Wall clock time and date at job start Tue Mar 31 2020 22:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48500 * 109.46811 * 269.99281 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99475 * 3 2 1 6 6 H 1.48503 * 109.46917 * 149.99736 * 3 2 1 7 7 C 1.38816 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 194.34543 * 7 2 1 9 9 N 1.36940 * 119.99759 * 14.34343 * 7 2 1 10 10 C 1.49042 * 120.06761 * 26.25315 * 9 7 2 11 11 C 1.53888 * 107.75068 * 133.48475 * 10 9 7 12 12 H 1.08997 * 112.09924 * 180.92399 * 11 10 9 13 13 C 1.54544 * 107.82941 * 304.88504 * 11 10 9 14 14 C 1.54279 * 104.94425 * 89.62056 * 13 11 10 15 15 C 1.54800 * 104.73161 * 0.08795 * 14 13 11 16 16 H 1.09000 * 112.18868 * 146.35260 * 15 14 13 17 17 C 1.47165 * 120.71155 * 205.02547 * 9 7 2 18 18 N 1.48306 * 104.39723 * 24.62253 * 15 14 13 19 19 C 1.34776 * 128.07809 * 139.10694 * 18 15 14 20 20 O 1.21288 * 120.00016 * 180.02562 * 19 18 15 21 21 C 1.50692 * 119.99991 * 0.02562 * 19 18 15 22 22 C 1.53001 * 109.47374 * 180.02562 * 21 19 18 23 23 H 1.08997 * 110.26826 * 52.92580 * 22 21 19 24 24 C 1.54342 * 110.30325 * 175.00086 * 22 21 19 25 25 C 1.54340 * 102.39253 * 92.58032 * 24 22 21 26 26 C 1.51371 * 105.17155 * 26.34518 * 25 24 22 27 27 C 1.38494 * 130.39226 * 162.81092 * 26 25 24 28 28 C 1.38106 * 120.21178 * 179.97438 * 27 26 25 29 29 C 1.38245 * 119.94052 * 0.02562 * 28 27 26 30 30 C 1.38106 * 119.93013 * 359.97438 * 29 28 27 31 31 C 1.38214 * 109.75514 * 342.81526 * 26 25 24 32 32 H 0.96999 * 119.99953 * 0.02562 * 1 2 3 33 33 H 1.09004 * 111.22888 * 13.15975 * 10 9 7 34 34 H 1.08998 * 108.54428 * 252.27245 * 10 9 7 35 35 H 1.09001 * 110.36603 * 208.51754 * 13 11 10 36 36 H 1.08999 * 110.36374 * 330.72878 * 13 11 10 37 37 H 1.09006 * 110.36310 * 118.90000 * 14 13 11 38 38 H 1.08996 * 110.36389 * 241.21274 * 14 13 11 39 39 H 1.08999 * 109.74833 * 107.61405 * 17 9 7 40 40 H 1.08995 * 109.78845 * 346.90556 * 17 9 7 41 41 H 1.08998 * 109.47690 * 300.00381 * 21 19 18 42 42 H 1.09004 * 109.47185 * 59.99917 * 21 19 18 43 43 H 1.09007 * 110.82150 * 210.80623 * 24 22 21 44 44 H 1.08997 * 110.82656 * 334.35302 * 24 22 21 45 45 H 1.09008 * 110.30752 * 145.26973 * 25 24 22 46 46 H 1.09000 * 110.30763 * 267.42011 * 25 24 22 47 47 H 1.08004 * 119.89523 * 359.97438 * 27 26 25 48 48 H 1.08007 * 120.02838 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.03889 * 179.97438 * 29 28 27 50 50 H 1.08001 * 119.89322 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0650 -1.2166 0.2323 9 7 1.3576 -2.3697 -0.2927 10 6 0.1378 -2.3486 -1.1490 11 6 0.2819 -3.4650 -2.1983 12 1 -0.5704 -3.5025 -2.8768 13 6 1.6148 -3.2409 -2.9477 14 6 2.6653 -4.0250 -2.1342 15 6 1.8685 -4.6547 -0.9658 16 1 2.2641 -5.6279 -0.6752 17 6 1.8619 -3.6587 0.2071 18 7 0.4780 -4.7441 -1.4736 19 6 -0.4020 -5.7524 -1.3141 20 8 -1.5116 -5.6710 -1.7970 21 6 -0.0073 -6.9808 -0.5357 22 6 -1.1791 -7.9641 -0.5057 23 1 -1.5330 -8.1606 -1.5177 24 6 -0.7558 -9.2810 0.1788 25 6 -1.1582 -9.0347 1.6483 26 6 -2.2903 -8.0318 1.5863 27 6 -3.2352 -7.6851 2.5376 28 6 -4.1883 -6.7268 2.2535 29 6 -4.2003 -6.1115 1.0156 30 6 -3.2589 -6.4559 0.0657 31 6 -2.3023 -7.4168 0.3486 32 1 -0.4850 0.8400 -0.0004 33 1 0.0227 -1.3865 -1.6483 34 1 -0.7306 -2.5442 -0.5201 35 1 1.5502 -3.6339 -3.9624 36 1 1.8650 -2.1802 -2.9677 37 1 3.1172 -4.8036 -2.7489 38 1 3.4309 -3.3496 -1.7526 39 1 1.2101 -4.0270 0.9993 40 1 2.8744 -3.5350 0.5911 41 1 0.8510 -7.4535 -1.0132 42 1 0.2551 -6.6965 0.4834 43 1 -1.3037 -10.1270 -0.2364 44 1 0.3198 -9.4346 0.0921 45 1 -1.4995 -9.9624 2.1078 46 1 -0.3178 -8.6222 2.2066 47 1 -3.2268 -8.1656 3.5049 48 1 -4.9235 -6.4584 2.9977 49 1 -4.9451 -5.3621 0.7915 50 1 -3.2691 -5.9752 -0.9014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018079708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:22 Heat of formation + Delta-G solvation = 9.244449 kcal Electronic energy + Delta-G solvation = -30977.080735 eV Core-core repulsion = 27161.828266 eV Total energy + Delta-G solvation = -3815.252470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74830 -40.96907 -39.08431 -36.85792 -35.87024 -33.10961 -32.99298 -32.41568 -31.88765 -30.64567 -29.59952 -28.08788 -26.52437 -25.24926 -24.58602 -23.52567 -22.46893 -21.77170 -21.51190 -20.77261 -19.67222 -18.81725 -17.70303 -17.35734 -16.94351 -16.77944 -16.28552 -16.08285 -15.90890 -15.73437 -15.43525 -15.28025 -14.74656 -14.51780 -14.38344 -13.96723 -13.83423 -13.70007 -13.63166 -13.53172 -13.26171 -13.12868 -12.98520 -12.82704 -12.70393 -12.47277 -12.24864 -12.10962 -12.10031 -11.96133 -11.85591 -11.71208 -11.65743 -11.53912 -11.41295 -11.14221 -10.68960 -10.56736 -9.73804 -9.63746 -9.40209 -8.66197 -7.84432 -5.30658 0.46235 0.53054 1.47454 1.48425 1.57107 1.74155 2.08813 2.51311 2.87205 3.29980 3.43313 3.50469 3.59007 3.73112 3.86244 3.97426 4.02981 4.14546 4.16729 4.21589 4.25569 4.30290 4.39410 4.41620 4.50477 4.57852 4.61949 4.64940 4.71514 4.77680 4.87282 4.87673 4.90700 5.01684 5.04753 5.06324 5.10473 5.15165 5.17214 5.24932 5.26905 5.35061 5.38547 5.42122 5.56030 5.59429 5.61740 5.66725 5.70080 5.83384 6.18004 6.32655 6.81656 7.09055 7.31852 7.80243 8.35506 9.21917 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003556 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.727631 B = 7871.368222 C = 8748.096200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.056 4.056 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.193 3.807 11 C 0.109 3.891 12 H 0.071 0.929 13 C -0.106 4.106 14 C -0.102 4.102 15 C 0.117 3.883 16 H 0.135 0.865 17 C 0.134 3.866 18 N -0.610 5.610 19 C 0.518 3.482 20 O -0.584 6.584 21 C -0.112 4.112 22 C -0.035 4.035 23 H 0.072 0.928 24 C -0.104 4.104 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.151 4.151 30 C -0.117 4.117 31 C -0.106 4.106 32 H 0.246 0.754 33 H 0.060 0.940 34 H -0.030 1.030 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.000 1.000 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.119 0.881 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -21.070 0.426 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.188 1.188 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.067 3.933 11 C 0.004 3.996 12 H 0.089 0.911 13 C -0.145 4.145 14 C -0.141 4.141 15 C 0.014 3.986 16 H 0.153 0.847 17 C 0.008 3.992 18 N -0.343 5.343 19 C 0.310 3.690 20 O -0.465 6.465 21 C -0.152 4.152 22 C -0.054 4.054 23 H 0.090 0.910 24 C -0.141 4.141 25 C -0.114 4.114 26 C -0.107 4.107 27 C -0.141 4.141 28 C -0.145 4.145 29 C -0.169 4.169 30 C -0.135 4.135 31 C -0.106 4.106 32 H 0.055 0.945 33 H 0.078 0.922 34 H -0.011 1.011 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.018 0.982 40 H 0.099 0.901 41 H 0.151 0.849 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.137 0.863 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.708 -20.995 0.233 21.171 hybrid contribution -0.806 2.210 0.043 2.353 sum 1.902 -18.785 0.276 18.883 Atomic orbital electron populations 1.70221 1.06947 1.25488 1.56624 1.25789 0.95878 1.01536 1.01817 0.85259 0.78071 0.79600 0.77489 1.21229 1.23114 1.18799 1.19604 0.92317 0.85126 1.40803 0.90309 1.44640 1.29537 1.02234 1.56348 1.21175 0.86795 0.95474 0.89889 1.22799 0.98716 0.84102 0.93999 0.91062 1.22231 0.93294 1.00857 0.98098 1.22337 0.96935 0.99260 0.95522 1.23091 0.80572 1.00068 0.94917 0.84733 1.21639 0.98086 0.85865 0.93571 1.49338 1.15009 1.16774 1.53184 1.21079 0.83377 0.84346 0.80244 1.90558 1.22033 1.81771 1.52129 1.21683 1.00414 0.92021 1.01059 1.20493 0.91287 0.94772 0.98875 0.90992 1.22397 1.03430 0.94756 0.93564 1.21137 0.94856 0.97248 0.98191 1.21108 0.97388 0.98606 0.93646 1.20922 0.94929 0.98461 0.99830 1.21314 0.99709 0.96903 0.96568 1.21293 0.99743 1.00995 0.94895 1.21189 0.94980 0.97233 1.00060 1.20727 0.96550 0.96732 0.96579 0.94519 0.92195 1.01149 0.90761 0.92142 0.88895 0.90585 0.98236 0.90138 0.84900 0.88730 0.89777 0.87350 0.88818 0.89115 0.83865 0.84127 0.86330 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 10.99 21.65 0.24 -57.04 16 2 C -0.06 -3.08 5.01 84.86 0.43 -2.66 16 3 Si 0.97 44.45 29.58 68.60 2.03 46.48 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.25 -13.01 9.65 84.03 0.81 -12.20 16 8 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 9 N -0.60 -29.10 2.39 -690.30 -1.65 -30.75 16 10 C 0.19 9.78 4.58 86.19 0.39 10.18 16 11 C 0.11 4.39 4.08 45.47 0.19 4.57 16 12 H 0.07 3.03 7.93 -2.39 -0.02 3.01 16 13 C -0.11 -3.53 6.20 31.55 0.20 -3.34 16 14 C -0.10 -2.77 6.22 31.64 0.20 -2.57 16 15 C 0.12 3.36 3.94 45.55 0.18 3.54 16 16 H 0.14 2.59 7.42 -2.39 -0.02 2.57 16 17 C 0.13 5.07 6.07 86.55 0.53 5.60 16 18 N -0.61 -21.21 2.75 -756.02 -2.08 -23.29 16 19 C 0.52 17.74 7.70 87.65 0.67 18.42 16 20 O -0.58 -24.29 12.71 -3.05 -0.04 -24.33 16 21 C -0.11 -2.60 4.08 29.85 0.12 -2.48 16 22 C -0.04 -0.83 2.50 -10.87 -0.03 -0.85 16 23 H 0.07 1.88 7.91 -2.39 -0.02 1.86 16 24 C -0.10 -1.49 6.60 31.50 0.21 -1.28 16 25 C -0.08 -1.23 6.76 30.52 0.21 -1.02 16 26 C -0.11 -2.65 6.14 -19.60 -0.12 -2.77 16 27 C -0.12 -3.00 10.04 22.30 0.22 -2.78 16 28 C -0.13 -3.42 10.05 22.24 0.22 -3.19 16 29 C -0.15 -4.88 10.05 22.24 0.22 -4.66 16 30 C -0.12 -4.15 9.06 22.30 0.20 -3.95 16 31 C -0.11 -3.15 5.16 -19.60 -0.10 -3.25 16 32 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.06 3.40 6.34 -2.39 -0.02 3.38 16 34 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.30 7.83 -2.39 -0.02 2.28 16 37 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 38 H 0.08 2.20 7.86 -2.39 -0.02 2.18 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.08 2.73 7.96 -2.39 -0.02 2.72 16 41 H 0.13 1.99 7.98 -2.39 -0.02 1.97 16 42 H 0.09 2.19 8.13 -2.39 -0.02 2.17 16 43 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.11 0.94 7.86 -2.39 -0.02 0.92 16 45 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 48 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 49 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 50 H 0.11 4.54 5.71 -2.91 -0.02 4.53 16 Total: -1.00 -74.44 383.87 4.17 -70.27 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.92 Total: 23.36 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.75 Total: -4.70 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -3.49 Total: -111.08 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.44 4.17 -70.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018079708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.517 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds