Wall clock time and date at job start Wed Apr 1 2020 00:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99940 * 2 1 4 4 O 1.20821 * 120.00646 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52995 * 112.85105 * 173.79634 * 5 3 2 7 7 O 1.42904 * 109.46034 * 182.58706 * 6 5 3 8 8 C 1.53037 * 109.46010 * 302.56547 * 6 5 3 9 9 C 1.53197 * 109.30979 * 181.38314 * 8 6 5 10 10 N 1.46923 * 108.77984 * 305.36407 * 9 8 6 11 11 C 1.34774 * 120.63132 * 233.59012 * 10 9 8 12 12 O 1.21580 * 120.00060 * 5.21023 * 11 10 9 13 13 N 1.34779 * 119.99748 * 185.48824 * 11 10 9 14 14 C 1.46498 * 120.00010 * 174.75646 * 13 11 10 15 15 C 1.50697 * 109.47242 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99841 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00408 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47413 * 89.99819 * 19 17 15 21 21 H 1.48502 * 109.46953 * 209.99490 * 19 17 15 22 22 H 1.48500 * 109.47324 * 329.99699 * 19 17 15 23 23 C 1.46932 * 118.73496 * 53.85987 * 10 9 8 24 24 C 1.53042 * 109.45881 * 62.63211 * 6 5 3 25 25 C 1.53785 * 113.61387 * 304.99596 * 5 3 2 26 26 C 1.53960 * 87.01889 * 89.22513 * 25 5 3 27 27 C 1.53774 * 87.10949 * 25.36286 * 26 25 5 28 28 H 1.08994 * 109.47048 * 59.99945 * 1 2 3 29 29 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46666 * 300.00157 * 1 2 3 31 31 H 0.96703 * 113.99789 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.49692 * 61.43332 * 8 6 5 33 33 H 1.08996 * 109.52260 * 301.35013 * 8 6 5 34 34 H 1.08998 * 109.58528 * 185.57321 * 9 8 6 35 35 H 1.09002 * 109.70282 * 65.22695 * 9 8 6 36 36 H 0.96998 * 120.00338 * 354.76245 * 13 11 10 37 37 H 1.09005 * 109.46934 * 300.00347 * 14 13 11 38 38 H 1.08997 * 109.47219 * 59.99872 * 14 13 11 39 39 H 0.96998 * 120.00240 * 180.02562 * 18 17 15 40 40 H 1.08992 * 109.58674 * 65.93186 * 23 10 9 41 41 H 1.08998 * 109.58341 * 186.35530 * 23 10 9 42 42 H 1.08996 * 109.49959 * 298.56503 * 24 6 5 43 43 H 1.09001 * 109.49887 * 58.63229 * 24 6 5 44 44 H 1.09002 * 113.61504 * 203.74664 * 25 5 3 45 45 H 1.09007 * 113.61317 * 334.65089 * 25 5 3 46 46 H 1.08997 * 113.53717 * 270.80663 * 26 25 5 47 47 H 1.08997 * 113.65923 * 139.93260 * 26 25 5 48 48 H 1.09000 * 113.61428 * 220.08731 * 27 26 25 49 49 H 1.09010 * 113.61692 * 89.18724 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0864 2.7056 -0.1519 7 8 5.5145 2.6902 -0.2027 8 6 3.5367 3.3129 -1.4445 9 6 4.0869 4.7329 -1.6112 10 7 3.7755 5.5059 -0.4012 11 6 3.1318 6.6868 -0.4876 12 8 2.7193 7.0772 -1.5626 13 7 2.9503 7.4377 0.6168 14 6 2.3540 8.7713 0.5061 15 6 2.2630 9.3961 1.8744 16 1 2.6139 8.8539 2.7401 17 6 1.7309 10.6595 2.0213 18 7 1.3032 11.3196 0.9673 19 14 1.6176 11.4337 3.7175 20 1 2.8613 12.1950 3.9985 21 1 0.4528 12.3538 3.7648 22 1 1.4484 10.3681 4.7378 23 6 4.1845 4.9699 0.9043 24 6 3.6281 3.5447 1.0432 25 6 4.2234 0.5003 1.1553 26 6 4.2367 -0.7230 0.2206 27 6 4.2361 0.2711 -0.9527 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.9140 3.5656 -0.2993 32 1 2.4483 3.3479 -1.3959 33 1 3.8435 2.7018 -2.2933 34 1 3.6223 5.2055 -2.4765 35 1 5.1671 4.6942 -1.7522 36 1 3.2145 7.0952 1.4850 37 1 2.9751 9.3947 -0.1371 38 1 1.3555 8.6883 0.0771 39 1 0.9292 12.2086 1.0707 40 1 5.2724 4.9480 0.9657 41 1 3.7841 5.5990 1.6992 42 1 2.5389 3.5775 1.0684 43 1 4.0000 3.0981 1.9653 44 1 5.2182 0.8629 1.4141 45 1 3.5763 0.3799 2.0243 46 1 3.3315 -1.3272 0.2815 47 1 5.1483 -1.3164 0.2897 48 1 3.5995 -0.0340 -1.7831 49 1 5.2345 0.5710 -1.2714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680660250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:14 Heat of formation + Delta-G solvation = -129.695620 kcal Electronic energy + Delta-G solvation = -31777.226660 eV Core-core repulsion = 27512.807283 eV Total energy + Delta-G solvation = -4264.419377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81569 -40.01302 -38.92294 -37.44333 -36.68071 -34.91435 -34.22381 -32.45321 -31.44800 -31.03523 -28.51091 -27.59271 -26.61123 -26.14870 -24.05230 -23.30432 -22.51322 -22.08044 -20.54085 -19.82707 -19.01915 -18.31786 -17.61209 -16.74898 -16.65695 -16.35935 -15.96641 -15.78007 -15.60391 -15.01299 -14.90802 -14.73687 -14.58224 -13.93506 -13.87325 -13.62631 -13.48357 -13.12532 -12.89014 -12.67059 -12.52441 -12.44653 -12.21038 -12.03005 -11.96625 -11.72392 -11.63803 -11.43573 -11.34457 -11.09020 -10.93789 -10.87169 -10.84216 -10.81834 -10.49842 -10.26795 -10.07480 -9.85435 -9.35021 -9.29694 -8.70241 -8.37823 -7.69133 -6.12626 -4.19067 1.86698 2.26431 3.18565 3.26277 3.32573 3.35497 3.85165 3.93441 4.05764 4.20884 4.25267 4.33465 4.48784 4.57324 4.71506 4.81420 4.82075 4.87309 4.91655 5.04816 5.08015 5.21571 5.23339 5.23769 5.30938 5.41248 5.50493 5.55249 5.61401 5.64689 5.66562 5.71199 5.78072 5.80056 5.95467 6.04862 6.12827 6.14582 6.37862 6.79816 7.15276 7.36096 7.51664 7.54927 7.57131 7.61327 7.88780 8.05201 8.78856 8.93652 9.35566 9.50845 10.97691 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002734 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.756705 B =10239.769589 C =10624.687231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.353 6.353 3 C 0.484 3.516 4 O -0.486 6.486 5 C -0.075 4.075 6 C 0.170 3.830 7 O -0.555 6.555 8 C -0.168 4.168 9 C 0.131 3.869 10 N -0.638 5.638 11 C 0.699 3.301 12 O -0.598 6.598 13 N -0.729 5.729 14 C 0.266 3.734 15 C -0.541 4.541 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.112 3.888 24 C -0.168 4.168 25 C -0.111 4.111 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.382 0.618 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.385 0.615 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.265 0.735 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -27.810 -0.515 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.326 3.674 4 O -0.372 6.372 5 C -0.077 4.077 6 C 0.130 3.870 7 O -0.363 6.363 8 C -0.207 4.207 9 C 0.007 3.993 10 N -0.378 5.378 11 C 0.400 3.600 12 O -0.477 6.477 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.012 4.012 24 C -0.207 4.207 25 C -0.148 4.148 26 C -0.179 4.179 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.220 0.780 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.005 -27.590 -1.300 28.266 hybrid contribution -0.248 1.055 1.304 1.696 sum 5.757 -26.535 0.005 27.153 Atomic orbital electron populations 1.23317 0.76092 1.03716 1.02910 1.86482 1.23397 1.32932 1.84120 1.22743 0.90525 0.81509 0.72609 1.90697 1.66765 1.35779 1.43930 1.21471 0.87420 0.95934 1.02840 1.20385 0.80899 0.90989 0.94763 1.86347 1.18243 1.35253 1.96478 1.22744 1.03873 0.96667 0.97388 1.21279 0.98959 0.90067 0.89004 1.47302 1.62765 1.21299 1.06411 1.16034 0.78866 0.79779 0.85304 1.90852 1.56259 1.72608 1.27964 1.45869 1.65969 1.19586 1.06871 1.18978 0.93526 0.75807 0.97170 1.21214 1.42653 1.01382 0.92666 0.92053 1.24941 0.94929 0.96820 0.97324 1.69980 1.40344 1.12916 1.29048 0.86420 0.77733 0.79157 0.83604 1.20482 1.21019 1.19781 1.21612 0.98971 0.94337 0.86269 1.22818 1.04354 0.95321 0.98168 1.22898 1.01685 0.95074 0.95133 1.22964 1.02873 0.96473 0.95595 1.22857 1.01735 0.93939 0.96285 0.91700 0.88015 0.91712 0.76791 0.88835 0.90615 0.88460 0.92306 0.78031 0.95832 0.95710 0.92485 0.91733 0.89587 0.88458 0.90493 0.87624 0.91251 0.89132 0.90861 0.91159 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.31 8.67 -39.25 -0.34 -3.65 16 3 C 0.48 5.42 6.60 36.01 0.24 5.66 16 4 O -0.49 -6.94 11.85 -18.75 -0.22 -7.16 16 5 C -0.08 -0.71 0.46 -154.85 -0.07 -0.78 16 6 C 0.17 1.76 0.35 -90.58 -0.03 1.73 16 7 O -0.55 -4.97 10.94 -35.23 -0.39 -5.36 16 8 C -0.17 -2.03 4.73 -26.61 -0.13 -2.15 16 9 C 0.13 1.79 6.01 -3.71 -0.02 1.76 16 10 N -0.64 -10.25 2.97 -178.23 -0.53 -10.78 16 11 C 0.70 15.28 8.29 -86.92 -0.72 14.56 16 12 O -0.60 -15.56 15.77 5.29 0.08 -15.48 16 13 N -0.73 -16.42 5.46 -66.42 -0.36 -16.78 16 14 C 0.27 7.36 5.43 -5.20 -0.03 7.33 16 15 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.11 1.40 5.99 -3.48 -0.02 1.38 16 24 C -0.17 -1.94 4.78 -26.39 -0.13 -2.06 16 25 C -0.11 -0.87 6.51 -25.82 -0.17 -1.04 16 26 C -0.14 -0.98 7.64 -25.83 -0.20 -1.18 16 27 C -0.11 -0.88 6.65 -25.92 -0.17 -1.05 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.38 2.95 5.83 45.56 0.27 3.21 16 32 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 33 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 34 H 0.10 1.57 7.00 -51.93 -0.36 1.21 16 35 H 0.06 0.65 7.03 -51.93 -0.37 0.28 16 36 H 0.38 7.53 5.81 -40.82 -0.24 7.29 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 0.64 7.02 -51.93 -0.36 0.28 16 41 H 0.09 1.12 5.65 -51.93 -0.29 0.83 16 42 H 0.10 1.40 5.86 -51.93 -0.30 1.09 16 43 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 44 H 0.11 0.82 7.45 -51.93 -0.39 0.44 16 45 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.09 0.64 6.86 -51.93 -0.36 0.28 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 49 H 0.11 0.83 7.26 -51.92 -0.38 0.46 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -34.94 376.66 -7.97 -42.90 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.81 Total: 8.53 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.80 Total: 11.80 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.15 Total: -53.40 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.86 Total: -31.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.94 -7.97 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680660250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.793 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds