Wall clock time and date at job start Tue Mar 31 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47519 * 119.99950 * 3 2 1 6 6 O 1.21281 * 120.00191 * 120.00114 * 5 3 2 7 7 N 1.34779 * 119.99494 * 299.99920 * 5 3 2 8 8 C 1.47212 * 126.70677 * 359.68784 * 7 5 3 9 9 C 1.54058 * 106.23574 * 148.68943 * 8 7 5 10 10 H 1.08991 * 111.72570 * 140.80582 * 9 8 7 11 11 C 1.53784 * 109.51622 * 266.26709 * 9 8 7 12 12 N 1.47220 * 106.37575 * 131.52458 * 11 9 8 13 13 C 1.36935 * 126.69986 * 148.74375 * 12 11 9 14 14 H 1.08001 * 119.99666 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00492 * 0.03278 * 13 12 11 16 16 N 1.31625 * 119.99613 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00448 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47261 * 89.99524 * 17 15 13 19 19 H 1.48494 * 109.47057 * 209.99828 * 17 15 13 20 20 H 1.48501 * 109.46969 * 329.99789 * 17 15 13 21 21 C 1.47212 * 106.59458 * 328.73041 * 12 11 9 22 22 C 1.53783 * 106.37944 * 31.27074 * 21 12 11 23 23 C 1.52999 * 112.60092 * 103.50956 * 22 21 12 24 24 C 1.47214 * 126.69608 * 180.02562 * 7 5 3 25 25 C 1.50698 * 109.46822 * 239.99946 * 3 2 1 26 26 C 1.38229 * 120.00196 * 299.72257 * 25 3 2 27 27 C 1.38236 * 120.00353 * 179.78941 * 26 25 3 28 28 C 1.38239 * 119.99797 * 0.46380 * 27 26 25 29 29 C 1.38233 * 119.99581 * 359.76540 * 28 27 26 30 30 C 1.38232 * 120.00516 * 0.02562 * 29 28 27 31 31 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 33 33 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.07306 * 267.99413 * 8 7 5 35 35 H 1.08998 * 110.07422 * 29.53061 * 8 7 5 36 36 H 1.08998 * 110.07337 * 250.74928 * 11 9 8 37 37 H 1.08992 * 110.07422 * 12.24242 * 11 9 8 38 38 H 0.96999 * 119.99747 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.07414 * 272.04415 * 21 12 11 40 40 H 1.08999 * 110.07326 * 150.50092 * 21 12 11 41 41 H 1.09002 * 109.47070 * 182.60447 * 23 22 21 42 42 H 1.09002 * 109.47111 * 302.60550 * 23 22 21 43 43 H 1.09002 * 109.47155 * 62.60321 * 23 22 21 44 44 H 1.09002 * 110.07988 * 330.46070 * 24 7 5 45 45 H 1.08996 * 110.08080 * 91.95672 * 24 7 5 46 46 H 1.08005 * 119.99709 * 0.02562 * 26 25 3 47 47 H 1.07999 * 120.00561 * 180.25558 * 27 26 25 48 48 H 1.07999 * 120.00345 * 179.79331 * 28 27 26 49 49 H 1.08011 * 119.99605 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00035 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9299 1.3850 1.2304 6 8 4.1326 1.4958 1.1191 7 7 2.3683 1.3333 2.4545 8 6 0.9337 1.2077 2.7598 9 6 0.8419 0.4251 4.0836 10 1 0.0563 0.8164 4.7299 11 6 0.6690 -1.0732 3.7838 12 7 1.6510 -1.7803 4.6223 13 6 1.5178 -3.0333 5.1586 14 1 2.3110 -3.4495 5.7618 15 6 0.3633 -3.7684 4.9268 16 7 -0.6036 -3.2609 4.1919 17 14 0.1819 -5.4778 5.6577 18 1 -0.4481 -5.3785 6.9988 19 1 -0.6716 -6.3077 4.7701 20 1 1.5213 -6.1062 5.7855 21 6 2.8041 -0.8775 4.7714 22 6 2.2425 0.5536 4.7315 23 6 2.1749 1.1976 6.1177 24 6 3.0692 1.3985 3.7474 25 6 2.9299 1.3848 -1.2305 26 6 3.9128 0.4371 -1.4463 27 6 4.7046 0.5077 -2.5772 28 6 4.5199 1.5316 -3.4875 29 6 3.5402 2.4820 -3.2692 30 6 2.7455 2.4089 -2.1405 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0044 33 1 1.8500 -0.9353 0.0004 34 1 0.4877 2.1956 2.8747 35 1 0.4287 0.6589 1.9648 36 1 -0.3411 -1.3921 4.0410 37 1 0.8659 -1.2690 2.7299 38 1 -1.4101 -3.7747 4.0296 39 1 3.5052 -1.0273 3.9503 40 1 3.3000 -1.0583 5.7251 41 1 1.7284 2.1886 6.0365 42 1 1.5669 0.5780 6.7769 43 1 3.1813 1.2849 6.5272 44 1 4.0728 0.9844 3.6504 45 1 3.1225 2.4310 4.0926 46 1 4.0595 -0.3607 -0.7333 47 1 5.4698 -0.2351 -2.7480 48 1 5.1408 1.5887 -4.3693 49 1 3.3962 3.2822 -3.9802 50 1 1.9803 3.1517 -1.9698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092294271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:14 Heat of formation + Delta-G solvation = 31.735997 kcal Electronic energy + Delta-G solvation = -30744.629824 eV Core-core repulsion = 26930.352662 eV Total energy + Delta-G solvation = -3814.277163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89004 -40.54423 -39.22408 -36.65770 -36.24208 -34.34352 -32.52156 -32.14732 -31.75108 -31.61695 -28.80928 -27.89680 -26.71618 -26.65830 -24.14975 -23.60804 -22.55152 -21.92953 -21.49848 -20.32790 -19.77226 -18.77533 -18.22046 -17.65804 -17.00103 -16.79943 -16.57546 -16.14605 -15.98480 -15.56366 -15.47275 -15.13410 -14.94473 -14.85766 -14.25143 -14.17275 -13.98181 -13.83535 -13.55952 -13.46264 -13.34823 -13.32452 -13.14344 -12.94697 -12.75187 -12.68346 -12.36019 -12.28907 -12.02123 -11.99528 -11.81302 -11.79955 -11.55222 -11.47517 -11.25640 -11.05757 -10.77613 -10.10771 -9.77337 -9.65556 -9.60625 -8.90117 -7.73876 -5.21542 0.40036 0.53715 1.20467 1.46412 1.47314 1.55665 1.60077 2.02808 2.48606 2.91431 3.30152 3.40987 3.53459 3.68597 3.71434 3.88754 3.91561 3.97027 4.00810 4.15508 4.18012 4.27112 4.28922 4.32582 4.42288 4.48184 4.63783 4.64814 4.73363 4.74755 4.76795 4.80628 4.88678 4.95007 5.00583 5.05845 5.09852 5.16326 5.18800 5.21575 5.34005 5.46088 5.53006 5.55143 5.58038 5.62796 5.65866 5.66234 5.74570 5.85503 6.13071 6.39085 6.54969 7.09812 7.12733 7.77874 8.46010 9.23807 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.003421 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.056766 B = 8182.193429 C = 9065.008993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.162 4.162 3 C -0.022 4.022 4 H 0.134 0.866 5 C 0.534 3.466 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.095 3.905 9 C -0.108 4.108 10 H 0.101 0.899 11 C 0.153 3.847 12 N -0.617 5.617 13 C -0.238 4.238 14 H 0.074 0.926 15 C -0.060 4.060 16 N -0.939 5.939 17 Si 0.977 3.023 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.143 3.857 22 C -0.077 4.077 23 C -0.115 4.115 24 C 0.121 3.879 25 C -0.077 4.077 26 C -0.108 4.108 27 C -0.137 4.137 28 C -0.123 4.123 29 C -0.124 4.124 30 C -0.116 4.116 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.092 0.908 37 H -0.016 1.016 38 H 0.248 0.752 39 H -0.006 1.006 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.129 0.871 48 H 0.147 0.853 49 H 0.153 0.847 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 15.809 -10.409 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 C -0.042 4.042 4 H 0.152 0.848 5 C 0.323 3.677 6 O -0.457 6.457 7 N -0.339 5.339 8 C -0.027 4.027 9 C -0.128 4.128 10 H 0.120 0.880 11 C 0.028 3.972 12 N -0.341 5.341 13 C -0.367 4.367 14 H 0.092 0.908 15 C -0.253 4.253 16 N -0.589 5.589 17 Si 0.805 3.195 18 H -0.209 1.209 19 H -0.219 1.219 20 H -0.204 1.204 21 C 0.017 3.983 22 C -0.079 4.079 23 C -0.172 4.172 24 C -0.002 4.002 25 C -0.077 4.077 26 C -0.127 4.127 27 C -0.155 4.155 28 C -0.141 4.141 29 C -0.142 4.142 30 C -0.134 4.134 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.002 0.998 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.147 0.853 48 H 0.164 0.836 49 H 0.170 0.830 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.223 15.662 -10.531 19.003 hybrid contribution 0.274 -1.852 0.568 1.957 sum 2.497 13.809 -9.962 17.210 Atomic orbital electron populations 1.24084 0.94723 1.03780 0.96124 1.22348 0.96428 0.95716 1.03542 1.19372 0.96348 0.99033 0.89475 0.84808 1.20466 0.88027 0.75351 0.83847 1.90671 1.16449 1.52000 1.86543 1.48502 1.09467 1.70974 1.04915 1.22710 0.80794 1.01272 0.97916 1.23028 0.96787 0.96908 0.96065 0.88044 1.21728 0.96965 0.87788 0.90756 1.44786 1.16122 1.14598 1.58546 1.19381 1.01305 0.91169 1.24820 0.90830 1.25501 0.96557 1.02193 1.01023 1.69847 1.07826 1.37469 1.43735 0.85108 0.77333 0.79514 0.77524 1.20935 1.21874 1.20352 1.21507 0.89931 0.89807 0.97043 1.22085 0.95000 0.94270 0.96535 1.21575 1.02371 1.00434 0.92820 1.22068 0.95614 1.00253 0.82223 1.19374 0.96628 0.96461 0.95274 1.20928 0.95995 0.98617 0.97111 1.21334 0.99758 0.99836 0.94535 1.21478 0.98636 0.94359 0.99641 1.21469 0.95424 0.99604 0.97690 1.21309 1.00547 0.97279 0.94254 0.88054 0.84945 0.89799 0.88325 0.88790 0.89003 0.99799 0.94177 0.98856 0.93952 0.89983 0.93342 0.91551 0.92637 0.89059 0.89173 0.85306 0.83571 0.82953 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 12.03 67.79 0.82 -2.75 16 2 C -0.16 -4.57 7.17 25.65 0.18 -4.39 16 3 C -0.02 -0.57 2.23 -13.03 -0.03 -0.60 16 4 H 0.13 2.64 7.52 -2.38 -0.02 2.62 16 5 C 0.53 17.81 7.09 87.66 0.62 18.43 16 6 O -0.58 -23.27 15.32 -3.03 -0.05 -23.32 16 7 N -0.61 -19.00 3.31 -814.56 -2.70 -21.70 16 8 C 0.10 2.63 6.06 86.60 0.53 3.16 16 9 C -0.11 -3.67 3.68 -9.54 -0.04 -3.70 16 10 H 0.10 3.16 7.88 -2.39 -0.02 3.14 16 11 C 0.15 7.15 5.71 86.51 0.49 7.65 16 12 N -0.62 -31.78 3.39 -695.33 -2.36 -34.14 16 13 C -0.24 -13.38 10.34 84.03 0.87 -12.51 16 14 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 15 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 16 N -0.94 -53.81 10.08 21.65 0.22 -53.59 16 17 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 C 0.14 6.18 6.38 86.51 0.55 6.73 16 22 C -0.08 -2.53 1.09 -51.02 -0.06 -2.59 16 23 C -0.11 -3.03 8.49 71.98 0.61 -2.42 16 24 C 0.12 3.75 5.95 86.51 0.51 4.26 16 25 C -0.08 -2.09 4.39 -19.87 -0.09 -2.18 16 26 C -0.11 -3.29 8.03 22.27 0.18 -3.11 16 27 C -0.14 -3.45 10.05 22.27 0.22 -3.22 16 28 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 29 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 30 C -0.12 -2.47 9.67 22.27 0.22 -2.25 16 31 H 0.10 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.13 2.23 7.83 -2.91 -0.02 2.21 16 33 H 0.08 2.87 8.05 -2.91 -0.02 2.85 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.64 3.23 -2.39 -0.01 2.63 16 36 H 0.09 4.89 5.45 -2.39 -0.01 4.87 16 37 H -0.02 -0.81 7.41 -2.39 -0.02 -0.82 16 38 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 39 H -0.01 -0.30 7.40 -2.39 -0.02 -0.31 16 40 H 0.04 1.78 7.85 -2.39 -0.02 1.76 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.95 7.29 -2.39 -0.02 1.94 16 45 H 0.09 2.30 7.87 -2.39 -0.02 2.28 16 46 H 0.09 3.14 7.97 -2.91 -0.02 3.12 16 47 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 48 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 49 H 0.15 1.81 8.06 -2.90 -0.02 1.78 16 50 H 0.15 2.22 7.95 -2.91 -0.02 2.19 16 Total: -1.00 -72.13 391.56 4.57 -67.56 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.92 Total: 24.52 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.51 Total: -6.72 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.83 Total: -109.43 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.13 4.57 -67.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092294271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.296 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds