Wall clock time and date at job start Tue Mar 31 2020 23:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.52997 * 109.47053 * 66.04702 * 3 2 1 5 5 N 1.46496 * 109.47152 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00234 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99835 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.59912 * 299.66797 * 8 6 5 10 10 C 1.53350 * 109.60136 * 179.18504 * 8 6 5 11 11 C 1.53087 * 108.41071 * 172.69386 * 10 8 6 12 12 C 1.50180 * 109.88812 * 48.91396 * 11 10 8 13 13 O 1.21279 * 118.24106 * 162.39613 * 12 11 10 14 14 N 1.33351 * 123.50979 * 342.41075 * 12 11 10 15 15 C 1.45750 * 124.10503 * 2.20898 * 14 12 11 16 16 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 17 17 C 1.50694 * 109.47330 * 293.95439 * 16 2 1 18 18 O 1.21299 * 120.00004 * 0.02562 * 17 16 2 19 19 N 1.34777 * 120.00346 * 179.97438 * 17 16 2 20 20 C 1.37099 * 120.00249 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99699 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99694 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00376 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46967 * 89.99686 * 24 22 20 26 26 H 1.48503 * 109.46963 * 209.99757 * 24 22 20 27 27 H 1.48498 * 109.46843 * 329.99574 * 24 22 20 28 28 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 29 29 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 30 30 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 31 31 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 32 32 H 1.09005 * 109.46676 * 306.04728 * 3 2 1 33 33 H 1.09002 * 109.47313 * 299.99660 * 4 3 2 34 34 H 1.08994 * 109.47205 * 59.99990 * 4 3 2 35 35 H 0.97006 * 119.99778 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.46666 * 60.00747 * 9 8 6 37 37 H 1.08998 * 109.47071 * 180.02562 * 9 8 6 38 38 H 1.08999 * 109.47117 * 300.00384 * 9 8 6 39 39 H 1.09004 * 109.67177 * 292.43632 * 10 8 6 40 40 H 1.08992 * 109.67541 * 52.97334 * 10 8 6 41 41 H 1.08994 * 109.40206 * 288.78406 * 11 10 8 42 42 H 1.09001 * 109.33142 * 168.99680 * 11 10 8 43 43 H 0.96997 * 117.94790 * 182.22509 * 14 12 11 44 44 H 1.08999 * 109.30049 * 220.62777 * 15 14 12 45 45 H 1.08999 * 109.13422 * 101.14832 * 15 14 12 46 46 H 1.09009 * 109.47296 * 53.95365 * 16 2 1 47 47 H 1.09002 * 109.47055 * 173.95064 * 16 2 1 48 48 H 0.96996 * 119.99759 * 0.02562 * 19 17 16 49 49 H 0.96992 * 119.99667 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4249 1.3185 6 6 1.9567 4.2237 2.3854 7 8 1.3410 3.8105 3.3451 8 6 2.4968 5.6305 2.3854 9 6 4.0197 5.5957 2.2411 10 6 2.1169 6.3275 3.6975 11 6 2.8289 7.6817 3.7494 12 6 2.6209 8.4182 2.4573 13 8 2.8289 9.6129 2.4378 14 7 2.2194 7.8290 1.3304 15 6 1.8890 6.4136 1.2211 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0046 -2.5831 -0.0034 19 7 2.0179 -3.1180 -1.9033 20 6 1.6922 -4.4412 -1.7531 21 1 1.1300 -4.7643 -0.8895 22 6 2.0856 -5.3666 -2.7121 23 7 1.7729 -6.6349 -2.5685 24 14 3.0587 -4.8079 -4.2055 25 1 4.5111 -4.8752 -3.9034 26 1 2.7509 -5.6940 -5.3567 27 1 2.6876 -3.4103 -4.5436 28 1 -0.3634 -1.0251 0.0708 29 1 -0.3633 0.5740 0.8525 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8310 33 1 0.5473 2.0845 1.4265 34 1 2.0659 1.5016 2.1491 35 1 2.6493 3.7555 0.5507 36 1 4.2847 5.1060 1.3040 37 1 4.4081 6.6141 2.2418 38 1 4.4511 5.0420 3.0751 39 1 1.0379 6.4783 3.7338 40 1 2.4310 5.7152 4.5426 41 1 3.8956 7.5240 3.9087 42 1 2.4234 8.2713 4.5716 43 1 2.1427 8.3766 0.5335 44 1 2.2804 6.0239 0.2814 45 1 0.8053 6.2976 1.2357 46 1 1.5611 -0.3872 -2.0629 47 1 3.0797 -0.6611 -1.1757 48 1 2.5233 -2.8278 -2.6787 49 1 2.0478 -7.2809 -3.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:55 Heat of formation + Delta-G solvation = -130.885218 kcal Electronic energy + Delta-G solvation = -29394.642274 eV Core-core repulsion = 25162.464063 eV Total energy + Delta-G solvation = -4232.178211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08518 -40.61911 -40.37032 -38.31302 -37.65280 -36.05056 -35.55232 -34.39933 -33.72800 -32.17786 -30.39296 -29.07050 -27.98962 -26.99504 -25.73147 -25.33599 -23.65589 -22.27741 -21.71882 -21.21574 -20.15239 -19.53140 -18.50824 -17.84633 -17.59091 -17.32216 -17.04961 -16.78244 -16.72833 -16.53128 -16.29571 -15.72950 -15.57016 -15.52948 -15.23792 -14.91461 -14.85429 -14.62475 -14.45881 -14.21487 -14.03955 -13.68207 -13.48639 -13.13027 -13.08063 -12.98008 -12.90652 -12.59730 -12.52931 -12.51218 -12.38304 -12.12502 -12.04715 -11.95611 -11.84215 -11.44591 -10.89085 -10.84655 -10.34789 -10.20703 -10.16138 -10.08960 -9.20183 -8.38635 -5.99511 1.31660 1.38299 1.46895 1.52902 1.57977 1.93164 2.00364 2.25671 2.29550 2.76824 3.17432 3.29043 3.37225 3.50885 3.61135 3.65311 3.88245 4.02952 4.12320 4.15217 4.15942 4.34634 4.39400 4.46988 4.48820 4.51404 4.59300 4.65080 4.67612 4.69800 4.80016 4.89804 4.92006 4.96572 5.02638 5.11105 5.25640 5.26700 5.37460 5.55797 5.79738 5.90574 6.01764 6.19515 6.24444 6.52043 6.63058 6.92247 7.16433 7.21856 7.43697 8.02315 8.79179 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.001686 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.196116 B =16600.865861 C =17074.126739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.052 3.948 4 C 0.127 3.873 5 N -0.707 5.707 6 C 0.529 3.471 7 O -0.576 6.576 8 C -0.087 4.087 9 C -0.144 4.144 10 C -0.099 4.099 11 C -0.130 4.130 12 C 0.518 3.482 13 O -0.606 6.606 14 N -0.705 5.705 15 C 0.122 3.878 16 C 0.058 3.942 17 C 0.448 3.552 18 O -0.608 6.608 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.228 1.228 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.409 0.591 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.390 0.610 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 31.704 0.535 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.075 4.075 4 C 0.002 3.998 5 N -0.360 5.360 6 C 0.314 3.686 7 O -0.454 6.454 8 C -0.090 4.090 9 C -0.201 4.201 10 C -0.137 4.137 11 C -0.170 4.170 12 C 0.307 3.693 13 O -0.489 6.489 14 N -0.355 5.355 15 C -0.002 4.002 16 C -0.073 4.073 17 C 0.236 3.764 18 O -0.492 6.492 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.246 0.754 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.144 0.856 48 H 0.226 0.774 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.223 31.163 2.403 31.869 hybrid contribution -0.112 -0.191 -1.735 1.750 sum 6.111 30.972 0.668 31.577 Atomic orbital electron populations 1.22475 0.87035 1.02343 1.00679 1.61293 1.08789 1.13588 1.43193 1.22271 1.02091 0.87085 0.96098 1.21128 0.98787 0.81600 0.98248 1.45723 1.57281 1.13180 1.19820 1.20525 0.78716 0.87348 0.81982 1.90751 1.42343 1.76427 1.35913 1.21049 0.99068 0.90908 0.98016 1.21978 0.90125 1.03795 1.04234 1.21493 1.00908 0.94592 0.96669 1.21715 1.04699 0.95973 0.94585 1.20537 0.75093 0.87025 0.86691 1.90764 1.54100 1.17566 1.86421 1.45310 1.67241 1.10886 1.12111 1.21536 1.00610 0.79414 0.98627 1.21837 1.03091 0.88833 0.93537 1.21023 0.82889 0.89096 0.83370 1.90535 1.44168 1.81529 1.32946 1.42024 1.51957 1.06700 1.22776 1.18985 1.34770 0.83247 1.08631 0.92916 1.26154 0.98731 0.94645 1.02084 1.69819 1.47331 1.03092 1.37557 0.85341 0.78953 0.80238 0.76804 1.18132 1.20348 1.15074 0.93084 0.90750 0.94306 0.87865 0.91494 0.92378 0.92782 0.74382 0.89352 0.90825 0.91555 0.91356 0.89935 0.86249 0.87562 0.75410 0.86241 0.90744 0.89848 0.85569 0.77444 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.01 127.69 1.15 1.78 16 2 N -0.54 -14.13 4.50 -927.02 -4.17 -18.30 16 3 C 0.05 0.75 5.07 86.30 0.44 1.19 16 4 C 0.13 2.12 5.60 86.38 0.48 2.60 16 5 N -0.71 -6.94 5.36 -463.08 -2.48 -9.42 16 6 C 0.53 7.51 6.47 87.66 0.57 8.07 16 7 O -0.58 -14.34 15.89 -3.02 -0.05 -14.39 16 8 C -0.09 -0.68 0.62 -52.84 -0.03 -0.71 16 9 C -0.14 -0.65 7.77 71.98 0.56 -0.09 16 10 C -0.10 -1.06 4.36 30.74 0.13 -0.93 16 11 C -0.13 -1.29 5.39 29.71 0.16 -1.13 16 12 C 0.52 7.28 6.91 87.72 0.61 7.89 16 13 O -0.61 -14.32 17.78 -3.03 -0.05 -14.37 16 14 N -0.70 -5.42 5.32 -467.33 -2.49 -7.91 16 15 C 0.12 0.49 5.68 86.49 0.49 0.98 16 16 C 0.06 1.54 5.45 85.56 0.47 2.01 16 17 C 0.45 19.22 7.51 87.65 0.66 19.88 16 18 O -0.61 -32.73 13.89 -3.09 -0.04 -32.78 16 19 N -0.59 -26.74 5.09 -306.98 -1.56 -28.31 16 20 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 23 N -0.94 -56.04 13.96 21.66 0.30 -55.73 16 24 Si 0.97 37.42 27.74 68.60 1.90 39.32 16 25 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.18 6.52 99.48 0.65 -6.53 16 28 H 0.05 1.94 5.88 -2.39 -0.01 1.92 16 29 H 0.07 1.87 6.30 -2.38 -0.02 1.86 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.06 7.93 -2.39 -0.02 1.04 16 32 H 0.07 0.64 8.12 -2.38 -0.02 0.62 16 33 H 0.06 1.16 6.47 -2.39 -0.02 1.15 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.42 0.78 7.54 -92.70 -0.70 0.09 16 36 H 0.09 0.04 7.59 -2.39 -0.02 0.02 16 37 H 0.07 0.34 5.80 -2.39 -0.01 0.33 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.88 8.13 -2.38 -0.02 0.86 16 40 H 0.08 1.05 7.89 -2.39 -0.02 1.03 16 41 H 0.12 0.84 6.96 -2.39 -0.02 0.82 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.41 2.42 8.80 -92.71 -0.82 1.60 16 44 H 0.12 -0.29 7.82 -2.39 -0.02 -0.31 16 45 H 0.07 0.38 8.11 -2.39 -0.02 0.36 16 46 H 0.08 1.74 8.12 -2.38 -0.02 1.72 16 47 H 0.13 2.52 7.93 -2.39 -0.02 2.51 16 48 H 0.39 14.22 5.76 -92.71 -0.53 13.69 16 49 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -90.51 389.18 -2.74 -93.25 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -1.10 Total: 25.54 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 7.00 Total: 23.09 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -10.40 Total: -119.67 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -0.14 Total: -61.54 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.90 Total: 39.32 kcal Total: -90.51 -2.74 -93.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.631 kcal (2) G-P(sol) polarization free energy of solvation -90.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds