Wall clock time and date at job start Wed Apr 1 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 109.99886 * 2 1 4 4 C 1.54328 * 109.88576 * 121.08886 * 2 1 3 5 5 C 1.55161 * 102.93814 * 97.22737 * 4 2 1 6 6 H 1.08999 * 110.99978 * 277.38858 * 5 4 2 7 7 N 1.46898 * 111.00090 * 153.58209 * 5 4 2 8 8 C 1.47018 * 110.99911 * 185.61299 * 7 5 4 9 9 C 1.53097 * 109.25617 * 177.60135 * 8 7 5 10 10 O 1.43019 * 109.25589 * 56.85492 * 9 8 7 11 11 C 1.43022 * 113.73356 * 301.32285 * 10 9 8 12 12 C 1.47016 * 111.00417 * 61.97700 * 7 5 4 13 13 C 1.54906 * 101.61715 * 35.48335 * 5 4 2 14 14 N 1.47023 * 109.88677 * 238.90368 * 2 1 3 15 15 C 1.34773 * 125.64826 * 59.54731 * 14 2 1 16 16 O 1.21587 * 120.00101 * 0.02562 * 15 14 2 17 17 N 1.34778 * 119.99985 * 180.02562 * 15 14 2 18 18 C 1.46495 * 119.99958 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46987 * 180.02562 * 18 17 15 20 20 O 1.21288 * 120.00010 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00124 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00104 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00037 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00131 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99734 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00336 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46884 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47330 * 119.99810 * 26 24 22 29 29 H 1.48496 * 109.47218 * 239.99966 * 26 24 22 30 30 H 1.08997 * 109.47346 * 298.90746 * 1 2 3 31 31 H 1.09000 * 109.47583 * 58.91024 * 1 2 3 32 32 H 1.09005 * 109.46967 * 178.90709 * 1 2 3 33 33 H 1.09003 * 110.71820 * 338.86383 * 4 2 1 34 34 H 1.08998 * 110.87216 * 215.66420 * 4 2 1 35 35 H 1.08994 * 109.50775 * 297.53979 * 8 7 5 36 36 H 1.08995 * 109.50286 * 57.67067 * 8 7 5 37 37 H 1.08998 * 109.50944 * 296.91519 * 9 8 7 38 38 H 1.09005 * 109.50416 * 176.77780 * 9 8 7 39 39 H 1.08997 * 109.50573 * 298.73725 * 11 10 9 40 40 H 1.09007 * 109.50253 * 178.60899 * 11 10 9 41 41 H 1.09002 * 109.50447 * 302.32409 * 12 7 5 42 42 H 1.08996 * 109.50466 * 62.41415 * 12 7 5 43 43 H 1.08999 * 110.36575 * 81.85114 * 13 5 4 44 44 H 1.08995 * 110.36573 * 204.16637 * 13 5 4 45 45 H 0.97003 * 119.99825 * 0.02562 * 17 15 14 46 46 H 1.08997 * 109.47208 * 300.00017 * 18 17 15 47 47 H 1.08998 * 109.47228 * 60.00060 * 18 17 15 48 48 H 0.97005 * 120.00099 * 359.97438 * 21 19 18 49 49 H 0.97003 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7494 1.2428 5 6 2.3519 -2.1694 0.6925 6 1 1.4454 -2.7737 0.6612 7 7 3.3966 -2.8328 1.4840 8 6 3.7724 -4.1219 0.8853 9 6 4.9023 -4.7495 1.7059 10 8 4.4781 -4.8869 3.0648 11 6 4.1052 -3.6504 3.6793 12 6 2.9673 -3.0117 2.8787 13 6 2.8564 -1.8507 -0.7370 14 7 2.0300 -0.7141 -1.1839 15 6 1.7753 -0.3846 -2.4656 16 8 1.0772 0.5782 -2.7187 17 7 2.2943 -1.1225 -3.4670 18 6 2.0178 -0.7640 -4.8603 19 6 2.7091 -1.7404 -5.7768 20 8 3.3676 -2.6467 -5.3118 21 7 2.5949 -1.6071 -7.1131 22 6 3.2234 -2.4956 -7.9468 23 1 3.8103 -3.3020 -7.5328 24 6 3.1061 -2.3578 -9.3245 25 7 2.3923 -1.3761 -9.8282 26 14 3.9630 -3.5679 -10.4605 27 1 4.6969 -4.5730 -9.6502 28 1 2.9527 -4.2554 -11.3043 29 1 4.9201 -2.8380 -11.3301 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5306 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 1.2918 -0.7888 2.0202 34 1 2.9651 -0.2841 1.6211 35 1 2.9098 -4.7881 0.8844 36 1 4.1112 -3.9627 -0.1384 37 1 5.7829 -4.1087 1.6625 38 1 5.1452 -5.7313 1.2995 39 1 4.9627 -2.9778 3.6932 40 1 3.7717 -3.8374 4.7001 41 1 2.7184 -2.0421 3.3101 42 1 2.0913 -3.6595 2.9096 43 1 3.9089 -1.5680 -0.7136 44 1 2.7080 -2.7092 -1.3919 45 1 2.8509 -1.8908 -3.2651 46 1 0.9429 -0.7982 -5.0378 47 1 2.3866 0.2427 -5.0565 48 1 2.0674 -0.8829 -7.4849 49 1 2.3101 -1.2802 -10.7900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358284563.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:18 Heat of formation + Delta-G solvation = -120.095690 kcal Electronic energy + Delta-G solvation = -30244.482792 eV Core-core repulsion = 26012.772450 eV Total energy + Delta-G solvation = -4231.710342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.72602 -40.64782 -40.08645 -38.77808 -36.32911 -36.13296 -35.37434 -33.41697 -32.84067 -32.05790 -31.35632 -29.08321 -27.47958 -27.01280 -26.33987 -24.74227 -23.45754 -22.03340 -21.39301 -21.13839 -20.72578 -20.05730 -19.29674 -17.86711 -17.54968 -17.14352 -17.01514 -16.96111 -16.61595 -16.31012 -16.07585 -15.91189 -15.85856 -15.69056 -15.35882 -15.06633 -14.72626 -14.46899 -14.27724 -14.01454 -13.94486 -13.69141 -13.55762 -13.30669 -13.19489 -12.96830 -12.91497 -12.70905 -12.45359 -12.32604 -12.13854 -12.11135 -11.78198 -11.76620 -11.58910 -11.43289 -11.27429 -10.64204 -10.57394 -10.33320 -10.10563 -9.60619 -9.47105 -8.51844 -6.02059 1.34496 1.39421 1.44648 1.57418 1.87777 2.05321 2.26614 2.52480 2.93378 3.00583 3.15319 3.17297 3.29755 3.56850 3.95432 3.98260 4.01814 4.12073 4.18831 4.20721 4.23576 4.28006 4.36020 4.39251 4.41153 4.43118 4.54827 4.61286 4.68883 4.74467 4.76331 4.84354 4.88213 4.93640 4.98795 5.06413 5.09362 5.24332 5.29721 5.38114 5.44766 5.85518 5.91136 5.91784 5.98416 6.20827 6.46764 6.86277 7.02544 7.39771 7.47986 7.92894 8.65332 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.002373 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.231730 B =11794.544054 C =13733.754481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.072 0.928 4 C -0.103 4.103 5 C 0.081 3.919 6 H 0.058 0.942 7 N -0.527 5.527 8 C 0.013 3.987 9 C 0.065 3.935 10 O -0.407 6.407 11 C 0.060 3.940 12 C 0.019 3.981 13 C 0.106 3.894 14 N -0.630 5.630 15 C 0.721 3.279 16 O -0.622 6.622 17 N -0.725 5.725 18 C 0.142 3.858 19 C 0.434 3.566 20 O -0.623 6.623 21 N -0.559 5.559 22 C -0.335 4.335 23 H 0.087 0.913 24 C -0.012 4.012 25 N -0.916 5.916 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.407 0.593 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.399 0.601 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -1.065 27.312 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.028 4.028 6 H 0.076 0.924 7 N -0.252 5.252 8 C -0.115 4.115 9 C -0.012 4.012 10 O -0.326 6.326 11 C -0.017 4.017 12 C -0.109 4.109 13 C -0.017 4.017 14 N -0.368 5.368 15 C 0.423 3.577 16 O -0.504 6.504 17 N -0.383 5.383 18 C 0.013 3.987 19 C 0.221 3.779 20 O -0.511 6.511 21 N -0.194 5.194 22 C -0.464 4.464 23 H 0.104 0.896 24 C -0.212 4.212 25 N -0.556 5.556 26 Si 0.821 3.179 27 H -0.194 1.194 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.245 0.755 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.233 0.767 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.485 -0.760 27.224 27.239 hybrid contribution -0.482 -0.703 -1.461 1.692 sum 0.003 -1.463 25.762 25.804 Atomic orbital electron populations 1.22124 0.94650 1.01953 1.02845 1.21588 0.94717 0.96183 0.83003 0.91039 1.22753 1.03158 0.92604 0.95569 1.22625 0.92679 0.95891 0.91641 0.92427 1.62233 1.38941 1.21597 1.02469 1.22853 0.98827 0.89936 0.99931 1.22720 0.95489 1.01923 0.81081 1.87971 1.86186 1.31929 1.26554 1.22838 0.96642 0.85283 0.96894 1.22862 0.97366 1.02438 0.88222 1.22332 0.95627 0.88355 0.95373 1.47553 1.53838 1.32261 1.03180 1.15415 0.80094 0.82122 0.80054 1.90868 1.44917 1.31297 1.83276 1.44757 1.55691 1.33651 1.04168 1.20592 1.00597 0.97555 0.79923 1.20367 0.85907 0.88134 0.83477 1.90460 1.47071 1.37653 1.75962 1.41840 1.45076 1.28117 1.04395 1.19764 1.29211 1.09477 0.87995 0.89552 1.26147 0.97478 0.99189 0.98409 1.69691 1.39854 1.31655 1.14423 0.84802 0.77985 0.77653 0.77484 1.19371 1.19650 1.19623 0.89065 0.93962 0.92894 0.87436 0.88421 0.94314 0.89276 0.91880 0.87496 0.91884 0.86727 0.87342 0.94247 0.90124 0.91518 0.75514 0.89103 0.89034 0.76695 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.05 71.98 0.65 -2.46 16 2 C 0.15 2.93 3.49 45.34 0.16 3.09 16 3 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 4 C -0.10 -1.26 4.90 31.79 0.16 -1.10 16 5 C 0.08 1.22 2.70 46.31 0.13 1.35 16 6 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 7 N -0.53 -7.36 4.63 -861.89 -3.99 -11.35 16 8 C 0.01 0.19 5.47 86.31 0.47 0.67 16 9 C 0.06 0.94 7.01 72.01 0.50 1.45 16 10 O -0.41 -6.89 10.83 -148.98 -1.61 -8.50 16 11 C 0.06 0.67 7.01 72.01 0.50 1.18 16 12 C 0.02 0.20 5.47 86.31 0.47 0.67 16 13 C 0.11 2.18 5.03 86.85 0.44 2.62 16 14 N -0.63 -16.13 3.08 -805.79 -2.48 -18.62 16 15 C 0.72 24.47 8.27 179.06 1.48 25.95 16 16 O -0.62 -24.75 15.25 -3.99 -0.06 -24.81 16 17 N -0.72 -25.46 5.49 -482.31 -2.65 -28.11 16 18 C 0.14 5.40 6.15 85.64 0.53 5.92 16 19 C 0.43 20.31 7.85 87.66 0.69 21.00 16 20 O -0.62 -32.39 15.24 -3.06 -0.05 -32.43 16 21 N -0.56 -28.29 5.29 -306.99 -1.62 -29.91 16 22 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 23 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 26 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.14 6.77 -2.39 -0.02 1.12 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 0.83 7.73 -2.39 -0.02 0.81 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 1.40 7.04 -2.39 -0.02 1.38 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.11 0.74 7.09 -2.39 -0.02 0.72 16 42 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.47 7.12 -2.39 -0.02 1.45 16 45 H 0.41 14.14 5.92 -92.71 -0.55 13.59 16 46 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 49 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.30 390.31 -3.00 -72.30 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.31 Total: 43.68 kcal Atomic # 6 Polarization: 35.03 SS G_CDS: 7.46 Total: 42.49 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -10.46 Total: -136.54 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -1.72 Total: -65.74 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.30 -3.00 -72.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358284563.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.795 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds