Wall clock time and date at job start Tue Mar 31 2020 23:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 111.00017 * 2 1 4 4 C 1.50704 * 109.47192 * 293.95549 * 3 2 1 5 5 H 1.08005 * 119.99716 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99972 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99751 * 179.71981 * 6 4 3 8 8 Si 1.86794 * 120.00165 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.47030 * 269.72635 * 8 6 4 10 10 H 1.48504 * 109.47229 * 29.72098 * 8 6 4 11 11 H 1.48496 * 109.47651 * 149.72657 * 8 6 4 12 12 C 1.46897 * 110.99635 * 123.95254 * 2 1 3 13 13 C 1.52997 * 109.46783 * 160.37513 * 12 2 1 14 14 H 1.09001 * 109.47443 * 59.54286 * 13 12 2 15 15 O 1.42900 * 109.47219 * 299.54446 * 13 12 2 16 16 C 1.53003 * 109.47119 * 179.54324 * 13 12 2 17 17 N 1.46897 * 109.47157 * 184.99951 * 16 13 12 18 18 C 1.46900 * 111.00216 * 180.02562 * 17 16 13 19 19 H 1.08996 * 109.47031 * 34.99836 * 18 17 16 20 20 C 1.52992 * 109.47392 * 155.00273 * 18 17 16 21 21 H 1.09001 * 110.43706 * 171.93971 * 20 18 17 22 22 C 1.54815 * 110.49272 * 49.24998 * 20 18 17 23 23 C 1.54987 * 102.09568 * 220.44707 * 22 20 18 24 24 O 1.44381 * 103.49326 * 37.01768 * 23 22 20 25 25 C 1.43745 * 106.97612 * 319.94630 * 24 23 22 26 26 C 1.52998 * 109.47008 * 275.00257 * 18 17 16 27 27 F 1.39902 * 109.47440 * 65.40036 * 26 18 17 28 28 F 1.39900 * 109.47229 * 185.39912 * 26 18 17 29 29 F 1.39906 * 109.47393 * 305.39899 * 26 18 17 30 30 H 1.09003 * 109.47159 * 65.03218 * 1 2 3 31 31 H 1.08992 * 109.47088 * 185.03294 * 1 2 3 32 32 H 1.09008 * 109.47078 * 305.03715 * 1 2 3 33 33 H 1.08997 * 109.46776 * 173.95330 * 3 2 1 34 34 H 1.08998 * 109.46898 * 53.95362 * 3 2 1 35 35 H 0.97005 * 119.99636 * 180.27512 * 7 6 4 36 36 H 1.08993 * 109.47526 * 280.37572 * 12 2 1 37 37 H 1.08998 * 109.47345 * 40.37892 * 12 2 1 38 38 H 0.96699 * 114.00303 * 299.99930 * 15 13 12 39 39 H 1.09000 * 109.47302 * 304.99945 * 16 13 12 40 40 H 1.09000 * 109.46895 * 65.00305 * 16 13 12 41 41 H 1.00895 * 111.00317 * 303.95790 * 17 16 13 42 42 H 1.09004 * 110.89930 * 338.64386 * 22 20 18 43 43 H 1.08995 * 110.90976 * 102.24169 * 22 20 18 44 44 H 1.09005 * 110.61808 * 278.52210 * 23 22 20 45 45 H 1.09000 * 110.75776 * 155.58352 * 23 22 20 46 46 H 1.09004 * 109.87246 * 267.08537 * 25 24 23 47 47 H 1.08995 * 110.00288 * 146.00604 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 1.7196 3.9369 -2.6643 8 14 3.0009 4.2758 -0.2314 9 1 2.0644 4.9858 0.6766 10 1 3.8189 3.3162 0.5531 11 1 3.8930 5.2621 -0.8921 12 6 1.9954 -0.7660 1.1376 13 6 3.4466 -1.1618 0.8581 14 1 4.0458 -0.2637 0.7078 15 8 3.5012 -1.9730 -0.3171 16 6 3.9985 -1.9498 2.0478 17 7 5.4250 -2.2266 1.8325 18 6 5.9900 -2.9841 2.9571 19 1 5.2396 -3.6732 3.3445 20 6 7.2095 -3.7743 2.4785 21 1 7.7249 -4.2284 3.3248 22 6 8.1709 -2.8581 1.6830 23 6 8.6134 -3.7828 0.5206 24 8 7.4174 -4.5299 0.2105 25 6 6.7881 -4.8530 1.4618 26 6 6.4122 -2.0154 4.0636 27 9 5.2796 -1.3820 4.5862 28 9 7.0614 -2.7235 5.0807 29 9 7.2819 -1.0549 3.5358 30 1 -0.3633 0.4338 -0.9316 31 1 -0.3633 -1.0236 0.0901 32 1 -0.3634 0.5900 0.8415 33 1 3.0798 1.3443 0.1083 34 1 1.5612 1.9273 0.8309 35 1 1.9979 4.8517 -2.8280 36 1 1.9529 -0.1540 2.0385 37 1 1.3948 -1.6643 1.2799 38 1 2.9893 -2.7910 -0.2546 39 1 3.8754 -1.3652 2.9594 40 1 3.4564 -2.8906 2.1434 41 1 5.5716 -2.7118 0.9601 42 1 7.6472 -1.9804 1.3040 43 1 9.0247 -2.5660 2.2943 44 1 9.4106 -4.4520 0.8446 45 1 8.9330 -3.1954 -0.3402 46 1 7.1215 -5.8334 1.8020 47 1 5.7043 -4.8498 1.3458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646515990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:46 Heat of formation + Delta-G solvation = -235.301381 kcal Electronic energy + Delta-G solvation = -32018.146183 eV Core-core repulsion = 27207.290656 eV Total energy + Delta-G solvation = -4810.855527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.26489 -47.82576 -47.65808 -40.22907 -38.35018 -36.55689 -35.41216 -32.69333 -32.38597 -30.42215 -29.36296 -28.23169 -27.80732 -25.50489 -23.65594 -23.05932 -22.90442 -21.63725 -20.73952 -19.97951 -18.74653 -18.55019 -17.93340 -16.95887 -16.71995 -16.55637 -16.08291 -15.93248 -15.47410 -15.09366 -14.87402 -14.63242 -14.53947 -14.45518 -14.30730 -14.14165 -13.93594 -13.85017 -13.83076 -13.37113 -13.19774 -13.10476 -12.75678 -12.55233 -12.34785 -12.20446 -11.84596 -11.56038 -11.53429 -11.44921 -11.34406 -11.16549 -11.11821 -10.74595 -10.63658 -10.08535 -10.04271 -9.84647 -9.69356 -9.19006 -8.97373 -8.52760 -7.35071 -6.00394 -3.97083 2.46906 3.31556 3.32541 3.39712 3.42385 3.44478 3.52341 3.64311 4.05441 4.14963 4.34635 4.46406 4.50098 4.57091 4.64756 4.74104 4.82490 4.86220 4.95500 5.07545 5.16128 5.23500 5.24718 5.32238 5.38251 5.47325 5.51644 5.54741 5.63279 5.89812 5.91672 6.00488 6.24820 6.27729 6.43790 6.48648 6.68119 6.85230 6.93025 6.99187 7.63592 7.86841 8.01452 8.05583 8.70150 9.08640 9.61489 11.12915 Molecular weight = 340.18amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003174 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.971274 B = 8819.018445 C = 9110.852142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.537 6.537 16 C 0.016 3.984 17 N -0.669 5.669 18 C 0.053 3.947 19 H 0.090 0.910 20 C -0.132 4.132 21 H 0.102 0.898 22 C -0.155 4.155 23 C 0.047 3.953 24 O -0.370 6.370 25 C 0.054 3.946 26 C 0.459 3.541 27 F -0.182 7.182 28 F -0.188 7.188 29 F -0.169 7.169 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.012 0.988 33 H 0.029 0.971 34 H -0.019 1.019 35 H 0.263 0.737 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.361 0.639 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.373 0.627 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.653 -19.992 15.215 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.211 1.211 12 C -0.106 4.106 13 C 0.056 3.944 14 H 0.128 0.872 15 O -0.340 6.340 16 C -0.114 4.114 17 N -0.305 5.305 18 C -0.060 4.060 19 H 0.107 0.893 20 C -0.151 4.151 21 H 0.120 0.880 22 C -0.193 4.193 23 C -0.029 4.029 24 O -0.288 6.288 25 C -0.023 4.023 26 C 0.404 3.596 27 F -0.164 7.164 28 F -0.169 7.169 29 F -0.150 7.150 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.047 0.953 34 H -0.001 1.001 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.206 0.794 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.198 0.802 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.342 -18.984 14.490 26.883 hybrid contribution -0.412 0.027 2.125 2.164 sum 11.930 -18.957 16.614 27.888 Atomic orbital electron populations 1.22235 0.88138 0.98863 1.01609 1.61867 1.06977 1.16489 1.39037 1.20252 0.95327 0.83886 0.96972 1.21015 1.35423 0.97057 1.00884 0.90146 1.24887 0.95745 0.97377 0.95302 1.69896 1.47024 1.13370 1.23738 0.86893 0.80681 0.80137 0.82227 1.20463 1.19112 1.21100 1.22709 0.95859 0.98421 0.93648 1.21936 0.95357 0.93957 0.83143 0.87156 1.86736 1.73343 1.35791 1.38089 1.23046 0.86791 0.99929 1.01589 1.60183 1.16175 1.49895 1.04275 1.22506 0.98784 0.92365 0.92357 0.89262 1.22831 0.95150 0.96613 1.00547 0.87984 1.23386 0.99230 0.99811 0.96879 1.23609 0.87792 0.93021 0.98525 1.88947 1.38351 1.74689 1.26836 1.23131 0.98641 0.96694 0.83881 1.20558 0.75144 0.81421 0.82502 1.93156 1.51380 1.83794 1.88037 1.93154 1.82319 1.78532 1.62939 1.93200 1.70102 1.65688 1.86012 0.90323 0.93659 0.96956 0.95262 1.00092 0.92720 0.94843 0.91808 0.79385 0.89256 0.94325 0.80223 0.87428 0.89827 0.92278 0.88319 0.91514 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.31 60.07 0.56 1.31 16 2 N -0.52 -10.77 4.56 -244.37 -1.11 -11.89 16 3 C 0.16 3.98 3.62 -4.98 -0.02 3.96 16 4 C -0.51 -14.65 9.13 -34.44 -0.31 -14.97 16 5 H 0.08 2.54 7.34 -52.48 -0.39 2.15 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 8 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 C 0.02 0.37 4.66 -3.83 -0.02 0.36 16 13 C 0.12 1.72 3.27 -26.73 -0.09 1.63 16 14 H 0.11 2.01 6.77 -51.93 -0.35 1.66 16 15 O -0.54 -8.15 12.73 -35.23 -0.45 -8.59 16 16 C 0.02 0.17 5.09 -3.82 -0.02 0.15 16 17 N -0.67 -6.92 4.87 -106.73 -0.52 -7.44 16 18 C 0.05 0.44 1.73 -67.72 -0.12 0.32 16 19 H 0.09 0.59 7.80 -51.93 -0.40 0.19 16 20 C -0.13 -0.93 2.76 -89.09 -0.25 -1.18 16 21 H 0.10 0.60 7.49 -51.93 -0.39 0.21 16 22 C -0.16 -1.25 4.94 -24.73 -0.12 -1.37 16 23 C 0.05 0.37 7.72 38.21 0.29 0.66 16 24 O -0.37 -3.63 11.50 -35.23 -0.41 -4.04 16 25 C 0.05 0.38 6.53 37.73 0.25 0.63 16 26 C 0.46 4.70 2.83 37.16 0.11 4.80 16 27 F -0.18 -2.13 15.25 2.25 0.03 -2.10 16 28 F -0.19 -1.80 16.48 2.25 0.04 -1.77 16 29 F -0.17 -2.00 15.21 2.25 0.03 -1.97 16 30 H 0.08 1.66 7.01 -51.93 -0.36 1.29 16 31 H 0.04 0.70 7.85 -51.93 -0.41 0.30 16 32 H 0.01 0.22 8.08 -51.92 -0.42 -0.20 16 33 H 0.03 0.74 5.67 -51.93 -0.29 0.44 16 34 H -0.02 -0.46 7.50 -51.93 -0.39 -0.85 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 37 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 38 H 0.36 4.00 9.05 45.56 0.41 4.42 16 39 H 0.09 1.03 6.18 -51.93 -0.32 0.71 16 40 H 0.04 0.34 8.05 -51.93 -0.42 -0.08 16 41 H 0.37 3.95 6.43 -39.29 -0.25 3.70 16 42 H 0.11 1.10 6.30 -51.93 -0.33 0.77 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.55 7.32 -51.93 -0.38 0.17 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -33.18 375.31 -6.83 -40.00 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.37 Total: 3.86 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.17 Total: -1.77 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.86 Total: -46.63 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.85 Total: -12.63 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.18 -6.83 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646515990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.301 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds