Wall clock time and date at job start Wed Apr 1 2020 00:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99940 * 2 1 4 4 O 1.20821 * 120.00646 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52995 * 112.85105 * 173.79634 * 5 3 2 7 7 O 1.42904 * 109.46034 * 182.58706 * 6 5 3 8 8 C 1.53037 * 109.46010 * 302.56547 * 6 5 3 9 9 C 1.53197 * 109.30979 * 181.38314 * 8 6 5 10 10 N 1.46923 * 108.77984 * 305.36407 * 9 8 6 11 11 C 1.34774 * 120.63132 * 233.59012 * 10 9 8 12 12 O 1.21580 * 120.00060 * 5.21023 * 11 10 9 13 13 N 1.34779 * 119.99748 * 185.48824 * 11 10 9 14 14 C 1.46498 * 120.00010 * 174.75646 * 13 11 10 15 15 C 1.50697 * 109.47242 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99841 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00408 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47413 * 89.99819 * 19 17 15 21 21 H 1.48502 * 109.46953 * 209.99490 * 19 17 15 22 22 H 1.48500 * 109.47324 * 329.99699 * 19 17 15 23 23 C 1.46932 * 118.73496 * 53.85987 * 10 9 8 24 24 C 1.53042 * 109.45881 * 62.63211 * 6 5 3 25 25 C 1.53785 * 113.61387 * 304.99596 * 5 3 2 26 26 C 1.53960 * 87.01889 * 89.22513 * 25 5 3 27 27 C 1.53774 * 87.10949 * 25.36286 * 26 25 5 28 28 H 1.08994 * 109.47048 * 59.99945 * 1 2 3 29 29 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46666 * 300.00157 * 1 2 3 31 31 H 0.96703 * 113.99789 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.49692 * 61.43332 * 8 6 5 33 33 H 1.08996 * 109.52260 * 301.35013 * 8 6 5 34 34 H 1.08998 * 109.58528 * 185.57321 * 9 8 6 35 35 H 1.09002 * 109.70282 * 65.22695 * 9 8 6 36 36 H 0.96998 * 120.00338 * 354.76245 * 13 11 10 37 37 H 1.09005 * 109.46934 * 300.00347 * 14 13 11 38 38 H 1.08997 * 109.47219 * 59.99872 * 14 13 11 39 39 H 0.96998 * 120.00240 * 180.02562 * 18 17 15 40 40 H 1.08992 * 109.58674 * 65.93186 * 23 10 9 41 41 H 1.08998 * 109.58341 * 186.35530 * 23 10 9 42 42 H 1.08996 * 109.49959 * 298.56503 * 24 6 5 43 43 H 1.09001 * 109.49887 * 58.63229 * 24 6 5 44 44 H 1.09002 * 113.61504 * 203.74664 * 25 5 3 45 45 H 1.09007 * 113.61317 * 334.65089 * 25 5 3 46 46 H 1.08997 * 113.53717 * 270.80663 * 26 25 5 47 47 H 1.08997 * 113.65923 * 139.93260 * 26 25 5 48 48 H 1.09000 * 113.61428 * 220.08731 * 27 26 25 49 49 H 1.09010 * 113.61692 * 89.18724 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0864 2.7056 -0.1519 7 8 5.5145 2.6902 -0.2027 8 6 3.5367 3.3129 -1.4445 9 6 4.0869 4.7329 -1.6112 10 7 3.7755 5.5059 -0.4012 11 6 3.1318 6.6868 -0.4876 12 8 2.7193 7.0772 -1.5626 13 7 2.9503 7.4377 0.6168 14 6 2.3540 8.7713 0.5061 15 6 2.2630 9.3961 1.8744 16 1 2.6139 8.8539 2.7401 17 6 1.7309 10.6595 2.0213 18 7 1.3032 11.3196 0.9673 19 14 1.6176 11.4337 3.7175 20 1 2.8613 12.1950 3.9985 21 1 0.4528 12.3538 3.7648 22 1 1.4484 10.3681 4.7378 23 6 4.1845 4.9699 0.9043 24 6 3.6281 3.5447 1.0432 25 6 4.2234 0.5003 1.1553 26 6 4.2367 -0.7230 0.2206 27 6 4.2361 0.2711 -0.9527 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.9140 3.5656 -0.2993 32 1 2.4483 3.3479 -1.3959 33 1 3.8435 2.7018 -2.2933 34 1 3.6223 5.2055 -2.4765 35 1 5.1671 4.6942 -1.7522 36 1 3.2145 7.0952 1.4850 37 1 2.9751 9.3947 -0.1371 38 1 1.3555 8.6883 0.0771 39 1 0.9292 12.2086 1.0707 40 1 5.2724 4.9480 0.9657 41 1 3.7841 5.5990 1.6992 42 1 2.5389 3.5775 1.0684 43 1 4.0000 3.0981 1.9653 44 1 5.2182 0.8629 1.4141 45 1 3.5763 0.3799 2.0243 46 1 3.3315 -1.3272 0.2815 47 1 5.1483 -1.3164 0.2897 48 1 3.5995 -0.0340 -1.7831 49 1 5.2345 0.5710 -1.2714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680660250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:13 Heat of formation + Delta-G solvation = -155.180098 kcal Electronic energy + Delta-G solvation = -31778.331750 eV Core-core repulsion = 27512.807283 eV Total energy + Delta-G solvation = -4265.524467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65374 -41.30872 -40.03450 -38.41583 -37.55398 -36.25690 -36.03313 -34.42774 -32.55518 -32.17540 -29.51594 -29.03247 -27.83777 -26.80808 -25.28125 -24.60453 -23.92576 -23.06048 -21.75307 -20.72446 -20.43093 -19.68159 -18.41644 -18.22066 -17.58040 -17.47703 -17.25102 -17.05771 -16.75204 -16.42545 -16.24772 -15.86311 -15.42347 -15.25026 -15.14446 -14.86121 -14.48875 -14.38095 -14.20308 -14.06829 -13.57985 -13.49638 -13.27434 -13.22914 -13.07432 -12.91017 -12.82274 -12.71920 -12.61959 -12.30321 -12.24485 -12.19587 -11.82818 -11.71729 -11.49631 -11.45261 -11.32858 -11.20014 -10.85134 -10.81865 -10.67652 -10.06633 -9.41013 -8.29795 -6.46866 1.03316 1.41709 1.45261 1.54443 1.56028 1.73529 2.17370 2.37384 3.04869 3.09425 3.18816 3.31366 3.41636 3.57580 3.70717 3.85215 3.91708 3.96901 4.05976 4.24176 4.25522 4.27999 4.28701 4.45930 4.49098 4.66328 4.69050 4.75800 4.77934 4.82686 4.93589 4.93913 5.04225 5.05828 5.08874 5.12766 5.15904 5.21401 5.24082 5.42905 5.45509 5.55227 5.62132 5.69535 5.82718 6.06484 6.62946 6.64285 6.74565 7.14197 7.23361 7.66288 8.82805 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002734 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.756705 B =10239.769589 C =10624.687231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.084 4.084 6 C 0.181 3.819 7 O -0.544 6.544 8 C -0.160 4.160 9 C 0.127 3.873 10 N -0.625 5.625 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.724 5.724 14 C 0.286 3.714 15 C -0.555 4.555 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.988 3.012 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.256 1.256 23 C 0.106 3.894 24 C -0.163 4.163 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.390 0.610 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.401 0.599 37 H -0.013 1.013 38 H -0.020 1.020 39 H 0.269 0.731 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 -30.226 1.830 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.326 3.674 4 O -0.414 6.414 5 C -0.085 4.085 6 C 0.140 3.860 7 O -0.353 6.353 8 C -0.199 4.199 9 C 0.004 3.996 10 N -0.364 5.364 11 C 0.393 3.607 12 O -0.532 6.532 13 N -0.379 5.379 14 C 0.163 3.837 15 C -0.593 4.593 16 H 0.100 0.900 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.016 4.016 24 C -0.201 4.201 25 C -0.142 4.142 26 C -0.170 4.170 27 C -0.144 4.144 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.239 0.761 37 H 0.005 0.995 38 H -0.002 1.002 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.320 -30.109 1.075 31.255 hybrid contribution -0.972 1.705 0.488 2.022 sum 7.348 -28.404 1.563 29.380 Atomic orbital electron populations 1.23542 0.75090 1.05748 1.02178 1.86484 1.24402 1.31997 1.83583 1.23200 0.91368 0.81338 0.71489 1.90701 1.67767 1.37070 1.45859 1.21561 0.86322 0.95684 1.04920 1.20163 0.81645 0.91335 0.92905 1.86365 1.16779 1.35882 1.96286 1.22652 1.01837 0.95881 0.99516 1.21503 1.01045 0.90203 0.86848 1.47303 1.60815 1.19279 1.08955 1.16265 0.78984 0.81252 0.84163 1.90810 1.58330 1.74339 1.29713 1.45474 1.66114 1.18201 1.08143 1.18402 0.90674 0.77813 0.96823 1.21567 1.42897 1.01971 0.92856 0.89958 1.26093 0.93974 0.97337 1.02190 1.70149 1.41169 1.13509 1.32123 0.85119 0.77935 0.78249 0.77664 1.19281 1.20918 1.17971 1.21953 1.01325 0.94540 0.83819 1.22752 1.02471 0.94919 0.99957 1.22932 1.01699 0.94996 0.94619 1.22923 1.03638 0.96104 0.94330 1.22885 1.01647 0.93524 0.96340 0.92595 0.84571 0.92369 0.75869 0.92149 0.88726 0.91623 0.88350 0.76079 0.99519 1.00204 0.92188 0.87695 0.90278 0.91566 0.88084 0.86787 0.91257 0.89295 0.89201 0.91299 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -6.22 8.67 -51.38 -0.45 -6.66 16 3 C 0.48 10.59 6.60 71.24 0.47 11.06 16 4 O -0.52 -15.56 11.85 21.98 0.26 -15.30 16 5 C -0.08 -1.42 0.46 -52.40 -0.02 -1.44 16 6 C 0.18 3.36 0.35 -10.77 0.00 3.36 16 7 O -0.54 -7.59 10.94 -148.98 -1.63 -9.22 16 8 C -0.16 -3.76 4.73 30.67 0.15 -3.62 16 9 C 0.13 3.41 6.01 86.36 0.52 3.93 16 10 N -0.63 -20.08 2.97 -836.07 -2.48 -22.56 16 11 C 0.69 31.55 8.29 179.05 1.49 33.04 16 12 O -0.65 -36.03 15.77 -3.97 -0.06 -36.10 16 13 N -0.72 -33.76 5.46 -482.31 -2.63 -36.40 16 14 C 0.29 16.69 5.43 85.63 0.47 17.15 16 15 C -0.56 -31.33 9.28 25.60 0.24 -31.09 16 16 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 19 Si 0.99 43.16 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C 0.11 2.44 5.99 86.51 0.52 2.96 16 24 C -0.16 -3.47 4.78 30.82 0.15 -3.33 16 25 C -0.11 -1.33 6.51 31.18 0.20 -1.13 16 26 C -0.13 -1.41 7.64 31.18 0.24 -1.17 16 27 C -0.11 -1.39 6.65 31.12 0.21 -1.19 16 28 H 0.06 0.89 8.13 -2.39 -0.02 0.88 16 29 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.89 16 31 H 0.39 4.22 5.83 -74.06 -0.43 3.78 16 32 H 0.06 1.88 5.88 -2.39 -0.01 1.87 16 33 H 0.09 1.85 7.88 -2.39 -0.02 1.83 16 34 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 35 H 0.10 1.91 7.03 -2.39 -0.02 1.89 16 36 H 0.40 15.76 5.81 -92.71 -0.54 15.23 16 37 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 38 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.11 1.66 7.02 -2.39 -0.02 1.64 16 41 H 0.08 1.95 5.65 -2.39 -0.01 1.94 16 42 H 0.07 1.91 5.86 -2.39 -0.01 1.90 16 43 H 0.10 1.70 7.69 -2.39 -0.02 1.68 16 44 H 0.11 1.30 7.45 -2.39 -0.02 1.28 16 45 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 46 H 0.09 1.00 6.86 -2.39 -0.02 0.98 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 49 H 0.11 1.36 7.26 -2.38 -0.02 1.34 16 Total: -1.00 -81.58 376.66 1.61 -79.97 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.02 Total: 27.64 kcal Atomic # 6 Polarization: 24.51 SS G_CDS: 6.27 Total: 30.78 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -4.83 Total: -116.29 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -1.88 Total: -67.27 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -81.58 1.61 -79.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680660250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.213 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds