Wall clock time and date at job start Tue Mar 31 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46964 * 272.85527 * 3 2 1 5 5 H 1.48503 * 109.46913 * 32.85024 * 3 2 1 6 6 H 1.48491 * 109.46996 * 152.85416 * 3 2 1 7 7 C 1.38805 * 120.00023 * 179.72206 * 2 1 3 8 8 H 1.07997 * 120.00351 * 344.31168 * 7 2 1 9 9 N 1.36947 * 119.99975 * 164.31135 * 7 2 1 10 10 C 1.46492 * 119.99799 * 126.57362 * 9 7 2 11 11 C 1.52999 * 109.47485 * 90.00181 * 10 9 7 12 12 C 1.53001 * 109.47645 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46865 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99373 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00445 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99667 * 179.97438 * 14 13 12 17 17 H 1.08998 * 115.54561 * 325.59547 * 16 14 13 18 18 C 1.53041 * 117.48167 * 180.02562 * 16 14 13 19 19 H 1.09003 * 119.41331 * 140.82205 * 18 16 14 20 20 C 1.53444 * 118.58093 * 343.85291 * 18 16 14 21 21 C 1.50975 * 107.03359 * 297.00279 * 20 18 16 22 22 C 1.38783 * 129.72319 * 179.64100 * 21 20 18 23 23 C 1.38010 * 120.31242 * 180.09733 * 22 21 20 24 24 C 1.38258 * 119.87864 * 359.97438 * 23 22 21 25 25 C 1.38019 * 119.88235 * 359.97438 * 24 23 22 26 26 C 1.37805 * 110.46072 * 359.70607 * 21 20 18 27 27 C 1.50951 * 110.48264 * 359.90962 * 26 21 20 28 28 H 1.08998 * 117.44285 * 220.73739 * 27 26 21 29 29 C 1.46502 * 120.00042 * 306.57717 * 9 7 2 30 30 C 1.53001 * 117.49906 * 2.77767 * 29 9 7 31 31 C 1.52996 * 60.00092 * 252.51621 * 30 29 9 32 32 H 0.97004 * 119.99900 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 209.99894 * 10 9 7 34 34 H 1.09007 * 109.47482 * 329.99957 * 10 9 7 35 35 H 1.09008 * 109.46996 * 300.00308 * 11 10 9 36 36 H 1.09007 * 109.46944 * 59.99446 * 11 10 9 37 37 H 1.08995 * 109.47142 * 300.00074 * 12 11 10 38 38 H 1.08998 * 109.46642 * 60.00313 * 12 11 10 39 39 H 0.96995 * 120.00795 * 0.02562 * 13 12 11 40 40 H 1.09001 * 109.91955 * 56.35162 * 20 18 16 41 41 H 1.08997 * 109.92042 * 177.65924 * 20 18 16 42 42 H 1.08001 * 119.84515 * 0.10011 * 22 21 20 43 43 H 1.07997 * 120.06532 * 179.97438 * 23 22 21 44 44 H 1.07989 * 120.06049 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.84035 * 180.02562 * 25 24 23 46 46 H 1.08994 * 115.55137 * 148.48620 * 29 9 7 47 47 H 1.09005 * 117.49588 * 0.02562 * 30 29 9 48 48 H 1.08996 * 117.49906 * 145.01770 * 30 29 9 49 49 H 1.09008 * 117.49671 * 252.51617 * 31 30 29 50 50 H 1.08994 * 117.50182 * 107.49291 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4373 2.0814 -1.3984 5 1 1.4791 2.6346 0.7595 6 1 3.5766 1.4236 0.6388 7 6 2.0103 -1.2021 0.0058 8 1 1.5005 -2.1187 0.2632 9 7 3.3415 -1.2257 -0.3148 10 6 4.3042 -1.8442 0.5999 11 6 4.4569 -3.3267 0.2536 12 6 5.4629 -3.9726 1.2084 13 7 5.6085 -5.3922 0.8771 14 6 6.4489 -6.1678 1.5904 15 8 7.0842 -5.6907 2.5067 16 6 6.5983 -7.6282 1.2500 17 1 5.6947 -8.1225 0.8933 18 6 7.5677 -8.4553 2.0975 19 1 7.3011 -9.4756 2.3733 20 6 8.5928 -7.7185 2.9697 21 6 9.4934 -6.9457 2.0365 22 6 10.5691 -6.1178 2.3254 23 6 11.2646 -5.4984 1.3069 24 6 10.8889 -5.7036 -0.0078 25 6 9.8200 -6.5275 -0.2968 26 6 9.1188 -7.1504 0.7262 27 6 7.9328 -8.0814 0.6552 28 1 7.9310 -8.8334 -0.1338 29 6 3.8027 -0.6324 -1.5723 30 6 2.7583 0.0555 -2.4538 31 6 3.3458 -1.2931 -2.8745 32 1 -0.4850 0.8401 -0.0004 33 1 5.2694 -1.3471 0.5021 34 1 3.9468 -1.7455 1.6249 35 1 3.4918 -3.8239 0.3513 36 1 4.8143 -3.4254 -0.7715 37 1 6.4279 -3.4754 1.1103 38 1 5.1058 -3.8739 2.2335 39 1 5.1008 -5.7738 0.1440 40 1 8.0811 -7.0325 3.6448 41 1 9.1795 -8.4377 3.5412 42 1 10.8634 -5.9574 3.3521 43 1 12.1008 -4.8546 1.5362 44 1 11.4307 -5.2200 -0.8070 45 1 9.5273 -6.6876 -1.3241 46 1 4.8044 -0.2032 -1.5501 47 1 1.7281 0.0670 -2.0978 48 1 3.0728 0.9376 -3.0116 49 1 4.0470 -1.2982 -3.7092 50 1 2.7022 -2.1691 -2.7956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713046292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:03 Heat of formation + Delta-G solvation = 56.466653 kcal Electronic energy + Delta-G solvation = -29041.802993 eV Core-core repulsion = 25228.598232 eV Total energy + Delta-G solvation = -3813.204761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22342 -39.99211 -39.17347 -37.79846 -36.51678 -34.85302 -34.05032 -32.72140 -31.70368 -31.20157 -28.64075 -27.45088 -25.79996 -24.50628 -23.36271 -23.26094 -22.54608 -22.13389 -21.58135 -21.27916 -20.56833 -18.80573 -18.15353 -17.25455 -16.97700 -16.87093 -16.60603 -16.44515 -16.29555 -15.83082 -15.59076 -15.39325 -15.09139 -14.90676 -14.58300 -14.29361 -13.98432 -13.88763 -13.75520 -13.57041 -13.52785 -13.22128 -12.85792 -12.72018 -12.70485 -12.41649 -12.31183 -12.17991 -12.11338 -11.84444 -11.73554 -11.58838 -11.52404 -11.26976 -11.22543 -10.83042 -10.51177 -10.43106 -10.05771 -9.63289 -9.35018 -8.41358 -8.15934 -5.83821 0.39314 0.51653 1.41413 1.45256 1.56225 1.57489 2.20565 2.45533 2.59260 2.95875 3.00447 3.17473 3.38934 3.40378 3.56846 3.81306 3.98611 4.02868 4.10943 4.16387 4.18511 4.19603 4.24581 4.26642 4.33761 4.44330 4.54424 4.54897 4.60936 4.64886 4.71536 4.81363 4.84187 4.90970 4.92344 4.93313 4.99307 4.99665 5.09964 5.20608 5.28063 5.33210 5.36672 5.45605 5.53387 5.56475 5.56841 5.61603 5.75671 5.98509 6.13405 6.26637 6.62036 7.09837 7.32921 7.59023 8.09207 8.95060 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.002337 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.462914 B =11978.684612 C =12446.294018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.247 1.247 5 H -0.316 1.316 6 H -0.265 1.265 7 C -0.274 4.274 8 H 0.028 0.972 9 N -0.586 5.586 10 C 0.149 3.851 11 C -0.124 4.124 12 C 0.136 3.864 13 N -0.718 5.718 14 C 0.530 3.470 15 O -0.567 6.567 16 C -0.160 4.160 17 H 0.165 0.835 18 C -0.118 4.118 19 H 0.161 0.839 20 C -0.064 4.064 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.139 4.139 25 C -0.111 4.111 26 C -0.102 4.102 27 C -0.093 4.093 28 H 0.153 0.847 29 C 0.099 3.901 30 C -0.218 4.218 31 C -0.189 4.189 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.411 0.589 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.454 -17.520 -1.273 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.171 1.171 5 H -0.245 1.245 6 H -0.189 1.189 7 C -0.403 4.403 8 H 0.045 0.955 9 N -0.306 5.306 10 C 0.024 3.976 11 C -0.164 4.164 12 C 0.011 3.989 13 N -0.370 5.370 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.181 4.181 17 H 0.183 0.817 18 C -0.137 4.137 19 H 0.179 0.821 20 C -0.101 4.101 21 C -0.077 4.077 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.128 4.128 26 C -0.102 4.102 27 C -0.111 4.111 28 H 0.170 0.830 29 C -0.007 4.007 30 C -0.256 4.256 31 C -0.229 4.229 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.152 0.848 46 H 0.135 0.865 47 H 0.099 0.901 48 H 0.115 0.885 49 H 0.128 0.872 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.767 -17.071 -0.578 27.669 hybrid contribution -0.784 0.993 -0.139 1.273 sum 20.982 -16.078 -0.717 26.444 Atomic orbital electron populations 1.69988 1.07994 1.27750 1.53042 1.26390 0.95394 1.01667 0.95312 0.85935 0.78797 0.79407 0.79081 1.17144 1.24534 1.18946 1.18305 0.85142 0.91861 1.45022 0.95464 1.43646 1.03322 1.67172 1.16484 1.20913 0.92303 0.91499 0.92898 1.22068 0.97724 0.97493 0.99083 1.21081 0.98734 0.80643 0.98423 1.45987 1.44960 1.10020 1.36024 1.20306 0.78230 0.88340 0.81371 1.90643 1.46724 1.75845 1.31452 1.22526 0.96923 0.91792 1.06838 0.81729 1.23115 0.97743 1.00499 0.92298 0.82129 1.20456 0.94302 0.97900 0.97433 1.20658 0.94826 0.96979 0.95265 1.20883 0.96207 0.97910 1.00053 1.21319 1.00338 0.99521 0.92918 1.21299 0.97817 0.99338 0.97230 1.20961 0.95736 0.96902 0.99241 1.19942 0.97137 0.99290 0.93794 1.21577 0.89855 1.00052 0.99627 0.82994 1.21568 0.95819 0.99998 0.83358 1.23471 1.00130 0.96543 1.05429 1.23316 1.04040 0.95031 1.00535 0.92683 0.92175 0.93840 0.93069 0.91125 0.92431 0.93035 0.75258 0.89771 0.88964 0.85865 0.84203 0.84001 0.84813 0.86548 0.90061 0.88454 0.87183 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 13.97 21.65 0.30 -57.60 16 2 C 0.01 0.60 3.70 84.86 0.31 0.92 16 3 Si 0.94 45.27 24.70 68.60 1.69 46.96 16 4 H -0.25 -10.89 5.64 99.48 0.56 -10.33 16 5 H -0.32 -15.71 7.11 99.48 0.71 -15.01 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.27 -15.11 9.24 84.03 0.78 -14.33 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 N -0.59 -26.39 2.10 -678.04 -1.42 -27.81 16 10 C 0.15 5.60 5.71 86.38 0.49 6.09 16 11 C -0.12 -3.85 5.65 30.59 0.17 -3.68 16 12 C 0.14 3.84 5.67 86.38 0.49 4.33 16 13 N -0.72 -17.14 5.56 -463.06 -2.57 -19.71 16 14 C 0.53 13.34 6.92 87.66 0.61 13.95 16 15 O -0.57 -18.38 12.55 -3.03 -0.04 -18.41 16 16 C -0.16 -2.66 6.18 -11.54 -0.07 -2.73 16 17 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 18 C -0.12 -1.81 7.06 -10.50 -0.07 -1.89 16 19 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 20 C -0.06 -1.31 5.77 30.08 0.17 -1.14 16 21 C -0.08 -1.80 4.87 -19.75 -0.10 -1.90 16 22 C -0.13 -3.02 10.04 22.35 0.22 -2.80 16 23 C -0.12 -2.49 10.05 22.22 0.22 -2.27 16 24 C -0.14 -2.69 10.05 22.22 0.22 -2.47 16 25 C -0.11 -2.23 10.04 22.35 0.22 -2.01 16 26 C -0.10 -2.18 5.27 -19.76 -0.10 -2.28 16 27 C -0.09 -1.46 6.85 -11.34 -0.08 -1.54 16 28 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 29 C 0.10 3.94 5.13 44.99 0.23 4.17 16 30 C -0.22 -9.04 6.56 30.59 0.20 -8.84 16 31 C -0.19 -6.87 10.36 30.59 0.32 -6.56 16 32 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 33 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.04 1.75 8.04 -2.38 -0.02 1.73 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.41 7.75 8.47 -92.71 -0.79 6.97 16 40 H 0.08 2.17 6.21 -2.39 -0.01 2.16 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.14 2.03 8.06 -2.92 -0.02 2.01 16 45 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 46 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 47 H 0.08 4.11 4.94 -2.38 -0.01 4.10 16 48 H 0.10 3.56 7.74 -2.39 -0.02 3.54 16 49 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 50 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -72.41 395.49 2.22 -70.20 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.00 Total: 31.34 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.25 Total: -24.96 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -3.69 Total: -105.12 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.04 Total: -18.41 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.69 Total: 46.96 kcal Total: -72.41 2.22 -70.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713046292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.663 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds