Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00354 * 2 1 4 4 H 1.48505 * 109.46896 * 270.00113 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99970 * 3 2 1 6 6 H 1.48505 * 109.47375 * 150.00318 * 3 2 1 7 7 C 1.38812 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00297 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00292 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47173 * 34.99832 * 10 9 7 12 12 C 1.53001 * 109.46901 * 275.00314 * 10 9 7 13 13 C 1.52998 * 109.47206 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47540 * 59.99279 * 13 12 10 15 15 C 1.53001 * 109.47139 * 300.00771 * 14 13 12 16 16 C 1.52993 * 109.47144 * 155.00151 * 10 9 7 17 17 H 1.09000 * 109.47346 * 59.99787 * 16 10 9 18 18 N 1.46498 * 109.47292 * 299.99771 * 16 10 9 19 19 C 1.34779 * 120.00335 * 155.00075 * 18 16 10 20 20 O 1.21273 * 119.99626 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99958 * 179.97438 * 19 18 16 22 22 H 1.09002 * 115.54082 * 325.58395 * 21 19 18 23 23 C 1.53040 * 117.48023 * 179.97438 * 21 19 18 24 24 H 1.09000 * 119.41775 * 140.81491 * 23 21 19 25 25 C 1.53439 * 118.57642 * 343.84704 * 23 21 19 26 26 C 1.50962 * 107.03795 * 297.01302 * 25 23 21 27 27 C 1.38784 * 129.72471 * 179.61992 * 26 25 23 28 28 C 1.38015 * 120.31589 * 180.02562 * 27 26 25 29 29 C 1.38252 * 119.87269 * 359.97438 * 28 27 26 30 30 C 1.38006 * 119.89188 * 0.02562 * 29 28 27 31 31 C 1.37809 * 110.46398 * 359.68178 * 26 25 23 32 32 C 1.50950 * 110.47739 * 359.94247 * 31 26 25 33 33 H 1.08997 * 117.16204 * 220.04584 * 32 31 26 34 34 H 0.97002 * 119.99340 * 0.02562 * 1 2 3 35 35 H 0.96997 * 119.99530 * 359.97438 * 9 7 2 36 36 H 1.09010 * 109.46876 * 299.99730 * 12 10 9 37 37 H 1.09001 * 109.47422 * 59.99710 * 12 10 9 38 38 H 1.08998 * 109.47746 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46837 * 299.99499 * 13 12 10 40 40 H 1.09010 * 109.46851 * 60.00306 * 14 13 12 41 41 H 1.08999 * 109.47278 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.46800 * 299.98958 * 15 14 13 43 43 H 1.09001 * 109.47102 * 179.97438 * 15 14 13 44 44 H 0.97006 * 119.99967 * 334.99999 * 18 16 10 45 45 H 1.08998 * 109.92763 * 177.66192 * 25 23 21 46 46 H 1.09002 * 109.91765 * 56.35830 * 25 23 21 47 47 H 1.08005 * 119.84099 * 0.04931 * 27 26 25 48 48 H 1.07997 * 120.06541 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.05334 * 180.02562 * 29 28 27 50 50 H 1.08004 * 119.84296 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3797 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 1 3.5645 -3.2062 -0.5919 12 6 4.2587 -2.9765 1.4344 13 6 5.0241 -4.3012 1.4334 14 6 6.4111 -4.0885 0.8235 15 6 6.2644 -3.5829 -0.6131 16 6 5.4990 -2.2587 -0.6122 17 1 6.0466 -1.5235 -0.0225 18 7 5.3587 -1.7747 -1.9877 19 6 6.3478 -1.0546 -2.5530 20 8 7.3542 -0.8077 -1.9231 21 6 6.2036 -0.5572 -3.9683 22 1 5.6595 -1.2163 -4.6448 23 6 7.3613 0.2553 -4.5527 24 1 7.6493 0.1050 -5.5931 25 6 8.4080 0.8366 -3.5930 26 6 7.6905 1.8173 -2.6973 27 6 8.1846 2.5987 -1.6622 28 6 7.3438 3.4395 -0.9615 29 6 6.0030 3.5045 -1.2921 30 6 5.5099 2.7282 -2.3210 31 6 6.3537 1.8811 -3.0259 32 6 6.0471 0.9504 -4.1741 33 1 5.3550 1.3104 -4.9353 34 1 -0.4849 0.8401 -0.0004 35 1 3.8647 -0.3623 -0.0014 36 1 4.8063 -2.2413 2.0242 37 1 3.2705 -3.1278 1.8690 38 1 5.1290 -4.6612 2.4568 39 1 4.4769 -5.0366 0.8436 40 1 6.9584 -3.3530 1.4134 41 1 6.9562 -5.0323 0.8224 42 1 5.7173 -4.3183 -1.2029 43 1 7.2526 -3.4309 -1.0474 44 1 4.5538 -1.9725 -2.4918 45 1 9.1857 1.3501 -4.1583 46 1 8.8463 0.0384 -2.9939 47 1 9.2322 2.5489 -1.4041 48 1 7.7325 4.0455 -0.1566 49 1 5.3425 4.1618 -0.7460 50 1 4.4623 2.7799 -2.5789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085355756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = 24.237071 kcal Electronic energy + Delta-G solvation = -31113.331917 eV Core-core repulsion = 27298.729577 eV Total energy + Delta-G solvation = -3814.602341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20889 -39.32459 -37.91307 -36.46231 -34.16064 -33.76483 -31.67574 -31.35172 -30.48682 -29.42848 -28.21490 -27.52709 -24.59214 -23.46898 -22.70694 -21.71707 -20.99095 -20.87300 -20.34178 -20.00913 -19.14248 -17.65944 -17.06215 -16.04989 -15.90449 -15.55891 -15.10465 -14.73475 -14.70912 -14.32853 -14.17422 -13.79848 -13.54499 -13.40125 -13.30969 -13.09974 -12.94253 -12.63047 -12.52163 -12.43007 -12.20135 -12.04644 -11.79946 -11.36223 -11.16460 -11.02315 -10.92742 -10.86945 -10.70046 -10.60248 -10.49900 -10.36298 -10.27261 -10.11359 -9.76883 -9.61032 -9.25219 -8.93592 -8.66815 -8.54618 -8.28705 -7.29355 -5.80040 -3.15338 1.45449 1.59375 2.74042 3.34929 3.38287 3.43474 3.44489 3.63710 3.96829 4.39345 4.52696 4.57504 4.80924 4.89611 4.93664 5.00749 5.10439 5.14397 5.20240 5.21912 5.28285 5.41255 5.42946 5.47875 5.58213 5.60714 5.66321 5.68853 5.76580 5.80314 5.85644 5.88089 5.91733 5.92852 6.04238 6.06616 6.21512 6.25814 6.34454 6.39084 6.41190 6.43616 6.48915 6.60404 6.68979 6.80689 6.81572 6.84443 7.01838 7.16822 7.88400 7.95721 8.38769 8.57265 9.17562 9.90694 10.10640 11.37857 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.005713 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.903891 B = 4900.251892 C = 6785.063943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.178 3.822 11 H 0.059 0.941 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.140 3.860 17 H 0.081 0.919 18 N -0.708 5.708 19 C 0.541 3.459 20 O -0.537 6.537 21 C -0.156 4.156 22 H 0.132 0.868 23 C -0.123 4.123 24 H 0.128 0.872 25 C -0.057 4.057 26 C -0.057 4.057 27 C -0.113 4.113 28 C -0.113 4.113 29 C -0.129 4.129 30 C -0.094 4.094 31 C -0.082 4.082 32 C -0.096 4.096 33 H 0.124 0.876 34 H 0.259 0.741 35 H 0.362 0.638 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.403 0.597 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.688 -1.425 -7.489 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.068 3.932 11 H 0.077 0.923 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.161 4.161 16 C 0.035 3.965 17 H 0.099 0.901 18 N -0.357 5.357 19 C 0.327 3.673 20 O -0.415 6.415 21 C -0.177 4.177 22 H 0.150 0.850 23 C -0.141 4.141 24 H 0.145 0.855 25 C -0.094 4.094 26 C -0.057 4.057 27 C -0.131 4.131 28 C -0.131 4.131 29 C -0.147 4.147 30 C -0.112 4.112 31 C -0.082 4.082 32 C -0.114 4.114 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.195 0.805 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.238 0.762 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.135 0.865 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.140 -1.287 -7.042 18.575 hybrid contribution -0.239 1.171 -0.088 1.198 sum 16.901 -0.116 -7.131 18.344 Atomic orbital electron populations 1.69703 1.05062 1.25756 1.57532 1.24629 0.95134 0.97063 1.02002 0.86631 0.79272 0.85219 0.77959 1.20832 1.21994 1.20261 1.19042 0.80486 0.94593 1.43026 0.89184 1.42780 1.03935 1.01860 1.90162 1.20431 0.89311 0.89505 0.93945 0.92347 1.22187 1.00439 0.95483 0.99294 1.21572 0.95605 0.98419 1.00129 1.21481 0.97476 1.00494 0.95767 1.21845 1.00330 0.96765 0.97185 1.21283 0.97652 0.95313 0.82260 0.90102 1.45928 1.20200 1.54255 1.15318 1.19559 0.83221 0.77467 0.87029 1.90609 1.29516 1.57409 1.63987 1.22394 1.04301 0.94573 0.96462 0.85006 1.22897 0.89976 1.01302 0.99920 0.85464 1.20399 0.96535 0.97247 0.95199 1.20299 0.94399 0.95061 0.95967 1.20527 0.99663 0.97116 0.95772 1.20974 0.93686 0.99097 0.99383 1.20973 0.95676 1.00264 0.97828 1.20763 0.99384 0.95657 0.95381 1.19553 0.94113 0.97651 0.96894 1.21420 1.01688 0.89651 0.98645 0.85792 0.93128 0.80483 0.92655 0.91146 0.92557 0.92190 0.92092 0.92318 0.91925 0.91911 0.76198 0.90780 0.87276 0.86528 0.86129 0.86182 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.25 27.73 -169.99 -4.71 17.54 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 7 C -0.24 -6.55 10.41 -15.06 -0.16 -6.70 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -17.01 4.76 -53.43 -0.25 -17.26 16 10 C 0.18 3.26 2.29 -67.94 -0.16 3.11 16 11 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -2.27 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.12 -1.67 5.49 -26.76 -0.15 -1.81 16 16 C 0.14 2.29 1.97 -67.96 -0.13 2.15 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.71 -11.05 4.91 -53.84 -0.26 -11.32 16 19 C 0.54 8.51 6.88 -10.99 -0.08 8.44 16 20 O -0.54 -9.62 12.21 5.56 0.07 -9.55 16 21 C -0.16 -1.98 6.18 -91.77 -0.57 -2.55 16 22 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 23 C -0.12 -1.39 7.06 -90.16 -0.64 -2.03 16 24 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 25 C -0.06 -0.73 5.77 -27.53 -0.16 -0.89 16 26 C -0.06 -0.86 4.87 -104.45 -0.51 -1.37 16 27 C -0.11 -1.63 10.04 -39.46 -0.40 -2.02 16 28 C -0.11 -1.63 10.05 -39.66 -0.40 -2.03 16 29 C -0.13 -2.05 10.04 -39.66 -0.40 -2.45 16 30 C -0.09 -1.59 10.04 -39.46 -0.40 -1.98 16 31 C -0.08 -1.30 5.27 -104.45 -0.55 -1.85 16 32 C -0.10 -1.26 6.85 -91.46 -0.63 -1.89 16 33 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 35 H 0.36 8.65 5.66 -40.82 -0.23 8.42 16 36 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 6.01 8.60 -40.82 -0.35 5.66 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.11 1.55 6.21 -51.93 -0.32 1.23 16 47 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 48 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 49 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 50 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -32.16 392.82 -12.41 -44.57 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -8.07 Total: 17.65 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -5.87 Total: -19.52 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.26 Total: -56.60 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.16 -12.41 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085355756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.808 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds