Wall clock time and date at job start Tue Mar 31 2020 22:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99815 * 2 1 4 4 H 1.08998 * 109.47286 * 0.02562 * 3 2 1 5 5 C 1.50705 * 109.46870 * 120.00504 * 3 2 1 6 6 O 1.21281 * 119.99872 * 120.00264 * 5 3 2 7 7 N 1.34771 * 119.99903 * 300.00179 * 5 3 2 8 8 C 1.46500 * 120.00054 * 180.02562 * 7 5 3 9 9 H 1.09002 * 115.56639 * 350.69811 * 8 7 5 10 10 C 1.53029 * 117.50506 * 136.41356 * 8 7 5 11 11 C 1.52816 * 117.50333 * 205.00146 * 8 7 5 12 12 C 1.53184 * 117.71336 * 0.13015 * 11 8 7 13 13 C 1.53352 * 108.77090 * 201.11992 * 12 11 8 14 14 N 1.46837 * 108.81528 * 308.69443 * 13 12 11 15 15 C 1.36937 * 120.38408 * 236.91862 * 14 13 12 16 16 H 1.08001 * 119.99954 * 151.80197 * 15 14 13 17 17 C 1.38813 * 120.00203 * 331.80020 * 15 14 13 18 18 N 1.31619 * 120.00025 * 159.30478 * 17 15 14 19 19 Si 1.86806 * 119.99740 * 339.31404 * 17 15 14 20 20 H 1.48498 * 109.47024 * 94.25420 * 19 17 15 21 21 H 1.48496 * 109.46925 * 214.25417 * 19 17 15 22 22 H 1.48499 * 109.47057 * 334.25556 * 19 17 15 23 23 C 1.46850 * 119.23444 * 56.89826 * 14 13 12 24 24 C 1.53183 * 117.71716 * 144.89521 * 11 8 7 25 25 C 1.50698 * 109.47181 * 240.00323 * 3 2 1 26 26 C 1.38228 * 120.00171 * 299.72879 * 25 3 2 27 27 C 1.38239 * 120.00068 * 179.81097 * 26 25 3 28 28 C 1.38229 * 119.99838 * 0.42005 * 27 26 25 29 29 C 1.38236 * 120.00289 * 359.80898 * 28 27 26 30 30 C 1.38231 * 119.99818 * 0.02562 * 29 28 27 31 31 H 1.08000 * 120.00025 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99715 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.00099 * 180.02562 * 2 1 3 34 34 H 0.96998 * 120.00101 * 359.97438 * 7 5 3 35 35 H 1.08998 * 117.50589 * 0.02562 * 10 8 7 36 36 H 1.09004 * 117.50246 * 214.94866 * 10 8 7 37 37 H 1.08995 * 109.59414 * 320.91018 * 12 11 8 38 38 H 1.09008 * 109.58624 * 81.33711 * 12 11 8 39 39 H 1.08996 * 109.58053 * 188.89696 * 13 12 11 40 40 H 1.09000 * 109.57779 * 68.49213 * 13 12 11 41 41 H 0.97001 * 119.99824 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.57999 * 183.29585 * 23 14 13 43 43 H 1.08997 * 109.58093 * 62.89422 * 23 14 13 44 44 H 1.08999 * 109.59117 * 278.65882 * 24 11 8 45 45 H 1.08998 * 109.58822 * 39.09404 * 24 11 8 46 46 H 1.07999 * 120.00070 * 359.97438 * 26 25 3 47 47 H 1.08007 * 120.00137 * 180.20643 * 27 26 25 48 48 H 1.08000 * 120.00041 * 179.79324 * 28 27 26 49 49 H 1.07994 * 120.00472 * 179.97438 * 29 28 27 50 50 H 1.08003 * 120.00160 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9300 1.3849 1.2305 6 8 4.1326 1.4957 1.1191 7 7 2.3685 1.3330 2.4545 8 6 3.2107 1.4111 3.6507 9 1 4.2847 1.3509 3.4745 10 6 2.7314 2.3066 4.7953 11 6 2.6705 0.7858 4.9362 12 6 1.2914 0.1213 4.8803 13 6 0.7224 0.0451 6.3023 14 7 1.7263 -0.5669 7.1819 15 6 1.4238 -1.6933 7.8996 16 1 2.2050 -2.3896 8.1665 17 6 0.1130 -1.9401 8.2842 18 7 -0.2617 -3.1621 8.5983 19 14 -1.1191 -0.5378 8.3557 20 1 -1.8655 -0.4689 7.0738 21 1 -2.0713 -0.7719 9.4709 22 1 -0.4000 0.7421 8.5792 23 6 3.0585 0.0425 7.2828 24 6 3.6750 0.1184 5.8806 25 6 2.9298 1.3850 -1.2305 26 6 3.9127 0.4374 -1.4465 27 6 4.7048 0.5085 -2.5772 28 6 4.5197 1.5322 -3.4875 29 6 3.5399 2.4826 -3.2691 30 6 2.7456 2.4095 -2.1402 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 1.4066 1.2447 2.5436 35 1 1.7893 2.8373 4.6585 36 1 3.4901 2.8355 5.3721 37 1 0.6259 0.7128 4.2516 38 1 1.3867 -0.8843 4.4705 39 1 -0.1821 -0.5630 6.3017 40 1 0.4897 1.0492 6.6569 41 1 -1.1777 -3.3346 8.8667 42 1 3.6913 -0.5674 7.9275 43 1 2.9705 1.0464 7.6980 44 1 3.8986 -0.8874 5.5248 45 1 4.5911 0.7080 5.9157 46 1 4.0601 -0.3600 -0.7332 47 1 5.4706 -0.2339 -2.7477 48 1 5.1407 1.5896 -4.3692 49 1 3.3956 3.2826 -3.9800 50 1 1.9804 3.1523 -1.9693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265335621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:41 Heat of formation + Delta-G solvation = 41.272575 kcal Electronic energy + Delta-G solvation = -29371.046593 eV Core-core repulsion = 25557.182967 eV Total energy + Delta-G solvation = -3813.863626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.52973 -40.41340 -39.35569 -37.29663 -36.15077 -34.47735 -33.42861 -32.11437 -32.04940 -31.74102 -30.31231 -28.14740 -26.02607 -24.57530 -23.76322 -23.57669 -22.97135 -22.22805 -21.59815 -20.63577 -19.92482 -18.60293 -18.23519 -17.87855 -17.28722 -17.03584 -16.31403 -16.18361 -15.94253 -15.65058 -15.43942 -15.37972 -15.30965 -14.80819 -14.45683 -14.34233 -14.26829 -14.22834 -13.94511 -13.63441 -13.54819 -13.44766 -13.26108 -12.99223 -12.62925 -12.40718 -12.32867 -12.26463 -12.10311 -11.99934 -11.78439 -11.60983 -11.50086 -11.31488 -11.23252 -10.82190 -10.63335 -10.27909 -9.77431 -9.66843 -9.61906 -8.85196 -8.15409 -5.47093 0.40478 0.54458 1.22895 1.29840 1.42996 1.52554 1.57818 2.08631 2.42799 2.90235 2.93932 3.07956 3.36757 3.65293 3.71623 3.72937 3.81523 3.91054 3.97322 3.99535 4.04060 4.18682 4.18891 4.29789 4.37986 4.50406 4.52170 4.60806 4.65180 4.69770 4.77395 4.80968 4.85908 4.93559 4.96044 4.97852 5.00976 5.10385 5.13114 5.17227 5.21543 5.30988 5.49659 5.51954 5.57105 5.61944 5.64257 5.65355 5.73909 5.89216 6.13270 6.14307 6.49705 6.95218 7.18989 7.65373 8.05320 9.04770 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002501 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.814625 B =11193.173564 C =11721.152964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.168 4.168 3 C -0.029 4.029 4 H 0.132 0.868 5 C 0.523 3.477 6 O -0.569 6.569 7 N -0.686 5.686 8 C 0.084 3.916 9 H 0.122 0.878 10 C -0.163 4.163 11 C -0.120 4.120 12 C -0.086 4.086 13 C 0.126 3.874 14 N -0.619 5.619 15 C -0.249 4.249 16 H 0.046 0.954 17 C -0.038 4.038 18 N -0.959 5.959 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.314 1.314 22 H -0.259 1.259 23 C 0.148 3.852 24 C -0.089 4.089 25 C -0.077 4.077 26 C -0.104 4.104 27 C -0.137 4.137 28 C -0.126 4.126 29 C -0.128 4.128 30 C -0.120 4.120 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.052 0.948 43 H 0.040 0.960 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.130 0.870 48 H 0.142 0.858 49 H 0.147 0.853 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 15.149 -24.318 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C -0.050 4.050 4 H 0.150 0.850 5 C 0.311 3.689 6 O -0.448 6.448 7 N -0.336 5.336 8 C -0.022 4.022 9 H 0.140 0.860 10 C -0.202 4.202 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.001 3.999 14 N -0.343 5.343 15 C -0.379 4.379 16 H 0.064 0.936 17 C -0.233 4.233 18 N -0.605 5.605 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.243 1.243 22 H -0.183 1.183 23 C 0.023 3.977 24 C -0.128 4.128 25 C -0.078 4.078 26 C -0.123 4.123 27 C -0.155 4.155 28 C -0.144 4.144 29 C -0.146 4.146 30 C -0.137 4.137 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.249 0.751 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.148 0.852 48 H 0.160 0.840 49 H 0.164 0.836 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.271 15.142 -24.345 28.987 hybrid contribution -0.931 -0.460 0.780 1.299 sum 3.340 14.683 -23.565 27.965 Atomic orbital electron populations 1.24187 0.94835 1.03855 0.96330 1.22493 0.96320 0.95899 1.03956 1.19439 0.96380 0.99740 0.89404 0.84999 1.20786 0.88468 0.74805 0.84868 1.90698 1.16606 1.50456 1.87025 1.45306 1.10969 1.73166 1.04151 1.21667 0.95400 1.04764 0.80383 0.86018 1.23666 1.04107 0.92150 1.00252 1.21767 0.96930 0.95617 0.97842 1.21430 0.94316 0.99823 0.96909 1.21341 0.91952 0.96062 0.90510 1.44411 1.11284 1.29943 1.48705 1.18857 0.93829 0.97030 1.28164 0.93623 1.25969 0.99521 0.98366 0.99412 1.69985 1.18320 1.20714 1.51525 0.85830 0.78614 0.81194 0.76429 1.19735 1.24307 1.18309 1.21036 0.85121 0.96288 0.95227 1.21520 0.96765 0.99698 0.94840 1.19380 0.96822 0.96280 0.95309 1.20978 0.95546 0.98744 0.96999 1.21363 0.99842 0.99636 0.94647 1.21467 0.98561 0.94583 0.99785 1.21439 0.95702 0.99605 0.97854 1.21306 1.00484 0.97533 0.94418 0.86099 0.87063 0.87957 0.75143 0.87398 0.86936 0.89906 0.93062 0.93402 0.94344 0.93008 0.92937 0.94172 0.93424 0.89652 0.87885 0.85165 0.84019 0.83571 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 14.32 67.78 0.97 -0.98 16 2 C -0.17 -2.79 8.19 25.64 0.21 -2.58 16 3 C -0.03 -0.51 2.67 -13.03 -0.03 -0.54 16 4 H 0.13 1.59 7.52 -2.39 -0.02 1.58 16 5 C 0.52 12.49 7.01 87.66 0.61 13.11 16 6 O -0.57 -18.09 14.65 -3.03 -0.04 -18.14 16 7 N -0.69 -14.76 5.24 -442.78 -2.32 -17.09 16 8 C 0.08 2.05 6.14 44.94 0.28 2.33 16 9 H 0.12 3.33 7.40 -2.39 -0.02 3.32 16 10 C -0.16 -3.58 9.86 30.55 0.30 -3.28 16 11 C -0.12 -3.31 1.94 -52.17 -0.10 -3.41 16 12 C -0.09 -2.66 5.37 30.77 0.17 -2.50 16 13 C 0.13 5.06 4.23 86.43 0.37 5.42 16 14 N -0.62 -28.58 2.71 -698.90 -1.89 -30.47 16 15 C -0.25 -14.14 10.00 84.03 0.84 -13.30 16 16 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 17 C -0.04 -2.23 5.23 84.86 0.44 -1.79 16 18 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 19 Si 0.95 45.78 24.40 68.60 1.67 47.46 16 20 H -0.27 -12.09 6.66 99.48 0.66 -11.42 16 21 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 22 H -0.26 -11.83 6.65 99.48 0.66 -11.17 16 23 C 0.15 5.57 6.52 86.43 0.56 6.14 16 24 C -0.09 -2.75 5.83 30.77 0.18 -2.57 16 25 C -0.08 -1.58 4.39 -19.87 -0.09 -1.67 16 26 C -0.10 -2.40 8.03 22.27 0.18 -2.22 16 27 C -0.14 -2.70 10.05 22.27 0.22 -2.48 16 28 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 29 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 30 C -0.12 -2.00 9.67 22.27 0.22 -1.78 16 31 H 0.12 1.02 7.83 -2.91 -0.02 0.99 16 32 H 0.11 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.10 1.96 8.05 -2.91 -0.02 1.94 16 34 H 0.41 7.20 7.01 -92.71 -0.65 6.55 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 1.98 6.75 -2.39 -0.02 1.96 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.05 2.14 4.31 -2.39 -0.01 2.13 16 40 H 0.04 1.46 7.27 -2.39 -0.02 1.44 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 46 H 0.10 2.57 7.97 -2.91 -0.02 2.54 16 47 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 49 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 50 H 0.14 1.62 7.95 -2.91 -0.02 1.59 16 Total: -1.00 -73.84 398.31 3.68 -70.16 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.19 Total: 23.87 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.77 Total: -15.67 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.91 Total: -107.68 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.04 Total: -18.14 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.46 kcal Total: -73.84 3.68 -70.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265335621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.432 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds