Wall clock time and date at job start Tue Mar 31 2020 22:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48500 * 109.46811 * 269.99281 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99475 * 3 2 1 6 6 H 1.48503 * 109.46917 * 149.99736 * 3 2 1 7 7 C 1.38816 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 194.34543 * 7 2 1 9 9 N 1.36940 * 119.99759 * 14.34343 * 7 2 1 10 10 C 1.49042 * 120.06761 * 26.25315 * 9 7 2 11 11 C 1.53888 * 107.75068 * 133.48475 * 10 9 7 12 12 H 1.08997 * 112.09924 * 180.92399 * 11 10 9 13 13 C 1.54544 * 107.82941 * 304.88504 * 11 10 9 14 14 C 1.54279 * 104.94425 * 89.62056 * 13 11 10 15 15 C 1.54800 * 104.73161 * 0.08795 * 14 13 11 16 16 H 1.09000 * 112.18868 * 146.35260 * 15 14 13 17 17 C 1.47165 * 120.71155 * 205.02547 * 9 7 2 18 18 N 1.48306 * 104.39723 * 24.62253 * 15 14 13 19 19 C 1.34776 * 128.07809 * 139.10694 * 18 15 14 20 20 O 1.21288 * 120.00016 * 180.02562 * 19 18 15 21 21 C 1.50692 * 119.99991 * 0.02562 * 19 18 15 22 22 C 1.53001 * 109.47374 * 180.02562 * 21 19 18 23 23 H 1.08997 * 110.26826 * 52.92580 * 22 21 19 24 24 C 1.54342 * 110.30325 * 175.00086 * 22 21 19 25 25 C 1.54340 * 102.39253 * 92.58032 * 24 22 21 26 26 C 1.51371 * 105.17155 * 26.34518 * 25 24 22 27 27 C 1.38494 * 130.39226 * 162.81092 * 26 25 24 28 28 C 1.38106 * 120.21178 * 179.97438 * 27 26 25 29 29 C 1.38245 * 119.94052 * 0.02562 * 28 27 26 30 30 C 1.38106 * 119.93013 * 359.97438 * 29 28 27 31 31 C 1.38214 * 109.75514 * 342.81526 * 26 25 24 32 32 H 0.96999 * 119.99953 * 0.02562 * 1 2 3 33 33 H 1.09004 * 111.22888 * 13.15975 * 10 9 7 34 34 H 1.08998 * 108.54428 * 252.27245 * 10 9 7 35 35 H 1.09001 * 110.36603 * 208.51754 * 13 11 10 36 36 H 1.08999 * 110.36374 * 330.72878 * 13 11 10 37 37 H 1.09006 * 110.36310 * 118.90000 * 14 13 11 38 38 H 1.08996 * 110.36389 * 241.21274 * 14 13 11 39 39 H 1.08999 * 109.74833 * 107.61405 * 17 9 7 40 40 H 1.08995 * 109.78845 * 346.90556 * 17 9 7 41 41 H 1.08998 * 109.47690 * 300.00381 * 21 19 18 42 42 H 1.09004 * 109.47185 * 59.99917 * 21 19 18 43 43 H 1.09007 * 110.82150 * 210.80623 * 24 22 21 44 44 H 1.08997 * 110.82656 * 334.35302 * 24 22 21 45 45 H 1.09008 * 110.30752 * 145.26973 * 25 24 22 46 46 H 1.09000 * 110.30763 * 267.42011 * 25 24 22 47 47 H 1.08004 * 119.89523 * 359.97438 * 27 26 25 48 48 H 1.08007 * 120.02838 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.03889 * 179.97438 * 29 28 27 50 50 H 1.08001 * 119.89322 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0650 -1.2166 0.2323 9 7 1.3576 -2.3697 -0.2927 10 6 0.1378 -2.3486 -1.1490 11 6 0.2819 -3.4650 -2.1983 12 1 -0.5704 -3.5025 -2.8768 13 6 1.6148 -3.2409 -2.9477 14 6 2.6653 -4.0250 -2.1342 15 6 1.8685 -4.6547 -0.9658 16 1 2.2641 -5.6279 -0.6752 17 6 1.8619 -3.6587 0.2071 18 7 0.4780 -4.7441 -1.4736 19 6 -0.4020 -5.7524 -1.3141 20 8 -1.5116 -5.6710 -1.7970 21 6 -0.0073 -6.9808 -0.5357 22 6 -1.1791 -7.9641 -0.5057 23 1 -1.5330 -8.1606 -1.5177 24 6 -0.7558 -9.2810 0.1788 25 6 -1.1582 -9.0347 1.6483 26 6 -2.2903 -8.0318 1.5863 27 6 -3.2352 -7.6851 2.5376 28 6 -4.1883 -6.7268 2.2535 29 6 -4.2003 -6.1115 1.0156 30 6 -3.2589 -6.4559 0.0657 31 6 -2.3023 -7.4168 0.3486 32 1 -0.4850 0.8400 -0.0004 33 1 0.0227 -1.3865 -1.6483 34 1 -0.7306 -2.5442 -0.5201 35 1 1.5502 -3.6339 -3.9624 36 1 1.8650 -2.1802 -2.9677 37 1 3.1172 -4.8036 -2.7489 38 1 3.4309 -3.3496 -1.7526 39 1 1.2101 -4.0270 0.9993 40 1 2.8744 -3.5350 0.5911 41 1 0.8510 -7.4535 -1.0132 42 1 0.2551 -6.6965 0.4834 43 1 -1.3037 -10.1270 -0.2364 44 1 0.3198 -9.4346 0.0921 45 1 -1.4995 -9.9624 2.1078 46 1 -0.3178 -8.6222 2.2066 47 1 -3.2268 -8.1656 3.5049 48 1 -4.9235 -6.4584 2.9977 49 1 -4.9451 -5.3621 0.7915 50 1 -3.2691 -5.9752 -0.9014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018079708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:23 Heat of formation + Delta-G solvation = 24.122324 kcal Electronic energy + Delta-G solvation = -30976.435582 eV Core-core repulsion = 27161.828266 eV Total energy + Delta-G solvation = -3814.607316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.52829 -39.71101 -37.67196 -35.85023 -34.02462 -31.91267 -31.26104 -31.10529 -30.25820 -29.51972 -28.65389 -26.33650 -25.38123 -23.65312 -22.91351 -22.51436 -20.98789 -20.76680 -20.20987 -19.61026 -18.11858 -17.27975 -16.26514 -16.05013 -15.79105 -15.13585 -14.97898 -14.83710 -14.60207 -14.51889 -14.27003 -13.50956 -13.23711 -13.07880 -12.95212 -12.76548 -12.68365 -12.59785 -12.37095 -12.10155 -11.99332 -11.85905 -11.60806 -11.44506 -11.12302 -11.09094 -10.96162 -10.85725 -10.78685 -10.54629 -10.47426 -10.44168 -10.24766 -9.97571 -9.82936 -9.67525 -9.27838 -8.56658 -8.54123 -8.36202 -8.14370 -6.70620 -5.80124 -3.23221 1.53601 1.64281 3.08398 3.35082 3.41015 3.43419 3.44101 3.96586 4.41458 4.44750 4.53406 4.82227 4.84737 5.05888 5.11934 5.17229 5.25120 5.29769 5.31732 5.35042 5.38319 5.50768 5.53947 5.55537 5.58787 5.64871 5.75133 5.78948 5.83046 5.85460 5.95660 6.00042 6.09099 6.13285 6.20855 6.26921 6.33869 6.38892 6.40352 6.44989 6.57844 6.64090 6.64585 6.75916 6.81375 6.93002 6.97001 7.25158 7.33024 7.57831 7.73541 8.18170 8.33792 8.67872 9.12901 9.77240 10.34150 11.28147 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003556 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.727631 B = 7871.368222 C = 8748.096200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.176 3.824 11 C 0.105 3.895 12 H 0.086 0.914 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.107 3.893 16 H 0.084 0.916 17 C 0.142 3.858 18 N -0.606 5.606 19 C 0.531 3.469 20 O -0.551 6.551 21 C -0.124 4.124 22 C -0.034 4.034 23 H 0.086 0.914 24 C -0.117 4.117 25 C -0.080 4.080 26 C -0.104 4.104 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.128 4.128 30 C -0.085 4.085 31 C -0.085 4.085 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -17.513 -0.364 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.316 5.316 10 C 0.051 3.949 11 C 0.001 3.999 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.149 4.149 15 C 0.002 3.998 16 H 0.102 0.898 17 C 0.014 3.986 18 N -0.339 5.339 19 C 0.320 3.680 20 O -0.430 6.430 21 C -0.164 4.164 22 C -0.053 4.053 23 H 0.105 0.895 24 C -0.154 4.154 25 C -0.117 4.117 26 C -0.104 4.104 27 C -0.137 4.137 28 C -0.139 4.139 29 C -0.146 4.146 30 C -0.102 4.102 31 C -0.085 4.085 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.132 0.868 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.890 -17.395 -0.564 17.427 hybrid contribution 0.407 1.106 0.239 1.203 sum -0.483 -16.289 -0.325 16.299 Atomic orbital electron populations 1.70013 1.05185 1.25484 1.54238 1.25013 0.95303 0.98234 1.01006 0.86284 0.78984 0.83785 0.77655 1.21463 1.21809 1.20526 1.19184 0.91752 0.84300 1.42868 0.91537 1.44444 1.30091 1.00966 1.56069 1.21609 0.88251 0.95290 0.89782 1.23157 0.97371 0.84159 0.95201 0.89632 1.22322 0.94442 1.01687 0.96727 1.22327 0.98014 0.98678 0.95845 1.23030 0.81507 0.98821 0.96467 0.89847 1.21388 0.97970 0.86930 0.92265 1.49218 1.13883 1.17604 1.53175 1.20061 0.84057 0.83299 0.80590 1.90542 1.20570 1.80979 1.50948 1.21630 0.98940 0.94222 1.01582 1.20399 0.92163 0.93133 0.99561 0.89533 1.22371 1.01423 0.96825 0.94782 1.21026 0.95965 0.97385 0.97346 1.20587 0.96657 0.98495 0.94635 1.20493 0.95602 0.99023 0.98586 1.21005 0.98886 0.97001 0.97027 1.21135 0.99449 1.00124 0.93879 1.21240 0.92793 0.95421 1.00767 1.20362 0.96233 0.97008 0.94901 0.93567 0.88863 0.95708 0.93194 0.89700 0.92908 0.90008 0.96428 0.91989 0.89081 0.89108 0.90787 0.90419 0.91030 0.90373 0.86821 0.86392 0.86234 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 10.99 55.49 0.61 -25.21 16 2 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 3 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.52 9.65 -15.06 -0.15 -6.66 16 8 H 0.07 1.68 7.86 -52.49 -0.41 1.27 16 9 N -0.59 -13.97 2.39 -169.54 -0.40 -14.38 16 10 C 0.18 4.17 4.58 -2.17 -0.01 4.16 16 11 C 0.10 2.04 4.08 -65.66 -0.27 1.78 16 12 H 0.09 1.69 7.93 -51.93 -0.41 1.28 16 13 C -0.11 -1.94 6.20 -25.25 -0.16 -2.10 16 14 C -0.11 -1.70 6.22 -25.11 -0.16 -1.85 16 15 C 0.11 1.71 3.94 -65.53 -0.26 1.45 16 16 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 17 C 0.14 2.77 6.07 -3.22 -0.02 2.75 16 18 N -0.61 -10.77 2.75 -152.89 -0.42 -11.19 16 19 C 0.53 9.19 7.70 -10.99 -0.08 9.10 16 20 O -0.55 -10.88 12.71 5.55 0.07 -10.81 16 21 C -0.12 -1.62 4.08 -27.89 -0.11 -1.74 16 22 C -0.03 -0.43 2.50 -90.74 -0.23 -0.65 16 23 H 0.09 1.16 7.91 -51.93 -0.41 0.75 16 24 C -0.12 -1.10 6.60 -25.33 -0.17 -1.26 16 25 C -0.08 -0.81 6.76 -26.85 -0.18 -0.99 16 26 C -0.10 -1.38 6.14 -104.21 -0.64 -2.02 16 27 C -0.12 -1.54 10.04 -39.54 -0.40 -1.94 16 28 C -0.12 -1.62 10.05 -39.63 -0.40 -2.02 16 29 C -0.13 -1.91 10.05 -39.63 -0.40 -2.31 16 30 C -0.08 -1.39 9.06 -39.53 -0.36 -1.75 16 31 C -0.09 -1.26 5.16 -104.21 -0.54 -1.80 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.09 2.43 6.34 -51.93 -0.33 2.10 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.60 7.83 -51.93 -0.41 1.20 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 41 H 0.09 0.95 7.98 -51.93 -0.41 0.54 16 42 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 45 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 48 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 49 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 50 H 0.14 2.59 5.71 -52.49 -0.30 2.29 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -30.57 383.87 -12.08 -42.64 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.08 Total: 4.92 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.60 Total: -7.87 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.22 Total: -50.77 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.57 -12.08 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018079708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.767 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds