Wall clock time and date at job start Tue Mar 31 2020 23:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48490 * 109.47284 * 274.81159 * 3 2 1 5 5 H 1.48503 * 109.46891 * 34.81691 * 3 2 1 6 6 H 1.48502 * 109.47006 * 154.80803 * 3 2 1 7 7 C 1.38813 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00190 * 188.12518 * 7 2 1 9 9 N 1.36933 * 120.00182 * 8.12598 * 7 2 1 10 10 C 1.48383 * 126.55965 * 7.74143 * 9 7 2 11 11 C 1.56421 * 107.29313 * 173.81758 * 10 9 7 12 12 C 1.53435 * 101.23876 * 338.42100 * 11 10 9 13 13 H 1.08995 * 111.14419 * 280.75821 * 12 11 10 14 14 C 1.45029 * 126.56302 * 187.70469 * 9 7 2 15 15 H 1.08997 * 108.26650 * 96.11458 * 14 9 7 16 16 C 1.51088 * 119.17890 * 331.23287 * 14 9 7 17 17 C 1.53878 * 107.33907 * 176.12832 * 16 14 9 18 18 C 1.52715 * 111.52615 * 56.93117 * 17 16 14 19 19 N 1.45724 * 116.37658 * 152.29399 * 12 11 10 20 20 C 1.34784 * 122.22864 * 8.74775 * 19 12 11 21 21 O 1.21282 * 120.00006 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99913 * 179.97438 * 20 19 12 23 23 H 1.09000 * 115.54534 * 325.71745 * 22 20 19 24 24 C 1.52993 * 117.49974 * 111.39041 * 22 20 19 25 25 C 1.52997 * 117.49900 * 180.02562 * 22 20 19 26 26 H 1.09001 * 117.49835 * 359.97438 * 25 22 20 27 27 C 1.50694 * 117.49880 * 145.02089 * 25 22 20 28 28 C 1.38237 * 120.00335 * 59.72558 * 27 25 22 29 29 C 1.38240 * 119.99757 * 179.76668 * 28 27 25 30 30 C 1.38227 * 120.00339 * 0.48152 * 29 28 27 31 31 C 1.38243 * 119.99903 * 359.79537 * 30 29 28 32 32 C 1.38232 * 120.00130 * 359.95045 * 31 30 29 33 33 H 0.96995 * 119.99878 * 359.97438 * 1 2 3 34 34 H 1.09003 * 109.96010 * 293.82240 * 10 9 7 35 35 H 1.08993 * 109.96335 * 55.06703 * 10 9 7 36 36 H 1.08998 * 111.57251 * 220.30542 * 11 10 9 37 37 H 1.09000 * 110.80405 * 96.20704 * 11 10 9 38 38 H 1.08998 * 109.88119 * 295.58676 * 16 14 9 39 39 H 1.09001 * 109.88268 * 56.67514 * 16 14 9 40 40 H 1.09002 * 109.06506 * 177.45112 * 17 16 14 41 41 H 1.08990 * 109.06717 * 296.39891 * 17 16 14 42 42 H 1.09003 * 109.15954 * 191.06357 * 18 17 16 43 43 H 1.08994 * 109.16488 * 71.87366 * 18 17 16 44 44 H 1.08999 * 117.49671 * 214.97840 * 24 22 20 45 45 H 1.09004 * 117.49755 * 359.97438 * 24 22 20 46 46 H 1.07995 * 119.99939 * 359.97438 * 28 27 25 47 47 H 1.08000 * 119.99273 * 180.25318 * 29 28 27 48 48 H 1.08001 * 120.00523 * 179.76933 * 30 29 28 49 49 H 1.07998 * 120.00087 * 179.97438 * 31 30 29 50 50 H 1.07998 * 120.00095 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3961 2.1052 -1.3950 5 1 1.5023 2.6211 0.7994 6 1 3.5949 1.4129 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0821 -1.2070 0.1316 9 7 1.3359 -2.3820 -0.1687 10 6 -0.0973 -2.5387 -0.5194 11 6 -0.3550 -4.0638 -0.7523 12 6 1.0641 -4.5647 -1.0511 13 1 1.3506 -4.3438 -2.0793 14 6 1.8861 -3.7176 -0.0388 15 1 1.6733 -4.0784 0.9674 16 6 3.3501 -3.9434 -0.3361 17 6 3.6603 -5.4171 -0.0201 18 6 2.7619 -6.3618 -0.8154 19 7 1.3438 -5.9551 -0.7166 20 6 0.3751 -6.8120 -0.3369 21 8 -0.7750 -6.4338 -0.2651 22 6 0.7210 -8.2402 -0.0028 23 1 1.5303 -8.6771 -0.5879 24 6 0.5906 -8.6754 1.4581 25 6 -0.4231 -9.1635 0.4209 26 1 -1.4258 -8.7378 0.4584 27 6 -0.3448 -10.6076 -0.0024 28 6 0.7230 -11.3886 0.3985 29 6 0.7922 -12.7147 0.0141 30 6 -0.2013 -13.2571 -0.7793 31 6 -1.2663 -12.4746 -1.1849 32 6 -1.3382 -11.1500 -0.7963 33 1 -0.4850 0.8400 0.0004 34 1 -0.7219 -2.1691 0.2939 35 1 -0.3180 -1.9923 -1.4363 36 1 -1.0160 -4.2334 -1.6022 37 1 -0.7524 -4.5313 0.1487 38 1 3.5505 -3.7396 -1.3880 39 1 3.9602 -3.2934 0.2911 40 1 4.7016 -5.6228 -0.2682 41 1 3.5078 -5.5926 1.0447 42 1 2.8720 -7.3735 -0.4250 43 1 3.0659 -6.3482 -1.8621 44 1 1.3139 -9.3989 1.8341 45 1 0.2551 -7.9285 2.1777 46 1 1.5015 -10.9637 1.0147 47 1 1.6244 -13.3259 0.3308 48 1 -0.1453 -14.2921 -1.0826 49 1 -2.0423 -12.8982 -1.8051 50 1 -2.1704 -10.5388 -1.1128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049772016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:02 Heat of formation + Delta-G solvation = 54.420254 kcal Electronic energy + Delta-G solvation = -29801.545426 eV Core-core repulsion = 25988.251927 eV Total energy + Delta-G solvation = -3813.293500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.62154 -39.63892 -38.07352 -36.21328 -35.37085 -32.59094 -32.15503 -31.21218 -30.79305 -28.97611 -28.21765 -25.51987 -24.47501 -24.06584 -23.26793 -22.57969 -21.49116 -20.93311 -20.29041 -19.65650 -18.60634 -17.58276 -16.79841 -16.31925 -15.74257 -15.27078 -15.20982 -15.03400 -14.75134 -14.41836 -14.28975 -14.08746 -13.81924 -13.60815 -13.30995 -13.15294 -13.08232 -12.50425 -12.42100 -12.28292 -12.07659 -11.81998 -11.58178 -11.52349 -11.26395 -11.07824 -10.87229 -10.86078 -10.70423 -10.59209 -10.49037 -10.43872 -10.10576 -9.95427 -9.82451 -9.58048 -9.18384 -9.04209 -8.78476 -8.55200 -8.19489 -6.78961 -5.69269 -3.03787 1.03825 1.14573 2.64935 3.09876 3.41107 3.45389 3.46197 3.48421 3.90656 4.25805 4.50779 4.53950 4.63104 4.65037 4.73925 4.80714 4.86385 4.94281 5.04407 5.11206 5.22023 5.27812 5.34831 5.38731 5.44728 5.48330 5.61668 5.67086 5.71963 5.75314 5.78706 5.82236 5.86902 5.92111 6.01320 6.10065 6.22561 6.24805 6.25983 6.30350 6.40708 6.41413 6.57018 6.73098 6.73827 6.78997 6.91381 7.20375 7.54450 7.69853 7.73675 7.84997 8.26606 8.45295 9.20027 9.84857 10.54002 11.43099 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.002388 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.264509 B =11721.542064 C =12345.760337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.130 4.130 12 C 0.117 3.883 13 H 0.077 0.923 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.111 3.889 19 N -0.595 5.595 20 C 0.545 3.455 21 O -0.531 6.531 22 C -0.174 4.174 23 H 0.122 0.878 24 C -0.145 4.145 25 C -0.087 4.087 26 H 0.128 0.872 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.119 4.119 30 C -0.127 4.127 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.252 0.748 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -25.612 -0.990 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.169 4.169 12 C 0.012 3.988 13 H 0.095 0.905 14 C 0.049 3.951 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.328 5.328 20 C 0.333 3.667 21 O -0.409 6.409 22 C -0.195 4.195 23 H 0.140 0.860 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.145 4.145 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.198 -25.156 -0.928 25.375 hybrid contribution 0.648 0.915 -0.163 1.133 sum 3.846 -24.241 -1.090 24.568 Atomic orbital electron populations 1.69961 1.04935 1.25087 1.56334 1.24821 0.95610 0.97702 1.02266 0.86144 0.78655 0.83775 0.77453 1.21689 1.21799 1.20645 1.18976 0.90892 0.82518 1.43175 0.90405 1.44044 1.06533 0.99345 1.81681 1.21879 0.85044 0.88866 0.99577 1.23129 0.93585 0.97753 1.02392 1.22412 0.99170 0.78452 0.98725 0.90477 1.20741 0.91741 0.87229 0.95351 0.96528 1.21427 0.98085 0.94204 1.01723 1.21894 0.98657 0.95710 1.00497 1.21712 0.80524 0.98407 1.00520 1.47908 1.07041 1.11184 1.66622 1.19448 0.84859 0.85589 0.76830 1.90694 1.19741 1.77504 1.52934 1.22405 1.02542 0.93879 1.00705 0.85997 1.23122 1.01682 1.02896 0.90471 1.21091 0.96651 0.90504 1.02293 0.85462 1.19176 0.94917 0.93473 0.97294 1.21087 0.98176 0.94094 1.00521 1.21119 0.98928 0.95238 0.98368 1.21156 0.94790 0.99852 0.98691 1.21156 0.98376 0.94048 1.00025 1.21053 0.98850 0.95322 0.97518 0.93736 0.92568 0.94653 0.92120 0.89721 0.91855 0.91417 0.90960 0.91769 0.90250 0.91680 0.87592 0.87578 0.85850 0.86099 0.86230 0.86020 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.69 55.49 0.59 -26.81 16 2 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 3 Si 0.91 22.19 29.56 -169.99 -5.03 17.17 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 8 H 0.08 2.06 7.29 -52.49 -0.38 1.68 16 9 N -0.59 -15.23 3.35 -162.67 -0.54 -15.78 16 10 C 0.17 4.35 5.49 -1.16 -0.01 4.35 16 11 C -0.13 -2.79 5.15 -24.67 -0.13 -2.91 16 12 C 0.12 2.22 3.28 -66.80 -0.22 2.00 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.16 3.32 2.59 -68.36 -0.18 3.14 16 15 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 16 C -0.12 -1.96 5.42 -27.24 -0.15 -2.11 16 17 C -0.13 -1.60 5.93 -26.42 -0.16 -1.75 16 18 C 0.11 1.30 6.28 -3.45 -0.02 1.28 16 19 N -0.60 -9.25 2.91 -163.99 -0.48 -9.73 16 20 C 0.54 8.53 7.48 -10.98 -0.08 8.44 16 21 O -0.53 -10.15 13.04 5.56 0.07 -10.08 16 22 C -0.17 -1.97 4.66 -91.78 -0.43 -2.40 16 23 H 0.12 1.16 6.93 -51.93 -0.36 0.80 16 24 C -0.14 -1.41 9.56 -26.72 -0.26 -1.67 16 25 C -0.09 -0.94 5.56 -91.77 -0.51 -1.45 16 26 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 27 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 28 C -0.12 -1.03 9.29 -39.58 -0.37 -1.40 16 29 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 30 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 31 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 32 C -0.11 -1.05 9.74 -39.58 -0.39 -1.43 16 33 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 34 H 0.06 1.59 7.29 -51.93 -0.38 1.21 16 35 H 0.04 0.96 7.85 -51.93 -0.41 0.56 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.91 6.12 -51.93 -0.32 1.59 16 38 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 39 H 0.07 1.21 7.72 -51.93 -0.40 0.80 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.72 5.89 -51.93 -0.31 0.41 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.11 0.78 6.18 -51.93 -0.32 0.46 16 45 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.12 0.86 6.03 -52.49 -0.32 0.54 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -32.69 386.98 -12.25 -44.94 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.79 Total: 2.26 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -4.91 Total: -7.80 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.43 Total: -52.32 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.69 -12.25 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049772016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.362 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds