Wall clock time and date at job start Tue Mar 31 2020 23:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00169 * 2 1 4 4 H 1.48494 * 109.47059 * 270.00530 * 3 2 1 5 5 H 1.48503 * 109.46853 * 30.00022 * 3 2 1 6 6 H 1.48499 * 109.47265 * 150.00139 * 3 2 1 7 7 C 1.38957 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99371 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00256 * 179.97438 * 7 2 1 10 10 C 1.34769 * 120.00163 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99916 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00087 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47063 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00119 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47363 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.46497 * 305.00072 * 15 14 13 17 17 C 1.52996 * 109.46969 * 64.99912 * 15 14 13 18 18 C 1.53002 * 109.46972 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.46817 * 299.99733 * 18 17 15 20 20 C 1.53006 * 109.47127 * 60.00361 * 19 18 17 21 21 C 1.52997 * 109.47143 * 184.99843 * 15 14 13 22 22 H 1.09002 * 109.47153 * 60.00035 * 21 15 14 23 23 N 1.46497 * 109.46983 * 300.00028 * 21 15 14 24 24 C 1.34778 * 119.99664 * 155.00345 * 23 21 15 25 25 O 1.21283 * 120.00537 * 359.97438 * 24 23 21 26 26 C 1.50701 * 119.99875 * 179.97438 * 24 23 21 27 27 C 1.50702 * 109.47373 * 179.97438 * 26 24 23 28 28 N 1.34769 * 120.00457 * 179.97438 * 27 26 24 29 29 O 1.21291 * 119.99845 * 359.97438 * 27 26 24 30 30 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99925 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47616 * 60.00014 * 12 10 9 33 33 H 1.09000 * 109.47232 * 299.99383 * 12 10 9 34 34 H 1.00900 * 111.00032 * 303.94896 * 13 12 10 35 35 H 1.08996 * 109.46836 * 59.99426 * 14 13 12 36 36 H 1.09001 * 109.47228 * 300.00107 * 14 13 12 37 37 H 1.08996 * 109.47452 * 59.99938 * 17 15 14 38 38 H 1.09000 * 109.47054 * 300.00097 * 17 15 14 39 39 H 1.09002 * 109.47070 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47407 * 59.99513 * 18 17 15 41 41 H 1.09001 * 109.47502 * 300.00518 * 19 18 17 42 42 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 43 43 H 1.08993 * 109.46955 * 60.00011 * 20 19 18 44 44 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 45 45 H 0.96991 * 120.00469 * 334.99986 * 23 21 15 46 46 H 1.08997 * 109.47324 * 299.99591 * 26 24 23 47 47 H 1.08996 * 109.47172 * 59.99894 * 26 24 23 48 48 H 0.97001 * 119.99945 * 359.97438 * 28 27 26 49 49 H 0.97000 * 120.00551 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5606 -2.3705 -0.0011 13 7 6.0503 -3.7556 -0.0017 14 6 7.5188 -3.7948 -0.0023 15 6 7.9902 -5.2504 -0.0023 16 1 7.5416 -5.7774 0.8398 17 6 7.5667 -5.9235 -1.3093 18 6 8.0375 -7.3793 -1.3091 19 6 9.5617 -7.4223 -1.1838 20 6 9.9852 -6.7491 0.1233 21 6 9.5144 -5.2929 0.1227 22 1 9.8161 -4.8133 1.0539 23 7 10.1171 -4.5844 -1.0091 24 6 11.3489 -4.0503 -0.8910 25 8 11.9582 -4.1558 0.1524 26 6 11.9692 -3.3220 -2.0554 27 6 13.3375 -2.8249 -1.6659 28 7 14.0844 -2.1409 -2.5550 29 8 13.7666 -3.0404 -0.5521 30 1 -0.4850 0.8400 0.0004 31 1 3.8648 -0.3633 -0.0007 32 1 5.9240 -1.8567 0.8888 33 1 5.9240 -1.8568 -0.8911 34 1 5.6749 -4.2722 0.7795 35 1 7.8960 -3.2910 0.8876 36 1 7.8954 -3.2906 -0.8923 37 1 8.0151 -5.3965 -2.1514 38 1 6.4808 -5.8933 -1.3984 39 1 7.7354 -7.8591 -2.2401 40 1 7.5888 -7.9062 -0.4670 41 1 10.0106 -6.8954 -2.0258 42 1 9.8973 -8.4594 -1.1840 43 1 9.5365 -7.2760 0.9653 44 1 11.0711 -6.7801 0.2128 45 1 9.6298 -4.4997 -1.8434 46 1 12.0568 -4.0009 -2.9036 47 1 11.3404 -2.4754 -2.3311 48 1 13.7414 -1.9689 -3.4459 49 1 14.9653 -1.8213 -2.3044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716509727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:31 Heat of formation + Delta-G solvation = -120.188648 kcal Electronic energy + Delta-G solvation = -29832.323136 eV Core-core repulsion = 25600.608763 eV Total energy + Delta-G solvation = -4231.714373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83049 -39.66137 -38.49166 -37.94887 -35.46573 -34.14420 -33.91827 -33.74090 -31.73638 -31.40965 -31.16063 -29.44145 -27.25175 -24.84400 -23.36688 -22.95610 -22.06790 -21.26232 -20.58504 -19.42284 -19.22520 -18.37521 -18.01313 -17.53628 -16.48853 -16.31265 -16.13470 -15.80683 -15.59228 -15.24192 -14.91487 -14.86050 -14.18096 -14.13250 -14.07938 -13.88636 -13.75565 -13.64106 -13.22445 -12.89452 -12.63469 -12.41942 -12.30976 -12.28567 -12.21556 -11.82325 -11.81598 -11.63320 -11.18358 -11.07923 -10.68429 -10.61141 -10.51296 -10.44421 -10.17988 -10.03459 -9.98897 -9.69580 -9.58594 -9.17509 -8.60172 -8.20630 -8.14154 -6.32442 -3.83858 2.27039 2.50993 2.65793 3.01278 3.05306 3.13769 3.34764 3.72856 3.99948 4.09045 4.21614 4.49125 4.56182 4.57970 4.62960 4.74784 4.84559 4.85586 4.91349 5.08411 5.15249 5.21909 5.28468 5.31355 5.42028 5.45754 5.53872 5.65990 5.68170 5.74539 5.80301 5.89825 5.92616 5.94177 6.00653 6.06911 6.22991 6.34056 6.39149 6.39518 6.89905 7.07345 7.28320 7.55136 7.57332 7.90751 8.10522 8.13302 8.58462 8.93731 9.41209 9.81481 10.80690 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.002338 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.090607 B =11973.829031 C =13860.629134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.666 5.666 14 C 0.064 3.936 15 C -0.091 4.091 16 H 0.086 0.914 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.129 4.129 21 C 0.155 3.845 22 H 0.087 0.913 23 N -0.722 5.722 24 C 0.511 3.489 25 O -0.497 6.497 26 C -0.169 4.169 27 C 0.515 3.485 28 N -0.861 5.861 29 O -0.497 6.497 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.399 0.601 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.399 0.601 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.634 -7.180 -8.300 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.065 4.065 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.144 4.144 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.168 4.168 21 C 0.050 3.950 22 H 0.105 0.895 23 N -0.377 5.377 24 C 0.295 3.705 25 O -0.369 6.369 26 C -0.213 4.213 27 C 0.297 3.703 28 N -0.427 5.427 29 O -0.369 6.369 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.234 0.766 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.227 0.773 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 26.511 -8.161 -7.390 28.706 hybrid contribution 0.667 2.096 -0.046 2.200 sum 27.178 -6.065 -7.437 28.823 Atomic orbital electron populations 1.69617 1.05641 1.27497 1.49371 1.25044 0.95497 0.97980 0.97673 0.86669 0.79764 0.84056 0.78874 1.19611 1.20193 1.19542 1.19428 0.79250 0.96617 1.48065 0.86282 1.42213 1.07542 1.06184 1.67117 1.19713 0.88210 0.84544 0.83953 1.90565 1.69448 1.30922 1.53704 1.21692 0.94980 0.90620 1.01177 1.60076 1.05936 1.12453 1.51368 1.21986 0.88455 0.95658 1.00440 1.21433 0.93101 0.96280 1.00188 0.89583 1.21493 1.02904 0.94274 0.95779 1.21596 0.95207 0.97252 1.01941 1.21496 0.96205 1.00081 0.97590 1.21906 1.01405 0.95091 0.98372 1.20933 0.91925 0.92175 0.89963 0.89511 1.46096 1.17367 1.57267 1.16995 1.19907 0.81764 0.79690 0.89188 1.90867 1.60530 1.56802 1.28741 1.21613 0.96233 1.03314 1.00099 1.20005 0.86686 0.78413 0.85182 1.43874 1.21656 1.60217 1.16956 1.90925 1.71721 1.54243 1.19975 0.91610 0.79714 0.93863 0.89635 0.83021 0.95457 0.91201 0.92685 0.89544 0.92035 0.91867 0.92272 0.92356 0.91019 0.91532 0.76555 0.86099 0.85982 0.77264 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.91 5.09 -10.97 -0.06 -13.96 16 10 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 11 O -0.56 -14.85 15.78 5.54 0.09 -14.76 16 12 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 13 N -0.67 -9.46 5.58 -115.06 -0.64 -10.10 16 14 C 0.06 0.68 4.84 -3.82 -0.02 0.66 16 15 C -0.09 -0.81 2.12 -90.62 -0.19 -1.01 16 16 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.11 -0.93 4.92 -26.73 -0.13 -1.07 16 18 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 19 C -0.12 -0.86 5.77 -26.73 -0.15 -1.01 16 20 C -0.13 -1.10 5.61 -26.71 -0.15 -1.25 16 21 C 0.15 1.38 2.23 -67.91 -0.15 1.23 16 22 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 23 N -0.72 -5.46 3.62 -53.79 -0.19 -5.65 16 24 C 0.51 4.95 7.79 -10.98 -0.09 4.86 16 25 O -0.50 -7.48 13.84 -18.96 -0.26 -7.74 16 26 C -0.17 -0.93 6.19 -29.03 -0.18 -1.11 16 27 C 0.51 4.41 8.09 -10.99 -0.09 4.32 16 28 N -0.86 -3.53 8.87 31.22 0.28 -3.25 16 29 O -0.50 -7.29 15.02 -18.97 -0.28 -7.57 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.35 5.29 8.43 -39.29 -0.33 4.96 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.68 7.61 -51.93 -0.40 0.28 16 37 H 0.05 0.42 6.51 -51.93 -0.34 0.08 16 38 H 0.09 0.98 7.75 -51.93 -0.40 0.58 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.41 7.61 -51.93 -0.39 0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.40 2.18 6.67 -40.82 -0.27 1.90 16 46 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.40 0.24 8.83 -40.82 -0.36 -0.12 16 49 H 0.40 1.53 8.93 -40.82 -0.36 1.16 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -38.77 394.27 -8.44 -47.21 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.69 Total: 12.78 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.67 Total: 7.45 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.16 Total: -57.81 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.46 Total: -30.07 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.77 -8.44 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716509727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.976 kcal (2) G-P(sol) polarization free energy of solvation -38.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds