.34228 * 117.00334 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99600 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99936 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.50403 * 299.92394 * 6 4 3 8 8 C 1.53120 * 109.50193 * 60.00101 * 6 4 3 9 9 C 1.53120 * 109.15835 * 177.63153 * 8 6 4 10 10 C 1.53041 * 109.28215 * 302.34563 * 9 8 6 11 11 N 1.46846 * 109.52003 * 59.17728 * 10 9 8 12 12 C 1.46901 * 110.99738 * 174.15981 * 11 10 9 13 13 C 1.50701 * 109.46921 * 66.04780 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.47055 * 136.05788 * 359.63591 * 15 13 12 17 17 C 1.53757 * 87.88929 * 152.95713 * 16 15 13 18 18 O 1.42892 * 114.39933 * 272.67676 * 17 16 15 19 19 C 1.50708 * 114.26588 * 139.78818 * 17 16 15 20 20 H 1.08001 * 119.99835 * 266.47967 * 19 17 16 21 21 C 1.37879 * 119.99889 * 86.47999 * 19 17 16 22 22 N 1.31516 * 119.99620 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99820 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47146 * 60.00248 * 23 21 19 25 25 H 1.48503 * 109.47074 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47194 * 299.99960 * 23 21 19 27 27 C 1.47065 * 136.05284 * 179.97438 * 15 13 12 28 28 C 1.46839 * 111.20112 * 298.26039 * 11 10 9 29 29 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46607 * 300.00099 * 1 2 3 31 31 H 1.08998 * 109.46749 * 59.99513 * 1 2 3 32 32 H 1.09003 * 109.47324 * 240.00062 * 2 1 3 33 33 H 1.09003 * 109.47330 * 120.00078 * 2 1 3 34 34 H 1.08994 * 109.52534 * 57.73231 * 8 6 4 35 35 H 1.09001 * 109.57639 * 297.56785 * 8 6 4 36 36 H 1.09001 * 109.50461 * 182.40170 * 9 8 6 37 37 H 1.08999 * 109.53597 * 62.30972 * 9 8 6 38 38 H 1.09002 * 109.45916 * 299.16269 * 10 9 8 39 39 H 1.09003 * 109.45322 * 179.19246 * 10 9 8 40 40 H 1.09002 * 109.47401 * 306.04808 * 12 11 10 41 41 H 1.09001 * 109.46874 * 186.04821 * 12 11 10 42 42 H 1.09004 * 113.47070 * 267.68929 * 16 15 13 43 43 H 1.09003 * 113.47263 * 38.13096 * 16 15 13 44 44 H 0.96700 * 114.00225 * 273.58927 * 18 17 16 45 45 H 0.97003 * 119.99026 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46988 * 321.86829 * 27 15 13 47 47 H 1.09005 * 113.46467 * 92.25379 * 27 15 13 48 48 H 1.08998 * 109.46586 * 181.75949 * 28 11 10 49 49 H 1.09001 * 109.46136 * 301.72478 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5868 3.4689 -0.8909 8 6 3.4488 3.6862 1.2493 9 6 4.0855 5.0786 1.2711 10 6 5.6091 4.9382 1.2395 11 7 6.0102 4.2158 0.0255 12 6 7.4727 4.1830 -0.1085 13 6 8.0611 3.3607 1.0090 14 8 7.3337 2.8517 1.8352 15 7 9.3957 3.1900 1.0894 16 6 10.5669 3.6190 0.3105 17 6 11.3935 3.5145 1.6027 18 8 11.3892 4.6978 2.4035 19 6 12.7691 2.9291 1.4123 20 1 12.9292 1.8700 1.5506 21 6 13.8233 3.7456 1.0616 22 7 13.6284 5.0354 0.8937 23 14 15.5285 3.0201 0.8263 24 1 15.4885 2.0020 -0.2540 25 1 16.4784 4.0991 0.4539 26 1 15.9740 2.3825 2.0912 27 6 10.3209 2.4879 1.9916 28 6 5.4492 2.8589 0.0052 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7491 3.1345 2.1400 35 1 2.3632 3.7824 1.2291 36 1 3.7870 5.6011 2.1799 37 1 3.7541 5.6446 0.4005 38 1 5.9410 4.3847 2.1179 39 1 6.0650 5.9283 1.2404 40 1 7.8651 5.1986 -0.0577 41 1 7.7398 3.7377 -1.0669 42 1 10.8654 2.9025 -0.4549 43 1 10.4846 4.6361 -0.0728 44 1 12.0660 5.3427 2.1562 45 1 14.3700 5.6097 0.6466 46 1 10.0289 2.5415 3.0403 47 1 10.5536 1.4726 1.6703 48 1 5.7892 2.3387 -0.8902 49 1 5.7820 2.3151 0.8894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646245279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -128.172591 kcal Electronic energy + Delta-G solvation = -30614.698473 eV Core-core repulsion = 26350.345140 eV Total energy + Delta-G solvation = -4264.353334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89331 -39.96379 -38.73580 -37.11963 -36.56839 -34.05786 -33.62053 -32.22143 -32.00612 -31.05049 -29.40184 -27.06937 -25.17128 -25.05548 -25.01225 -23.10034 -22.93840 -21.20310 -20.24182 -19.75460 -18.32976 -17.75890 -17.46306 -16.73487 -16.71382 -16.35725 -15.71449 -15.24903 -15.22855 -14.89874 -14.77470 -14.41640 -14.14990 -14.02738 -13.70038 -13.53637 -13.18358 -13.00836 -12.88499 -12.66636 -12.65159 -12.17979 -12.15168 -11.98451 -11.91680 -11.63367 -11.57619 -11.25307 -11.07438 -11.03846 -10.84717 -10.79658 -10.69144 -10.51443 -10.49510 -10.29917 -10.26486 -10.05811 -9.41010 -8.82988 -8.47571 -7.97345 -7.83351 -6.43112 -4.53460 2.11248 2.45008 3.09381 3.14405 3.20351 3.22737 3.55085 3.96130 4.15893 4.42559 4.60120 4.63922 4.69380 4.75480 4.79876 4.96828 4.99981 5.00936 5.10544 5.30566 5.39410 5.44424 5.45088 5.50753 5.55323 5.61280 5.64594 5.68550 5.84082 5.88220 5.89841 5.94388 6.04534 6.14778 6.23385 6.29103 6.36819 6.37061 6.48986 6.57700 6.64383 6.96198 7.06345 7.08244 7.60087 7.65387 7.77551 8.47346 8.51207 8.68773 9.17867 9.45359 10.63434 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002253 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.104353 B =12424.830168 C =13128.368529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.503 6.503 6 C -0.072 4.072 7 H 0.112 0.888 8 C -0.110 4.110 9 C -0.110 4.110 10 C 0.035 3.965 11 N -0.512 5.512 12 C 0.043 3.957 13 C 0.503 3.497 14 O -0.562 6.562 15 N -0.631 5.631 16 C 0.070 3.930 17 C 0.241 3.759 18 O -0.571 6.571 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.910 3.090 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.104 3.896 28 C 0.047 3.953 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.394 0.606 45 H 0.275 0.725 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 -1.592 -4.346 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.389 6.389 6 C -0.091 4.091 7 H 0.130 0.870 8 C -0.148 4.148 9 C -0.148 4.148 10 C -0.093 4.093 11 N -0.235 5.235 12 C -0.088 4.088 13 C 0.292 3.708 14 O -0.443 6.443 15 N -0.364 5.364 16 C -0.053 4.053 17 C 0.199 3.801 18 O -0.385 6.385 19 C -0.572 4.572 20 H 0.090 0.910 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.736 3.264 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.018 4.018 28 C -0.081 4.081 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.255 -1.993 -4.101 21.738 hybrid contribution 1.779 -0.697 0.006 1.911 sum -19.476 -2.690 -4.095 20.082 Atomic orbital electron populations 1.21799 0.92629 1.02917 1.03499 1.23019 0.95318 0.80454 1.02643 1.86500 1.24723 1.32183 1.84181 1.23772 0.80401 0.92727 0.72135 1.90692 1.60345 1.43171 1.44707 1.21030 0.96707 0.89142 1.02239 0.87001 1.21550 1.00676 0.96456 0.96075 1.21535 0.94850 0.95968 1.02402 1.22346 0.95495 0.98728 0.92716 1.62354 1.07100 1.16007 1.38035 1.22157 0.87619 1.01434 0.97583 1.21419 0.80449 0.81806 0.87172 1.90536 1.58094 1.52310 1.43408 1.49931 1.03832 1.51252 1.31373 1.24281 0.82326 0.99285 0.99414 1.19563 0.91206 0.83751 0.85579 1.86041 1.61493 1.31332 1.59596 1.21398 0.92422 0.95393 1.48005 0.91017 1.25079 0.99899 0.94819 0.93256 1.69251 1.33222 1.03934 1.47480 0.86357 0.82275 0.78769 0.78952 1.19861 1.20959 1.19833 1.23322 0.86734 0.97061 0.94700 1.22261 0.90653 0.90506 1.04642 0.90299 0.91459 0.91490 0.91287 0.91254 0.91389 0.90654 0.90970 0.91019 0.91650 0.90838 0.87656 0.87971 0.89999 0.91627 0.74951 0.91496 0.91718 0.89805 0.90760 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.07 10.15 -39.25 -0.40 -4.47 16 4 C 0.47 6.26 7.26 36.00 0.26 6.52 16 5 O -0.50 -8.35 15.74 -18.75 -0.30 -8.65 16 6 C -0.07 -0.87 2.79 -91.69 -0.26 -1.13 16 7 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.11 -1.20 5.21 -26.61 -0.14 -1.34 16 9 C -0.11 -1.16 6.09 -26.65 -0.16 -1.32 16 10 C 0.03 0.47 5.09 -3.83 -0.02 0.46 16 11 N -0.51 -7.28 4.86 -236.11 -1.15 -8.42 16 12 C 0.04 0.66 5.69 -4.97 -0.03 0.64 16 13 C 0.50 9.80 7.49 -10.98 -0.08 9.72 16 14 O -0.56 -12.22 12.40 5.56 0.07 -12.15 16 15 N -0.63 -13.08 3.69 -185.07 -0.68 -13.76 16 16 C 0.07 1.46 7.86 -8.38 -0.07 1.39 16 17 C 0.24 5.70 1.58 -91.13 -0.14 5.56 16 18 O -0.57 -14.56 13.54 -35.23 -0.48 -15.04 16 19 C -0.53 -13.20 8.70 -34.44 -0.30 -13.50 16 20 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 22 N -0.90 -22.35 11.01 55.43 0.61 -21.74 16 23 Si 0.91 19.20 29.54 -169.99 -5.02 14.18 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 27 C 0.10 2.29 8.02 -8.52 -0.07 2.22 16 28 C 0.05 0.70 3.55 -3.84 -0.01 0.69 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.10 6.00 -51.93 -0.31 0.78 16 39 H 0.07 0.94 8.06 -51.93 -0.42 0.53 16 40 H 0.11 1.52 8.06 -51.93 -0.42 1.10 16 41 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.63 8.10 -51.93 -0.42 1.20 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.39 10.11 6.32 45.56 0.29 10.40 16 45 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 46 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 48 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 49 H 0.09 1.68 5.30 -51.93 -0.28 1.40 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -29.17 393.46 -9.35 -38.52 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -7.44 Total: 13.80 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.50 Total: 11.80 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -1.22 Total: -43.92 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.10 Total: -40.31 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.17 -9.35 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646245279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.655 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds