Wall clock time and date at job start Tue Mar 31 2020 23:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46964 * 272.85527 * 3 2 1 5 5 H 1.48503 * 109.46913 * 32.85024 * 3 2 1 6 6 H 1.48491 * 109.46996 * 152.85416 * 3 2 1 7 7 C 1.38805 * 120.00023 * 179.72206 * 2 1 3 8 8 H 1.07997 * 120.00351 * 344.31168 * 7 2 1 9 9 N 1.36947 * 119.99975 * 164.31135 * 7 2 1 10 10 C 1.46492 * 119.99799 * 126.57362 * 9 7 2 11 11 C 1.52999 * 109.47485 * 90.00181 * 10 9 7 12 12 C 1.53001 * 109.47645 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46865 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99373 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00445 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99667 * 179.97438 * 14 13 12 17 17 H 1.08998 * 115.54561 * 325.59547 * 16 14 13 18 18 C 1.53041 * 117.48167 * 180.02562 * 16 14 13 19 19 H 1.09003 * 119.41331 * 140.82205 * 18 16 14 20 20 C 1.53444 * 118.58093 * 343.85291 * 18 16 14 21 21 C 1.50975 * 107.03359 * 297.00279 * 20 18 16 22 22 C 1.38783 * 129.72319 * 179.64100 * 21 20 18 23 23 C 1.38010 * 120.31242 * 180.09733 * 22 21 20 24 24 C 1.38258 * 119.87864 * 359.97438 * 23 22 21 25 25 C 1.38019 * 119.88235 * 359.97438 * 24 23 22 26 26 C 1.37805 * 110.46072 * 359.70607 * 21 20 18 27 27 C 1.50951 * 110.48264 * 359.90962 * 26 21 20 28 28 H 1.08998 * 117.44285 * 220.73739 * 27 26 21 29 29 C 1.46502 * 120.00042 * 306.57717 * 9 7 2 30 30 C 1.53001 * 117.49906 * 2.77767 * 29 9 7 31 31 C 1.52996 * 60.00092 * 252.51621 * 30 29 9 32 32 H 0.97004 * 119.99900 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 209.99894 * 10 9 7 34 34 H 1.09007 * 109.47482 * 329.99957 * 10 9 7 35 35 H 1.09008 * 109.46996 * 300.00308 * 11 10 9 36 36 H 1.09007 * 109.46944 * 59.99446 * 11 10 9 37 37 H 1.08995 * 109.47142 * 300.00074 * 12 11 10 38 38 H 1.08998 * 109.46642 * 60.00313 * 12 11 10 39 39 H 0.96995 * 120.00795 * 0.02562 * 13 12 11 40 40 H 1.09001 * 109.91955 * 56.35162 * 20 18 16 41 41 H 1.08997 * 109.92042 * 177.65924 * 20 18 16 42 42 H 1.08001 * 119.84515 * 0.10011 * 22 21 20 43 43 H 1.07997 * 120.06532 * 179.97438 * 23 22 21 44 44 H 1.07989 * 120.06049 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.84035 * 180.02562 * 25 24 23 46 46 H 1.08994 * 115.55137 * 148.48620 * 29 9 7 47 47 H 1.09005 * 117.49588 * 0.02562 * 30 29 9 48 48 H 1.08996 * 117.49906 * 145.01770 * 30 29 9 49 49 H 1.09008 * 117.49671 * 252.51617 * 31 30 29 50 50 H 1.08994 * 117.50182 * 107.49291 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4373 2.0814 -1.3984 5 1 1.4791 2.6346 0.7595 6 1 3.5766 1.4236 0.6388 7 6 2.0103 -1.2021 0.0058 8 1 1.5005 -2.1187 0.2632 9 7 3.3415 -1.2257 -0.3148 10 6 4.3042 -1.8442 0.5999 11 6 4.4569 -3.3267 0.2536 12 6 5.4629 -3.9726 1.2084 13 7 5.6085 -5.3922 0.8771 14 6 6.4489 -6.1678 1.5904 15 8 7.0842 -5.6907 2.5067 16 6 6.5983 -7.6282 1.2500 17 1 5.6947 -8.1225 0.8933 18 6 7.5677 -8.4553 2.0975 19 1 7.3011 -9.4756 2.3733 20 6 8.5928 -7.7185 2.9697 21 6 9.4934 -6.9457 2.0365 22 6 10.5691 -6.1178 2.3254 23 6 11.2646 -5.4984 1.3069 24 6 10.8889 -5.7036 -0.0078 25 6 9.8200 -6.5275 -0.2968 26 6 9.1188 -7.1504 0.7262 27 6 7.9328 -8.0814 0.6552 28 1 7.9310 -8.8334 -0.1338 29 6 3.8027 -0.6324 -1.5723 30 6 2.7583 0.0555 -2.4538 31 6 3.3458 -1.2931 -2.8745 32 1 -0.4850 0.8401 -0.0004 33 1 5.2694 -1.3471 0.5021 34 1 3.9468 -1.7455 1.6249 35 1 3.4918 -3.8239 0.3513 36 1 4.8143 -3.4254 -0.7715 37 1 6.4279 -3.4754 1.1103 38 1 5.1058 -3.8739 2.2335 39 1 5.1008 -5.7738 0.1440 40 1 8.0811 -7.0325 3.6448 41 1 9.1795 -8.4377 3.5412 42 1 10.8634 -5.9574 3.3521 43 1 12.1008 -4.8546 1.5362 44 1 11.4307 -5.2200 -0.8070 45 1 9.5273 -6.6876 -1.3241 46 1 4.8044 -0.2032 -1.5501 47 1 1.7281 0.0670 -2.0978 48 1 3.0728 0.9376 -3.0116 49 1 4.0470 -1.2982 -3.7092 50 1 2.7022 -2.1691 -2.7956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713046292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:04 Heat of formation + Delta-G solvation = 73.773446 kcal Electronic energy + Delta-G solvation = -29041.052514 eV Core-core repulsion = 25228.598232 eV Total energy + Delta-G solvation = -3812.454282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42934 -39.01518 -37.50395 -36.95099 -35.27474 -33.29462 -32.18087 -31.83972 -30.75056 -29.85898 -27.85350 -25.97816 -24.41105 -23.27720 -22.42552 -21.61169 -21.32173 -21.18505 -20.57941 -19.86008 -19.48563 -17.33920 -16.84890 -16.16970 -16.08082 -15.77970 -15.30702 -15.14822 -14.93770 -14.76045 -14.46528 -13.99397 -13.78280 -13.50357 -13.42855 -13.14880 -13.09504 -12.80210 -12.48787 -12.10826 -12.05172 -12.01818 -11.97105 -11.42851 -11.24581 -11.08187 -10.96607 -10.81411 -10.74820 -10.67627 -10.50430 -10.36638 -10.07795 -9.79701 -9.53039 -9.47196 -9.10690 -8.96424 -8.82818 -8.55129 -8.41675 -6.51268 -6.04696 -3.71097 1.18435 1.32053 2.49131 3.17587 3.37520 3.38054 3.47458 3.55682 3.71825 4.12893 4.28834 4.50717 4.56813 4.68296 4.80603 4.83829 4.86283 4.88610 4.90810 4.97700 5.19076 5.29285 5.31390 5.41681 5.45064 5.49446 5.57406 5.62466 5.68586 5.80873 5.83068 5.84559 5.97533 6.02804 6.05358 6.09583 6.14055 6.25085 6.32863 6.36631 6.40361 6.48198 6.54640 6.57428 6.63162 6.73077 6.89601 6.89898 7.00940 7.29392 7.59171 8.07116 8.31074 8.46162 8.99093 9.61773 10.11003 11.05669 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002337 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.462914 B =11978.684612 C =12446.294018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.885 3.115 4 H -0.269 1.269 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.285 4.285 8 H 0.070 0.930 9 N -0.573 5.573 10 C 0.155 3.845 11 C -0.146 4.146 12 C 0.122 3.878 13 N -0.723 5.723 14 C 0.538 3.462 15 O -0.532 6.532 16 C -0.157 4.157 17 H 0.133 0.867 18 C -0.121 4.121 19 H 0.130 0.870 20 C -0.062 4.062 21 C -0.055 4.055 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.097 4.097 26 C -0.084 4.084 27 C -0.098 4.098 28 H 0.125 0.875 29 C 0.110 3.890 30 C -0.201 4.201 31 C -0.213 4.213 32 H 0.265 0.735 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.148 -16.659 0.538 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.713 3.287 4 H -0.195 1.195 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.414 4.414 8 H 0.088 0.912 9 N -0.293 5.293 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.324 3.676 15 O -0.409 6.409 16 C -0.178 4.178 17 H 0.151 0.849 18 C -0.140 4.140 19 H 0.147 0.853 20 C -0.098 4.098 21 C -0.055 4.055 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.148 4.148 25 C -0.115 4.115 26 C -0.084 4.084 27 C -0.116 4.116 28 H 0.143 0.857 29 C 0.002 3.998 30 C -0.238 4.238 31 C -0.254 4.254 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.104 0.896 47 H 0.139 0.861 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.435 -16.179 1.262 25.320 hybrid contribution -0.104 0.778 -0.726 1.069 sum 19.332 -15.401 0.537 24.723 Atomic orbital electron populations 1.69872 1.06284 1.27138 1.50471 1.25830 0.95011 0.98638 0.95261 0.86832 0.80261 0.83421 0.78170 1.19506 1.23274 1.19519 1.18545 0.83297 0.93445 1.46075 0.91201 1.43555 1.04373 1.66478 1.14863 1.20783 0.92380 0.89675 0.94270 1.22403 0.98185 0.99733 0.98337 1.21406 0.99740 0.79302 0.99699 1.46066 1.44752 1.10903 1.35614 1.19607 0.79117 0.86805 0.82107 1.90643 1.45478 1.74824 1.29971 1.22414 0.95349 0.94224 1.05859 0.84878 1.22913 0.98683 0.99587 0.92805 0.85268 1.20444 0.93873 0.97982 0.97492 1.20345 0.94363 0.96424 0.94381 1.20600 0.95620 0.97316 0.99319 1.21015 0.99865 0.99432 0.92838 1.20962 0.97727 0.99429 0.96701 1.20640 0.95573 0.96896 0.98412 1.19572 0.96228 0.98747 0.93893 1.21436 0.91223 1.00277 0.98691 0.85749 1.21294 0.94920 0.99681 0.83928 1.23550 1.01987 0.94279 1.04027 1.23356 1.04680 0.97135 1.00221 0.92524 0.94447 0.92250 0.91308 0.92080 0.92039 0.91636 0.76681 0.87129 0.90510 0.86346 0.86026 0.86019 0.86433 0.89583 0.86138 0.90726 0.91175 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.97 55.49 0.78 -25.78 16 2 C 0.06 1.53 3.70 -17.43 -0.06 1.47 16 3 Si 0.88 21.95 24.70 -169.99 -4.20 17.75 16 4 H -0.27 -6.35 5.64 56.52 0.32 -6.04 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.28 -7.68 9.24 -15.06 -0.14 -7.82 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 9 N -0.57 -13.14 2.10 -165.66 -0.35 -13.49 16 10 C 0.16 2.98 5.71 -4.05 -0.02 2.96 16 11 C -0.15 -2.34 5.65 -26.73 -0.15 -2.49 16 12 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 13 N -0.72 -9.06 5.56 -60.30 -0.33 -9.40 16 14 C 0.54 7.05 6.92 -10.98 -0.08 6.98 16 15 O -0.53 -8.57 12.55 5.56 0.07 -8.50 16 16 C -0.16 -1.50 6.18 -91.77 -0.57 -2.07 16 17 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -1.07 7.06 -90.16 -0.64 -1.71 16 19 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.06 -0.64 5.77 -27.52 -0.16 -0.80 16 21 C -0.06 -0.65 4.87 -104.44 -0.51 -1.16 16 22 C -0.11 -1.25 10.04 -39.46 -0.40 -1.65 16 23 C -0.11 -1.19 10.05 -39.66 -0.40 -1.59 16 24 C -0.13 -1.35 10.05 -39.65 -0.40 -1.75 16 25 C -0.10 -1.06 10.04 -39.46 -0.40 -1.46 16 26 C -0.08 -0.96 5.27 -104.45 -0.55 -1.52 16 27 C -0.10 -0.90 6.85 -91.46 -0.63 -1.53 16 28 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 29 C 0.11 2.32 5.13 -67.93 -0.35 1.97 16 30 C -0.20 -4.39 6.56 -26.73 -0.18 -4.56 16 31 C -0.21 -4.19 10.36 -26.73 -0.28 -4.47 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 40 H 0.11 1.38 6.21 -51.93 -0.32 1.06 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 47 H 0.12 3.06 4.94 -51.93 -0.26 2.81 16 48 H 0.07 1.50 7.74 -51.93 -0.40 1.10 16 49 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 50 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -32.01 395.49 -12.14 -44.15 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.15 Total: 8.75 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -5.92 Total: -19.45 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.09 Total: -48.66 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.20 Total: 17.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.01 -12.14 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713046292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.923 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds