Wall clock time and date at job start Tue Mar 31 2020 22:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47519 * 119.99950 * 3 2 1 6 6 O 1.21281 * 120.00191 * 120.00114 * 5 3 2 7 7 N 1.34779 * 119.99494 * 299.99920 * 5 3 2 8 8 C 1.47212 * 126.70677 * 359.68784 * 7 5 3 9 9 C 1.54058 * 106.23574 * 148.68943 * 8 7 5 10 10 H 1.08991 * 111.72570 * 140.80582 * 9 8 7 11 11 C 1.53784 * 109.51622 * 266.26709 * 9 8 7 12 12 N 1.47220 * 106.37575 * 131.52458 * 11 9 8 13 13 C 1.36935 * 126.69986 * 148.74375 * 12 11 9 14 14 H 1.08001 * 119.99666 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00492 * 0.03278 * 13 12 11 16 16 N 1.31625 * 119.99613 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00448 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47261 * 89.99524 * 17 15 13 19 19 H 1.48494 * 109.47057 * 209.99828 * 17 15 13 20 20 H 1.48501 * 109.46969 * 329.99789 * 17 15 13 21 21 C 1.47212 * 106.59458 * 328.73041 * 12 11 9 22 22 C 1.53783 * 106.37944 * 31.27074 * 21 12 11 23 23 C 1.52999 * 112.60092 * 103.50956 * 22 21 12 24 24 C 1.47214 * 126.69608 * 180.02562 * 7 5 3 25 25 C 1.50698 * 109.46822 * 239.99946 * 3 2 1 26 26 C 1.38229 * 120.00196 * 299.72257 * 25 3 2 27 27 C 1.38236 * 120.00353 * 179.78941 * 26 25 3 28 28 C 1.38239 * 119.99797 * 0.46380 * 27 26 25 29 29 C 1.38233 * 119.99581 * 359.76540 * 28 27 26 30 30 C 1.38232 * 120.00516 * 0.02562 * 29 28 27 31 31 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 33 33 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.07306 * 267.99413 * 8 7 5 35 35 H 1.08998 * 110.07422 * 29.53061 * 8 7 5 36 36 H 1.08998 * 110.07337 * 250.74928 * 11 9 8 37 37 H 1.08992 * 110.07422 * 12.24242 * 11 9 8 38 38 H 0.96999 * 119.99747 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.07414 * 272.04415 * 21 12 11 40 40 H 1.08999 * 110.07326 * 150.50092 * 21 12 11 41 41 H 1.09002 * 109.47070 * 182.60447 * 23 22 21 42 42 H 1.09002 * 109.47111 * 302.60550 * 23 22 21 43 43 H 1.09002 * 109.47155 * 62.60321 * 23 22 21 44 44 H 1.09002 * 110.07988 * 330.46070 * 24 7 5 45 45 H 1.08996 * 110.08080 * 91.95672 * 24 7 5 46 46 H 1.08005 * 119.99709 * 0.02562 * 26 25 3 47 47 H 1.07999 * 120.00561 * 180.25558 * 27 26 25 48 48 H 1.07999 * 120.00345 * 179.79331 * 28 27 26 49 49 H 1.08011 * 119.99605 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00035 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9299 1.3850 1.2304 6 8 4.1326 1.4958 1.1191 7 7 2.3683 1.3333 2.4545 8 6 0.9337 1.2077 2.7598 9 6 0.8419 0.4251 4.0836 10 1 0.0563 0.8164 4.7299 11 6 0.6690 -1.0732 3.7838 12 7 1.6510 -1.7803 4.6223 13 6 1.5178 -3.0333 5.1586 14 1 2.3110 -3.4495 5.7618 15 6 0.3633 -3.7684 4.9268 16 7 -0.6036 -3.2609 4.1919 17 14 0.1819 -5.4778 5.6577 18 1 -0.4481 -5.3785 6.9988 19 1 -0.6716 -6.3077 4.7701 20 1 1.5213 -6.1062 5.7855 21 6 2.8041 -0.8775 4.7714 22 6 2.2425 0.5536 4.7315 23 6 2.1749 1.1976 6.1177 24 6 3.0692 1.3985 3.7474 25 6 2.9299 1.3848 -1.2305 26 6 3.9128 0.4371 -1.4463 27 6 4.7046 0.5077 -2.5772 28 6 4.5199 1.5316 -3.4875 29 6 3.5402 2.4820 -3.2692 30 6 2.7455 2.4089 -2.1405 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0044 33 1 1.8500 -0.9353 0.0004 34 1 0.4877 2.1956 2.8747 35 1 0.4287 0.6589 1.9648 36 1 -0.3411 -1.3921 4.0410 37 1 0.8659 -1.2690 2.7299 38 1 -1.4101 -3.7747 4.0296 39 1 3.5052 -1.0273 3.9503 40 1 3.3000 -1.0583 5.7251 41 1 1.7284 2.1886 6.0365 42 1 1.5669 0.5780 6.7769 43 1 3.1813 1.2849 6.5272 44 1 4.0728 0.9844 3.6504 45 1 3.1225 2.4310 4.0926 46 1 4.0595 -0.3607 -0.7333 47 1 5.4698 -0.2351 -2.7480 48 1 5.1408 1.5887 -4.3693 49 1 3.3962 3.2822 -3.9802 50 1 1.9803 3.1517 -1.9698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092294271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:15 Heat of formation + Delta-G solvation = 47.700843 kcal Electronic energy + Delta-G solvation = -30743.937537 eV Core-core repulsion = 26930.352662 eV Total energy + Delta-G solvation = -3813.584875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61116 -39.37492 -37.98215 -35.27975 -34.84456 -32.72093 -31.23336 -30.85498 -30.76105 -30.02391 -27.69360 -26.24212 -25.35569 -25.08414 -22.72386 -22.53865 -21.55006 -20.36249 -20.22555 -18.98251 -18.49444 -17.13569 -16.83088 -16.57253 -15.67097 -15.46713 -15.13525 -14.95150 -14.71256 -14.10048 -13.95597 -13.86199 -13.61874 -13.39256 -13.28177 -12.89713 -12.85014 -12.58896 -12.53352 -12.18923 -12.05886 -11.73237 -11.62265 -11.42566 -11.33560 -11.10734 -10.98402 -10.91959 -10.82801 -10.76630 -10.22885 -10.15310 -9.98694 -9.88345 -9.73768 -9.47180 -9.00684 -8.83865 -8.72016 -8.68935 -8.34797 -6.89112 -5.66913 -3.11239 1.32911 1.46037 2.27347 2.84445 3.22340 3.37317 3.42986 3.44434 3.85832 4.45236 4.61435 4.70683 4.80714 4.94821 4.95727 5.01689 5.09673 5.13365 5.16239 5.25787 5.44207 5.48538 5.52197 5.54714 5.60515 5.66014 5.68872 5.80922 5.90649 5.95495 6.00629 6.02404 6.06884 6.08087 6.20590 6.31724 6.38103 6.42971 6.45287 6.53278 6.54866 6.60884 6.65286 6.66713 6.74178 6.81199 6.95210 7.01923 7.44580 7.58330 7.78867 7.82693 8.36908 8.37139 9.18693 9.79294 10.47498 11.33988 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.003421 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.056766 B = 8182.193429 C = 9065.008993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.145 4.145 3 C -0.034 4.034 4 H 0.103 0.897 5 C 0.540 3.460 6 O -0.539 6.539 7 N -0.603 5.603 8 C 0.090 3.910 9 C -0.114 4.114 10 H 0.084 0.916 11 C 0.146 3.854 12 N -0.595 5.595 13 C -0.216 4.216 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.921 5.921 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.146 3.854 22 C -0.087 4.087 23 C -0.121 4.121 24 C 0.119 3.881 25 C -0.058 4.058 26 C -0.079 4.079 27 C -0.122 4.122 28 C -0.122 4.122 29 C -0.126 4.126 30 C -0.112 4.112 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.010 0.990 38 H 0.252 0.748 39 H 0.018 0.982 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 12.801 -9.845 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.055 4.055 4 H 0.121 0.879 5 C 0.328 3.672 6 O -0.417 6.417 7 N -0.336 5.336 8 C -0.032 4.032 9 C -0.135 4.135 10 H 0.103 0.897 11 C 0.020 3.980 12 N -0.318 5.318 13 C -0.345 4.345 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.570 5.570 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.019 3.981 22 C -0.090 4.090 23 C -0.179 4.179 24 C -0.004 4.004 25 C -0.058 4.058 26 C -0.097 4.097 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.144 4.144 30 C -0.130 4.130 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.028 0.972 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.239 12.640 -9.978 16.426 hybrid contribution -0.096 -0.829 0.436 0.942 sum 3.142 11.810 -9.543 15.506 Atomic orbital electron populations 1.23913 0.95410 1.02644 0.98503 1.22541 0.95934 0.96486 1.01327 1.19418 0.96522 0.98583 0.90998 0.87903 1.19853 0.88086 0.76255 0.82963 1.90698 1.14717 1.50293 1.85970 1.48384 1.08871 1.71375 1.04931 1.22657 0.81347 0.99577 0.99658 1.23150 0.95956 1.00358 0.94020 0.89744 1.21942 0.99078 0.84373 0.92583 1.44499 1.14456 1.14460 1.58386 1.19094 1.01152 0.89633 1.24589 0.90481 1.24744 0.96706 0.98861 1.00373 1.69601 1.07760 1.36626 1.43027 0.86064 0.77492 0.83618 0.78297 1.21627 1.21654 1.20805 1.21401 0.91048 0.87577 0.98085 1.22167 0.95699 0.96699 0.94397 1.21611 1.01411 0.99572 0.95311 1.22073 0.96927 0.99045 0.82312 1.19222 0.96422 0.95711 0.94492 1.20962 0.94069 0.98292 0.96422 1.21118 0.99632 0.98695 0.94603 1.21107 0.98379 0.95209 0.99360 1.21019 0.96468 0.99248 0.97651 1.20958 0.99870 0.97641 0.94578 0.87071 0.88342 0.86486 0.92559 0.88747 0.86077 0.97227 0.93733 0.96482 0.94012 0.93130 0.91659 0.92965 0.90522 0.92197 0.86191 0.86177 0.86382 0.86262 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 12.03 29.02 0.35 -1.71 16 2 C -0.14 -1.99 7.17 -36.02 -0.26 -2.25 16 3 C -0.03 -0.46 2.23 -94.08 -0.21 -0.67 16 4 H 0.10 1.18 7.52 -51.93 -0.39 0.79 16 5 C 0.54 9.00 7.09 -10.99 -0.08 8.92 16 6 O -0.54 -10.55 15.32 5.56 0.09 -10.46 16 7 N -0.60 -9.75 3.31 -171.39 -0.57 -10.32 16 8 C 0.09 1.36 6.06 -3.10 -0.02 1.34 16 9 C -0.11 -2.02 3.68 -88.69 -0.33 -2.34 16 10 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 11 C 0.15 3.31 5.71 -3.24 -0.02 3.29 16 12 N -0.59 -14.76 3.39 -171.13 -0.58 -15.34 16 13 C -0.22 -5.88 10.34 -15.06 -0.16 -6.04 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 15 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 16 N -0.92 -25.63 10.08 55.49 0.56 -25.07 16 17 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.15 3.04 6.38 -3.25 -0.02 3.02 16 22 C -0.09 -1.48 1.09 -152.71 -0.17 -1.65 16 23 C -0.12 -1.76 8.49 37.16 0.32 -1.44 16 24 C 0.12 1.92 5.95 -3.23 -0.02 1.90 16 25 C -0.06 -0.80 4.39 -104.63 -0.46 -1.26 16 26 C -0.08 -1.14 8.03 -39.59 -0.32 -1.45 16 27 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 28 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 29 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 30 C -0.11 -1.33 9.67 -39.58 -0.38 -1.71 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.10 0.99 7.83 -52.48 -0.41 0.58 16 33 H 0.12 1.79 8.05 -52.49 -0.42 1.36 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.40 3.23 -51.93 -0.17 1.23 16 36 H 0.12 3.12 5.45 -51.93 -0.28 2.84 16 37 H 0.01 0.24 7.41 -51.93 -0.38 -0.15 16 38 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 39 H 0.02 0.39 7.40 -51.93 -0.38 0.00 16 40 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.33 7.29 -51.93 -0.38 0.95 16 45 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 46 H 0.12 1.83 7.97 -52.48 -0.42 1.41 16 47 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 49 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 50 H 0.12 1.14 7.95 -52.49 -0.42 0.72 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -31.11 391.56 -10.49 -41.60 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.81 Total: 4.96 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.06 Total: -7.88 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.59 Total: -50.72 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.11 -10.49 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092294271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.304 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds