Wall clock time and date at job start Tue Mar 31 2020 22:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00252 * 2 1 4 4 H 1.48499 * 109.47027 * 270.00313 * 3 2 1 5 5 H 1.48500 * 109.46679 * 30.00359 * 3 2 1 6 6 H 1.48503 * 109.46901 * 150.00249 * 3 2 1 7 7 C 1.38822 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99532 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99454 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.89038 * 336.34729 * 10 9 7 12 12 C 1.53953 * 113.66038 * 107.81274 * 10 9 7 13 13 C 1.53953 * 87.29448 * 139.20359 * 12 10 9 14 14 H 1.09002 * 113.66268 * 89.73775 * 13 12 10 15 15 N 1.46502 * 113.74576 * 220.78324 * 13 12 10 16 16 C 1.34773 * 119.99666 * 253.90604 * 15 13 12 17 17 O 1.21546 * 120.00637 * 0.02562 * 16 15 13 18 18 C 1.47858 * 119.99674 * 180.02562 * 16 15 13 19 19 C 1.39584 * 120.18597 * 0.02562 * 18 16 15 20 20 C 1.37809 * 119.78766 * 179.97438 * 19 18 16 21 21 C 1.38665 * 120.40959 * 0.02562 * 20 19 18 22 22 C 1.38374 * 120.07525 * 359.97438 * 21 20 19 23 23 C 1.38239 * 119.99909 * 359.73647 * 22 21 20 24 24 C 1.51399 * 109.74538 * 179.97438 * 22 21 20 25 25 C 1.54334 * 105.16961 * 17.22334 * 24 22 21 26 26 C 1.51424 * 130.22139 * 179.97438 * 21 20 19 27 27 C 1.52907 * 86.78237 * 335.26648 * 13 12 10 28 28 C 1.52907 * 121.13663 * 259.17829 * 27 13 12 29 29 C 1.53948 * 86.78136 * 209.37974 * 28 27 13 30 30 C 1.52910 * 121.13865 * 150.61789 * 27 13 12 31 31 H 0.97001 * 120.00117 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00375 * 359.97438 * 9 7 2 33 33 H 1.08998 * 113.58135 * 24.60335 * 12 10 9 34 34 H 1.09004 * 113.58267 * 253.80549 * 12 10 9 35 35 H 0.96998 * 120.00014 * 73.90706 * 15 13 12 36 36 H 1.08002 * 120.11267 * 359.95195 * 19 18 16 37 37 H 1.08004 * 119.79364 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.95013 * 180.26431 * 23 22 21 39 39 H 1.09002 * 110.30552 * 136.14458 * 24 22 21 40 40 H 1.08999 * 110.30422 * 258.30159 * 24 22 21 41 41 H 1.08998 * 110.82303 * 91.81204 * 25 24 22 42 42 H 1.09004 * 110.81950 * 215.15780 * 25 24 22 43 43 H 1.09002 * 110.30017 * 281.73070 * 26 21 20 44 44 H 1.08997 * 110.29775 * 43.87131 * 26 21 20 45 45 H 1.08991 * 113.66565 * 323.85437 * 28 27 13 46 46 H 1.09002 * 113.66061 * 94.91304 * 28 27 13 47 47 H 1.09003 * 113.58351 * 270.12580 * 29 28 27 48 48 H 1.09006 * 113.64746 * 139.34839 * 29 28 27 49 49 H 1.08999 * 113.66294 * 265.09021 * 30 27 13 50 50 H 1.08996 * 113.66336 * 36.05103 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 3.0665 -3.5641 -0.4034 12 6 1.9933 -4.4076 1.3420 13 6 1.8249 -5.7025 0.5264 14 1 2.7685 -6.1856 0.2728 15 7 0.8427 -6.6315 1.0908 16 6 1.2562 -7.7526 1.7141 17 8 2.4440 -7.9927 1.8085 18 6 0.2649 -8.6906 2.2831 19 6 -1.1001 -8.4190 2.1765 20 6 -2.0169 -9.2991 2.7094 21 6 -1.5917 -10.4524 3.3512 22 6 -0.2399 -10.7272 3.4601 23 6 0.6883 -9.8542 2.9240 24 6 -0.0415 -12.0341 4.1982 25 6 -1.4119 -12.7418 4.1420 26 6 -2.3918 -11.5572 4.0086 27 6 1.2655 -4.8230 -0.5924 28 6 -0.2404 -4.7137 -0.8342 29 6 0.1033 -4.4616 -2.3135 30 6 1.4196 -5.2189 -2.0613 31 1 -0.4850 0.8400 0.0004 32 1 0.3554 -2.3881 0.0002 33 1 1.1196 -4.1535 1.9420 34 1 2.9232 -4.3675 1.9093 35 1 -0.1052 -6.4398 1.0158 36 1 -1.4368 -7.5218 1.6783 37 1 -3.0731 -9.0893 2.6266 38 1 1.7430 -10.0716 3.0057 39 1 0.7168 -12.6384 3.7002 40 1 0.2442 -11.8446 5.2328 41 1 -1.4749 -13.3959 3.2724 42 1 -1.5972 -13.3007 5.0594 43 1 -2.7374 -11.2399 4.9925 44 1 -3.2386 -11.8355 3.3812 45 1 -0.7797 -5.6452 -0.6630 46 1 -0.7018 -3.8585 -0.3404 47 1 0.2455 -3.4081 -2.5547 48 1 -0.5647 -4.9683 -3.0101 49 1 2.2842 -4.7673 -2.5477 50 1 1.3485 -6.2926 -2.2347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078805621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:59 Heat of formation + Delta-G solvation = 38.365797 kcal Electronic energy + Delta-G solvation = -29090.691626 eV Core-core repulsion = 25276.701953 eV Total energy + Delta-G solvation = -3813.989673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.83460 -40.24366 -38.74769 -35.76089 -34.86646 -34.12873 -32.48416 -31.72785 -30.10781 -29.20130 -27.72459 -25.50681 -24.90268 -24.14663 -23.48216 -22.37908 -21.66405 -21.16164 -20.45016 -19.89685 -18.10849 -17.64759 -16.84018 -16.40470 -16.01909 -15.74060 -15.21236 -15.09404 -15.06411 -14.67099 -14.53954 -14.19429 -13.78618 -13.42041 -13.25439 -13.01202 -12.89915 -12.77115 -12.44815 -12.17909 -12.06894 -11.90388 -11.84497 -11.57161 -11.50655 -11.25145 -11.21622 -11.07159 -10.91553 -10.78944 -10.71355 -10.20832 -10.04664 -10.00835 -9.86661 -9.63838 -9.44097 -9.09998 -8.87315 -8.85675 -8.59009 -6.98383 -5.81207 -3.09338 0.66243 1.11615 2.79458 3.23702 3.41737 3.47767 3.48893 3.69013 4.03161 4.17699 4.55866 4.60415 4.61272 4.69361 4.79619 4.83045 4.90701 4.94690 5.04694 5.08022 5.23950 5.25311 5.28904 5.31117 5.38975 5.42670 5.45099 5.52555 5.67067 5.70294 5.75512 5.83380 5.89236 5.90309 5.98079 6.00276 6.06440 6.07492 6.13029 6.23105 6.30524 6.33274 6.40306 6.51547 6.58568 6.61082 6.66061 6.86157 6.92862 7.07383 7.65051 7.68626 8.29924 8.37691 9.49445 10.05939 10.41064 11.41089 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002203 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.130288 B =12705.589940 C =12757.198793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.193 3.807 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.110 0.890 15 N -0.705 5.705 16 C 0.556 3.444 17 O -0.543 6.543 18 C -0.130 4.130 19 C -0.085 4.085 20 C -0.114 4.114 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.049 4.049 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.085 4.085 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.129 4.129 30 C -0.126 4.126 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -24.754 4.870 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.128 0.872 15 N -0.355 5.355 16 C 0.344 3.656 17 O -0.421 6.421 18 C -0.133 4.133 19 C -0.104 4.104 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.067 4.067 24 C -0.119 4.119 25 C -0.158 4.158 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.155 4.155 29 C -0.167 4.167 30 C -0.164 4.164 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.943 -24.705 4.915 25.670 hybrid contribution -0.393 1.139 0.022 1.205 sum -5.337 -23.567 4.937 24.662 Atomic orbital electron populations 1.69648 1.05093 1.25733 1.57551 1.24742 0.95519 0.97717 1.02827 0.86196 0.78724 0.83813 0.77500 1.21726 1.21819 1.20725 1.19303 0.91122 0.84099 1.42798 0.91051 1.42343 1.05811 0.99470 1.86776 1.21058 0.94746 0.84345 0.91864 0.90004 1.24281 1.01849 0.95229 1.00249 1.22323 0.92486 0.87658 0.94956 0.87191 1.45909 1.10616 1.21977 1.56993 1.18239 0.88127 0.81152 0.78128 1.90748 1.17100 1.75538 1.58729 1.19891 0.93450 0.96741 1.03197 1.21224 0.91971 0.98988 0.98222 1.20556 0.99837 0.93735 0.99096 1.20831 0.94935 0.95291 0.96677 1.20545 0.93539 0.97186 0.99563 1.20695 1.00108 0.91657 0.94286 1.21060 0.98271 0.92511 1.00060 1.22296 0.93981 0.96976 1.02571 1.21109 0.97906 0.92640 1.00541 1.23615 0.97302 0.98058 0.93215 1.22427 0.94482 1.01059 0.97525 1.22721 0.96655 1.01573 0.95708 1.22704 0.98576 0.99227 0.95866 0.93486 0.77782 0.90187 0.92055 0.76560 0.85348 0.85553 0.84867 0.90481 0.90022 0.90863 0.90391 0.89882 0.90435 0.91288 0.90243 0.89089 0.92535 0.91452 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.81 5.32 -52.98 -0.28 -17.10 16 10 C 0.19 3.73 4.36 -67.48 -0.29 3.43 16 11 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 12 C -0.17 -3.11 7.69 -25.75 -0.20 -3.31 16 13 C 0.13 2.04 4.10 -67.48 -0.28 1.76 16 14 H 0.11 1.81 7.50 -51.93 -0.39 1.42 16 15 N -0.70 -9.78 5.23 -54.31 -0.28 -10.06 16 16 C 0.56 8.36 7.77 -12.32 -0.10 8.27 16 17 O -0.54 -9.93 15.97 5.33 0.09 -9.84 16 18 C -0.13 -1.63 5.87 -105.01 -0.62 -2.25 16 19 C -0.09 -0.88 9.54 -39.24 -0.37 -1.26 16 20 C -0.11 -1.04 10.02 -39.58 -0.40 -1.44 16 21 C -0.08 -0.70 6.14 -104.06 -0.64 -1.34 16 22 C -0.11 -1.07 6.13 -104.23 -0.64 -1.70 16 23 C -0.05 -0.58 9.59 -39.14 -0.38 -0.95 16 24 C -0.08 -0.58 6.77 -26.84 -0.18 -0.76 16 25 C -0.12 -0.67 7.08 -25.34 -0.18 -0.85 16 26 C -0.09 -0.53 6.77 -26.84 -0.18 -0.72 16 27 C -0.12 -1.89 1.06 -154.71 -0.16 -2.05 16 28 C -0.12 -1.75 6.78 -26.28 -0.18 -1.93 16 29 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 30 C -0.13 -1.85 7.84 -26.29 -0.21 -2.05 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.39 9.66 5.92 -40.82 -0.24 9.42 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.40 4.74 5.02 -40.82 -0.20 4.54 16 36 H 0.13 1.11 6.41 -52.49 -0.34 0.77 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.13 1.61 7.64 -52.49 -0.40 1.21 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.85 6.99 -51.93 -0.36 0.49 16 46 H 0.08 1.37 6.42 -51.93 -0.33 1.04 16 47 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -31.33 397.42 -11.97 -43.31 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.73 Total: 13.63 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -5.45 Total: -16.40 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.16 Total: -53.77 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.33 -11.97 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078805621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.674 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds