Wall clock time and date at job start Tue Mar 31 2020 23:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.52997 * 109.47053 * 66.04702 * 3 2 1 5 5 N 1.46496 * 109.47152 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00234 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99835 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.59912 * 299.66797 * 8 6 5 10 10 C 1.53350 * 109.60136 * 179.18504 * 8 6 5 11 11 C 1.53087 * 108.41071 * 172.69386 * 10 8 6 12 12 C 1.50180 * 109.88812 * 48.91396 * 11 10 8 13 13 O 1.21279 * 118.24106 * 162.39613 * 12 11 10 14 14 N 1.33351 * 123.50979 * 342.41075 * 12 11 10 15 15 C 1.45750 * 124.10503 * 2.20898 * 14 12 11 16 16 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 17 17 C 1.50694 * 109.47330 * 293.95439 * 16 2 1 18 18 O 1.21299 * 120.00004 * 0.02562 * 17 16 2 19 19 N 1.34777 * 120.00346 * 179.97438 * 17 16 2 20 20 C 1.37099 * 120.00249 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99699 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99694 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00376 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46967 * 89.99686 * 24 22 20 26 26 H 1.48503 * 109.46963 * 209.99757 * 24 22 20 27 27 H 1.48498 * 109.46843 * 329.99574 * 24 22 20 28 28 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 29 29 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 30 30 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 31 31 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 32 32 H 1.09005 * 109.46676 * 306.04728 * 3 2 1 33 33 H 1.09002 * 109.47313 * 299.99660 * 4 3 2 34 34 H 1.08994 * 109.47205 * 59.99990 * 4 3 2 35 35 H 0.97006 * 119.99778 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.46666 * 60.00747 * 9 8 6 37 37 H 1.08998 * 109.47071 * 180.02562 * 9 8 6 38 38 H 1.08999 * 109.47117 * 300.00384 * 9 8 6 39 39 H 1.09004 * 109.67177 * 292.43632 * 10 8 6 40 40 H 1.08992 * 109.67541 * 52.97334 * 10 8 6 41 41 H 1.08994 * 109.40206 * 288.78406 * 11 10 8 42 42 H 1.09001 * 109.33142 * 168.99680 * 11 10 8 43 43 H 0.96997 * 117.94790 * 182.22509 * 14 12 11 44 44 H 1.08999 * 109.30049 * 220.62777 * 15 14 12 45 45 H 1.08999 * 109.13422 * 101.14832 * 15 14 12 46 46 H 1.09009 * 109.47296 * 53.95365 * 16 2 1 47 47 H 1.09002 * 109.47055 * 173.95064 * 16 2 1 48 48 H 0.96996 * 119.99759 * 0.02562 * 19 17 16 49 49 H 0.96992 * 119.99667 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4249 1.3185 6 6 1.9567 4.2237 2.3854 7 8 1.3410 3.8105 3.3451 8 6 2.4968 5.6305 2.3854 9 6 4.0197 5.5957 2.2411 10 6 2.1169 6.3275 3.6975 11 6 2.8289 7.6817 3.7494 12 6 2.6209 8.4182 2.4573 13 8 2.8289 9.6129 2.4378 14 7 2.2194 7.8290 1.3304 15 6 1.8890 6.4136 1.2211 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0046 -2.5831 -0.0034 19 7 2.0179 -3.1180 -1.9033 20 6 1.6922 -4.4412 -1.7531 21 1 1.1300 -4.7643 -0.8895 22 6 2.0856 -5.3666 -2.7121 23 7 1.7729 -6.6349 -2.5685 24 14 3.0587 -4.8079 -4.2055 25 1 4.5111 -4.8752 -3.9034 26 1 2.7509 -5.6940 -5.3567 27 1 2.6876 -3.4103 -4.5436 28 1 -0.3634 -1.0251 0.0708 29 1 -0.3633 0.5740 0.8525 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8310 33 1 0.5473 2.0845 1.4265 34 1 2.0659 1.5016 2.1491 35 1 2.6493 3.7555 0.5507 36 1 4.2847 5.1060 1.3040 37 1 4.4081 6.6141 2.2418 38 1 4.4511 5.0420 3.0751 39 1 1.0379 6.4783 3.7338 40 1 2.4310 5.7152 4.5426 41 1 3.8956 7.5240 3.9087 42 1 2.4234 8.2713 4.5716 43 1 2.1427 8.3766 0.5335 44 1 2.2804 6.0239 0.2814 45 1 0.8053 6.2976 1.2357 46 1 1.5611 -0.3872 -2.0629 47 1 3.0797 -0.6611 -1.1757 48 1 2.5233 -2.8278 -2.6787 49 1 2.0478 -7.2809 -3.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:56 Heat of formation + Delta-G solvation = -97.582591 kcal Electronic energy + Delta-G solvation = -29393.198164 eV Core-core repulsion = 25162.464063 eV Total energy + Delta-G solvation = -4230.734101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54910 -39.86879 -38.88463 -37.32375 -36.83501 -34.93119 -33.93579 -33.91155 -31.73289 -31.59219 -29.45753 -27.90039 -27.63289 -25.56759 -25.23682 -24.06601 -22.94048 -21.39110 -21.08081 -19.40801 -18.97403 -18.31812 -18.02095 -17.11904 -16.72432 -16.42235 -16.15506 -15.96002 -15.80504 -15.38432 -15.18003 -14.99992 -14.72420 -14.52676 -14.11117 -13.98181 -13.87640 -13.58454 -13.17366 -13.12716 -12.99837 -12.79845 -12.48206 -12.41514 -12.22029 -12.10401 -11.93640 -11.65812 -11.59751 -11.45591 -11.41755 -11.20025 -11.09130 -10.63909 -10.25789 -10.18074 -10.01170 -9.67725 -9.58286 -9.40181 -8.66742 -8.22500 -8.07183 -6.34439 -3.86061 2.12550 2.16937 2.56941 2.76834 2.98009 3.02944 3.11599 3.68364 3.76780 3.82392 4.00458 4.04432 4.07044 4.09134 4.42963 4.58274 4.64436 4.70359 4.71352 4.77892 4.89602 4.94155 5.02717 5.11156 5.16204 5.22608 5.29709 5.37948 5.40619 5.51582 5.53295 5.62050 5.67884 5.71453 5.74466 5.83470 5.89780 6.03441 6.20284 6.44881 6.73571 6.98551 7.06776 7.16003 7.54434 7.68497 7.78844 8.10930 8.56292 8.91761 9.38547 9.79083 10.78629 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.001686 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.196116 B =16600.865861 C =17074.126739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.726 5.726 6 C 0.527 3.473 7 O -0.525 6.525 8 C -0.095 4.095 9 C -0.145 4.145 10 C -0.100 4.100 11 C -0.137 4.137 12 C 0.520 3.480 13 O -0.556 6.556 14 N -0.717 5.717 15 C 0.123 3.877 16 C 0.045 3.955 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.403 0.597 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.050 0.950 47 H 0.090 0.910 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 28.639 3.810 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.004 4.004 5 N -0.378 5.378 6 C 0.311 3.689 7 O -0.400 6.400 8 C -0.099 4.099 9 C -0.203 4.203 10 C -0.138 4.138 11 C -0.177 4.177 12 C 0.308 3.692 13 O -0.435 6.435 14 N -0.369 5.369 15 C -0.002 4.002 16 C -0.087 4.087 17 C 0.237 3.763 18 O -0.439 6.439 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.239 0.761 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.202 0.798 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.818 28.071 5.724 28.902 hybrid contribution 0.741 0.806 -2.918 3.117 sum 4.559 28.877 2.806 29.369 Atomic orbital electron populations 1.22663 0.86247 1.05143 0.99091 1.61440 1.09113 1.10450 1.42884 1.22252 1.00753 0.89796 0.95677 1.21394 0.99764 0.80446 0.98763 1.45959 1.57838 1.14534 1.19448 1.20061 0.79719 0.86434 0.82642 1.90760 1.40021 1.75305 1.33943 1.21126 0.98070 0.92871 0.97847 1.21951 0.91649 1.03382 1.03286 1.21549 1.01563 0.94492 0.96222 1.21750 1.03855 0.96623 0.95454 1.20241 0.75656 0.87618 0.85714 1.90783 1.51544 1.15524 1.85628 1.45372 1.68757 1.10239 1.12572 1.21374 1.00432 0.80559 0.97856 1.21907 1.00777 0.94135 0.91865 1.19595 0.85264 0.86377 0.85050 1.90538 1.42561 1.79885 1.30953 1.42203 1.51029 1.08389 1.21375 1.19429 1.33904 0.80272 1.09766 0.86233 1.25044 0.97877 0.95138 0.98102 1.69623 1.45559 1.01144 1.35708 0.86671 0.80911 0.78653 0.83119 1.19598 1.20190 1.19590 0.88205 0.91715 0.96469 0.90247 0.94527 0.90898 0.89989 0.76753 0.91501 0.91138 0.90964 0.90238 0.89067 0.87698 0.87588 0.76147 0.89795 0.90767 0.93227 0.89187 0.79755 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.01 60.07 0.54 0.78 16 2 N -0.51 -7.38 4.50 -244.36 -1.10 -8.48 16 3 C 0.04 0.42 5.07 -3.82 -0.02 0.40 16 4 C 0.12 1.14 5.60 -4.05 -0.02 1.12 16 5 N -0.73 -4.79 5.36 -60.30 -0.32 -5.11 16 6 C 0.53 4.25 6.47 -10.99 -0.07 4.18 16 7 O -0.53 -6.58 15.89 5.56 0.09 -6.49 16 8 C -0.10 -0.49 0.62 -155.52 -0.10 -0.58 16 9 C -0.15 -0.56 7.77 37.16 0.29 -0.28 16 10 C -0.10 -0.58 4.36 -26.51 -0.12 -0.70 16 11 C -0.14 -0.75 5.39 -28.09 -0.15 -0.90 16 12 C 0.52 3.99 6.91 -11.87 -0.08 3.91 16 13 O -0.56 -6.69 17.78 5.56 0.10 -6.59 16 14 N -0.72 -3.63 5.32 -61.39 -0.33 -3.96 16 15 C 0.12 0.46 5.68 -4.49 -0.03 0.43 16 16 C 0.04 0.68 5.45 -4.98 -0.03 0.66 16 17 C 0.45 9.79 7.51 -10.99 -0.08 9.71 16 18 O -0.56 -14.36 13.89 5.54 0.08 -14.28 16 19 N -0.59 -13.55 5.09 -10.96 -0.06 -13.60 16 20 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 23 N -0.88 -25.31 13.96 55.50 0.77 -24.53 16 24 Si 0.88 18.82 27.74 -169.99 -4.71 14.10 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.21 6.52 56.52 0.37 -4.85 16 28 H 0.10 1.84 5.88 -51.93 -0.31 1.53 16 29 H 0.06 0.83 6.30 -51.93 -0.33 0.50 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 32 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 33 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 1.43 7.54 -40.82 -0.31 1.12 16 36 H 0.07 0.18 7.59 -51.93 -0.39 -0.22 16 37 H 0.07 0.28 5.80 -51.93 -0.30 -0.03 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.09 0.58 7.89 -51.93 -0.41 0.17 16 41 H 0.10 0.45 6.96 -51.93 -0.36 0.09 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.40 1.70 8.80 -40.82 -0.36 1.34 16 44 H 0.08 0.12 7.82 -51.93 -0.41 -0.28 16 45 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 46 H 0.05 0.66 8.12 -51.92 -0.42 0.24 16 47 H 0.09 1.17 7.93 -51.93 -0.41 0.75 16 48 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 49 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -36.79 389.18 -7.23 -44.02 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.50 Total: 7.91 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.11 Total: 11.16 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -1.03 Total: -55.68 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: 0.26 Total: -27.37 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.79 -7.23 -44.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.567 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds