Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.47590 * 2 1 4 4 C 1.34228 * 117.00334 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99600 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99936 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.50403 * 299.92394 * 6 4 3 8 8 C 1.53120 * 109.50193 * 60.00101 * 6 4 3 9 9 C 1.53120 * 109.15835 * 177.63153 * 8 6 4 10 10 C 1.53041 * 109.28215 * 302.34563 * 9 8 6 11 11 N 1.46846 * 109.52003 * 59.17728 * 10 9 8 12 12 C 1.46901 * 110.99738 * 174.15981 * 11 10 9 13 13 C 1.50701 * 109.46921 * 66.04780 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.47055 * 136.05788 * 359.63591 * 15 13 12 17 17 C 1.53757 * 87.88929 * 152.95713 * 16 15 13 18 18 O 1.42892 * 114.39933 * 272.67676 * 17 16 15 19 19 C 1.50708 * 114.26588 * 139.78818 * 17 16 15 20 20 H 1.08001 * 119.99835 * 266.47967 * 19 17 16 21 21 C 1.37879 * 119.99889 * 86.47999 * 19 17 16 22 22 N 1.31516 * 119.99620 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99820 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47146 * 60.00248 * 23 21 19 25 25 H 1.48503 * 109.47074 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47194 * 299.99960 * 23 21 19 27 27 C 1.47065 * 136.05284 * 179.97438 * 15 13 12 28 28 C 1.46839 * 111.20112 * 298.26039 * 11 10 9 29 29 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46607 * 300.00099 * 1 2 3 31 31 H 1.08998 * 109.46749 * 59.99513 * 1 2 3 32 32 H 1.09003 * 109.47324 * 240.00062 * 2 1 3 33 33 H 1.09003 * 109.47330 * 120.00078 * 2 1 3 34 34 H 1.08994 * 109.52534 * 57.73231 * 8 6 4 35 35 H 1.09001 * 109.57639 * 297.56785 * 8 6 4 36 36 H 1.09001 * 109.50461 * 182.40170 * 9 8 6 37 37 H 1.08999 * 109.53597 * 62.30972 * 9 8 6 38 38 H 1.09002 * 109.45916 * 299.16269 * 10 9 8 39 39 H 1.09003 * 109.45322 * 179.19246 * 10 9 8 40 40 H 1.09002 * 109.47401 * 306.04808 * 12 11 10 41 41 H 1.09001 * 109.46874 * 186.04821 * 12 11 10 42 42 H 1.09004 * 113.47070 * 267.68929 * 16 15 13 43 43 H 1.09003 * 113.47263 * 38.13096 * 16 15 13 44 44 H 0.96700 * 114.00225 * 273.58927 * 18 17 16 45 45 H 0.97003 * 119.99026 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.46988 * 321.86829 * 27 15 13 47 47 H 1.09005 * 113.46467 * 92.25379 * 27 15 13 48 48 H 1.08998 * 109.46586 * 181.75949 * 28 11 10 49 49 H 1.09001 * 109.46136 * 301.72478 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.5868 3.4689 -0.8909 8 6 3.4488 3.6862 1.2493 9 6 4.0855 5.0786 1.2711 10 6 5.6091 4.9382 1.2395 11 7 6.0102 4.2158 0.0255 12 6 7.4727 4.1830 -0.1085 13 6 8.0611 3.3607 1.0090 14 8 7.3337 2.8517 1.8352 15 7 9.3957 3.1900 1.0894 16 6 10.5669 3.6190 0.3105 17 6 11.3935 3.5145 1.6027 18 8 11.3892 4.6978 2.4035 19 6 12.7691 2.9291 1.4123 20 1 12.9292 1.8700 1.5506 21 6 13.8233 3.7456 1.0616 22 7 13.6284 5.0354 0.8937 23 14 15.5285 3.0201 0.8263 24 1 15.4885 2.0020 -0.2540 25 1 16.4784 4.0991 0.4539 26 1 15.9740 2.3825 2.0912 27 6 10.3209 2.4879 1.9916 28 6 5.4492 2.8589 0.0052 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7491 3.1345 2.1400 35 1 2.3632 3.7824 1.2291 36 1 3.7870 5.6011 2.1799 37 1 3.7541 5.6446 0.4005 38 1 5.9410 4.3847 2.1179 39 1 6.0650 5.9283 1.2404 40 1 7.8651 5.1986 -0.0577 41 1 7.7398 3.7377 -1.0669 42 1 10.8654 2.9025 -0.4549 43 1 10.4846 4.6361 -0.0728 44 1 12.0660 5.3427 2.1562 45 1 14.3700 5.6097 0.6466 46 1 10.0289 2.5415 3.0403 47 1 10.5536 1.4726 1.6703 48 1 5.7892 2.3387 -0.8902 49 1 5.7820 2.3151 0.8894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646245279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -148.533809 kcal Electronic energy + Delta-G solvation = -30615.581402 eV Core-core repulsion = 26350.345140 eV Total energy + Delta-G solvation = -4265.236262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00094 -41.41802 -40.16904 -38.47789 -37.67021 -35.91053 -34.75124 -34.13414 -32.75439 -31.99613 -31.00304 -28.56158 -26.89551 -26.68867 -25.98288 -24.16149 -23.78890 -22.27027 -21.83264 -20.86866 -19.97582 -19.28529 -18.78168 -18.02576 -17.73173 -17.63954 -17.22994 -16.86048 -16.64807 -16.18196 -15.96672 -15.89094 -15.38717 -15.16366 -15.12379 -14.65552 -14.52968 -14.17801 -14.14155 -13.84502 -13.67151 -13.63936 -13.44529 -13.41654 -12.93725 -12.80778 -12.77655 -12.72900 -12.56812 -12.35823 -12.23535 -12.18382 -11.92193 -11.76017 -11.62876 -11.56209 -11.46511 -11.29739 -11.18205 -10.69981 -10.28478 -9.59661 -9.27178 -8.28285 -6.45355 1.06736 1.47700 1.49621 1.53071 1.55280 1.57561 1.96563 2.40042 2.82431 2.93237 3.43654 3.46788 3.66304 3.75188 3.84601 3.96899 4.05036 4.05307 4.08918 4.12998 4.26799 4.31610 4.37162 4.42259 4.49743 4.50379 4.58339 4.67492 4.76127 4.81229 4.83718 4.87779 4.89564 4.90797 4.90877 5.01999 5.05592 5.12424 5.13617 5.22893 5.37390 5.40383 5.71598 5.76951 5.89861 5.90727 6.59616 6.64029 6.88183 7.09946 7.28377 7.48122 8.77415 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002253 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.104353 B =12424.830168 C =13128.368529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.470 3.530 5 O -0.544 6.544 6 C -0.067 4.067 7 H 0.140 0.860 8 C -0.106 4.106 9 C -0.101 4.101 10 C 0.031 3.969 11 N -0.497 5.497 12 C 0.049 3.951 13 C 0.495 3.505 14 O -0.587 6.587 15 N -0.635 5.635 16 C 0.087 3.913 17 C 0.221 3.779 18 O -0.586 6.586 19 C -0.554 4.554 20 H 0.071 0.929 21 C 0.034 3.966 22 N -0.915 5.915 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.276 1.276 27 C 0.103 3.897 28 C 0.051 3.949 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.028 0.972 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.047 0.953 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 -0.846 -5.898 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.314 3.686 5 O -0.434 6.434 6 C -0.086 4.086 7 H 0.158 0.842 8 C -0.143 4.143 9 C -0.139 4.139 10 C -0.097 4.097 11 N -0.219 5.219 12 C -0.082 4.082 13 C 0.286 3.714 14 O -0.470 6.470 15 N -0.369 5.369 16 C -0.036 4.036 17 C 0.179 3.821 18 O -0.399 6.399 19 C -0.592 4.592 20 H 0.089 0.911 21 C -0.167 4.167 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.202 1.202 27 C -0.020 4.020 28 C -0.077 4.077 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.246 0.754 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.827 -1.236 -5.658 23.550 hybrid contribution 2.191 -0.970 0.557 2.460 sum -20.636 -2.206 -5.101 21.371 Atomic orbital electron populations 1.21813 0.89865 1.04405 1.03960 1.23315 0.97436 0.79335 1.02270 1.86496 1.23380 1.33541 1.83513 1.24032 0.80834 0.92741 0.70967 1.90679 1.61367 1.44509 1.46799 1.21037 0.94540 0.88921 1.04076 0.84235 1.21555 1.02269 0.96197 0.94306 1.21533 0.92088 0.95957 1.04307 1.22429 0.98094 0.98308 0.90825 1.62471 1.06124 1.15335 1.37951 1.22308 0.88130 1.01355 0.96455 1.22358 0.79689 0.81587 0.87786 1.90554 1.58475 1.53261 1.44699 1.50020 1.04347 1.51431 1.31072 1.24037 0.81499 0.99841 0.98227 1.19823 0.91697 0.83475 0.87094 1.86025 1.61381 1.31946 1.60549 1.21613 0.93353 0.95594 1.48674 0.91066 1.25747 1.02886 0.95164 0.92913 1.69307 1.34097 1.04635 1.47521 0.85424 0.78338 0.78118 0.78663 1.19231 1.20599 1.20157 1.23291 0.86959 0.97583 0.94193 1.22106 0.92892 0.90281 1.02404 0.88313 0.91135 0.90818 0.91408 0.92056 0.93765 0.87968 0.89282 0.88793 0.95368 0.89860 0.86200 0.86128 0.88869 0.91172 0.75403 0.91251 0.93445 0.88535 0.91276 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.57 10.15 -51.40 -0.52 -8.09 16 4 C 0.47 12.39 7.26 71.23 0.52 12.91 16 5 O -0.54 -18.56 15.74 21.96 0.35 -18.22 16 6 C -0.07 -1.52 2.79 -11.49 -0.03 -1.56 16 7 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 8 C -0.11 -2.12 5.21 30.67 0.16 -1.96 16 9 C -0.10 -1.87 6.09 30.65 0.19 -1.69 16 10 C 0.03 0.82 5.09 86.33 0.44 1.26 16 11 N -0.50 -13.51 4.86 -900.92 -4.38 -17.89 16 12 C 0.05 1.44 5.69 85.56 0.49 1.93 16 13 C 0.50 19.53 7.49 87.66 0.66 20.19 16 14 O -0.59 -26.50 12.40 -3.03 -0.04 -26.54 16 15 N -0.64 -26.56 3.69 -858.32 -3.16 -29.73 16 16 C 0.09 3.59 7.86 83.27 0.65 4.24 16 17 C 0.22 10.55 1.58 -11.12 -0.02 10.53 16 18 O -0.59 -30.46 13.54 -148.98 -2.02 -32.48 16 19 C -0.55 -27.48 8.70 25.60 0.22 -27.25 16 20 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 21 C 0.03 1.63 5.39 84.65 0.46 2.09 16 22 N -0.91 -45.30 11.01 21.45 0.24 -45.06 16 23 Si 0.97 38.92 29.54 68.60 2.03 40.94 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 27 C 0.10 4.61 8.02 83.17 0.67 5.28 16 28 C 0.05 1.52 3.55 86.33 0.31 1.83 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.03 0.96 6.00 -2.39 -0.01 0.95 16 39 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 40 H 0.12 3.24 8.06 -2.39 -0.02 3.22 16 41 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.62 8.10 -2.38 -0.02 3.60 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.39 20.41 6.32 -74.06 -0.47 19.94 16 45 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 46 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.10 4.00 8.10 -2.38 -0.02 3.98 16 48 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 49 H 0.05 1.93 5.30 -2.39 -0.01 1.92 16 Total: -1.00 -64.50 393.46 -1.14 -65.64 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: 0.48 Total: 43.02 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 5.89 Total: 28.40 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -7.30 Total: -92.68 kcal Atomic # 8 Polarization: -83.10 SS G_CDS: -2.23 Total: -85.33 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -64.50 -1.14 -65.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646245279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.898 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds