Wall clock time and date at job start Wed Apr 1 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21281 * 120.00408 * 2 1 4 4 N 1.34777 * 120.00388 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00585 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46794 * 34.99496 * 5 4 2 7 7 C 1.53001 * 109.47371 * 154.99562 * 5 4 2 8 8 C 1.50694 * 109.47168 * 295.00048 * 7 5 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 5 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 5 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08999 * 110.88582 * 51.11126 * 12 11 10 14 14 C 1.54918 * 110.99999 * 287.19395 * 12 11 10 15 15 N 1.47429 * 104.83028 * 204.91555 * 14 12 11 16 16 C 1.36929 * 125.64735 * 204.08359 * 15 14 12 17 17 H 1.08001 * 120.00558 * 0.03004 * 16 15 14 18 18 C 1.38821 * 120.00135 * 180.02562 * 16 15 14 19 19 N 1.31611 * 119.99617 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47693 * 119.99831 * 20 18 16 23 23 H 1.48508 * 109.46709 * 239.99505 * 20 18 16 24 24 C 1.47025 * 108.70078 * 24.12716 * 15 14 12 25 25 C 1.54315 * 107.27576 * 358.94180 * 24 15 14 26 26 H 1.09008 * 110.72219 * 96.16590 * 25 24 15 27 27 C 1.53001 * 110.87443 * 219.37138 * 25 24 15 28 28 C 1.50699 * 109.47007 * 274.99990 * 5 4 2 29 29 N 1.34782 * 120.00138 * 179.97438 * 28 5 4 30 30 O 1.21284 * 119.99950 * 359.97438 * 28 5 4 31 31 H 1.09003 * 109.47288 * 239.99875 * 1 2 3 32 32 H 1.09000 * 109.47242 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.47412 * 120.00260 * 1 2 3 34 34 H 0.97009 * 119.99609 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.46837 * 175.00069 * 7 5 4 36 36 H 1.09002 * 109.46926 * 54.99873 * 7 5 4 37 37 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 39 39 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 40 40 H 1.08994 * 110.36503 * 323.74922 * 14 12 11 41 41 H 1.08993 * 110.36842 * 86.07898 * 14 12 11 42 42 H 0.97007 * 120.00216 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.88175 * 239.52186 * 24 15 14 44 44 H 1.09003 * 109.87875 * 118.36419 * 24 15 14 45 45 H 1.09004 * 109.46785 * 173.61038 * 27 25 24 46 46 H 1.08994 * 109.47016 * 293.60909 * 27 25 24 47 47 H 1.08996 * 109.47027 * 53.61030 * 27 25 24 48 48 H 0.96996 * 119.99435 * 359.97438 * 29 28 5 49 49 H 0.96998 * 119.99627 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0089 -0.3257 0.5901 7 6 4.1556 -2.4749 0.6091 8 6 3.7564 -2.5422 2.0606 9 8 3.1266 -1.6335 2.5592 10 7 4.0993 -3.6123 2.8049 11 6 3.7164 -3.6750 4.2176 12 6 4.2250 -4.9833 4.8263 13 1 5.2855 -5.1229 4.6168 14 6 3.3949 -6.1901 4.3216 15 7 3.5404 -7.2140 5.3723 16 6 3.3966 -8.5642 5.1962 17 1 3.1563 -8.9590 4.2200 18 6 3.5597 -9.4259 6.2723 19 7 3.8531 -8.9450 7.4617 20 14 3.3642 -11.2680 6.0318 21 1 3.0372 -11.5498 4.6109 22 1 4.6317 -11.9518 6.3934 23 1 2.2675 -11.7669 6.9000 24 6 3.8645 -6.5450 6.6408 25 6 3.9484 -5.0314 6.3523 26 1 3.0042 -4.5407 6.5886 27 6 5.0990 -4.3909 7.1313 28 6 4.1487 -1.0424 -1.4151 29 7 5.4739 -1.0203 -1.6599 30 8 3.3609 -0.9619 -2.3337 31 1 -0.3634 -0.5139 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3634 -0.5139 -0.8900 34 1 1.6958 -2.0073 -0.0005 35 1 5.2419 -2.5138 0.5288 36 1 3.7212 -3.3189 0.0733 37 1 4.6033 -4.3389 2.4063 38 1 4.1555 -2.8318 4.7508 39 1 2.6304 -3.6326 4.3020 40 1 2.3479 -5.9093 4.2080 41 1 3.7950 -6.5570 3.3765 42 1 3.9674 -9.5471 8.2137 43 1 4.8228 -6.9047 7.0154 44 1 3.0811 -6.7399 7.3733 45 1 5.2095 -3.3503 6.8261 46 1 4.8840 -4.4355 8.1989 47 1 6.0230 -4.9305 6.9239 48 1 6.1039 -1.0844 -0.9252 49 1 5.7975 -0.9404 -2.5708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102437708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:38 Heat of formation + Delta-G solvation = -97.814062 kcal Electronic energy + Delta-G solvation = -30017.239360 eV Core-core repulsion = 25786.495222 eV Total energy + Delta-G solvation = -4230.744138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.86055 -39.58937 -38.90801 -38.08535 -35.29180 -34.68876 -34.10648 -33.03149 -31.78410 -30.79755 -29.88097 -28.88745 -26.28340 -25.71328 -24.72144 -22.78511 -21.41269 -20.76818 -20.54068 -20.08075 -19.29934 -18.32810 -17.52180 -17.09291 -16.98738 -16.63237 -16.25093 -15.82323 -15.52331 -15.14144 -15.01026 -14.70462 -14.32053 -14.13960 -13.81548 -13.68687 -13.46886 -13.41599 -13.00628 -12.87610 -12.59090 -12.47634 -12.33574 -12.03875 -11.85146 -11.74155 -11.46525 -11.28225 -10.86668 -10.84252 -10.62902 -10.29945 -10.13294 -10.07565 -10.03747 -10.03283 -9.97778 -9.77383 -9.61798 -9.27708 -9.08228 -8.66332 -6.89304 -5.77066 -3.10826 2.19647 2.43442 2.49939 2.82309 2.98828 3.35026 3.38170 3.40581 3.43118 4.08571 4.36593 4.43801 4.59803 4.63894 4.80527 4.90416 5.03812 5.11449 5.12893 5.24458 5.25466 5.28571 5.46771 5.49897 5.67865 5.68141 5.79133 5.94982 6.02061 6.07929 6.11382 6.20618 6.32251 6.38020 6.42095 6.49035 6.55883 6.68853 6.86510 6.88791 7.27831 7.37883 7.51171 7.58393 7.78253 7.85201 8.06242 8.10004 8.20094 9.16189 9.76610 10.42334 11.34499 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002182 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.417706 B =12829.253524 C =13209.139810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.527 3.473 3 O -0.548 6.548 4 N -0.700 5.700 5 C 0.146 3.854 6 H 0.124 0.876 7 C -0.150 4.150 8 C 0.509 3.491 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.133 3.867 12 C -0.113 4.113 13 H 0.080 0.920 14 C 0.142 3.858 15 N -0.607 5.607 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.183 3.817 25 C -0.110 4.110 26 H 0.067 0.933 27 C -0.134 4.134 28 C 0.508 3.492 29 N -0.854 5.854 30 O -0.530 6.530 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.404 0.596 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.402 0.598 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.018 0.982 41 H 0.035 0.965 42 H 0.252 0.748 43 H 0.049 0.951 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.402 0.598 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 14.274 -13.745 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.315 3.685 3 O -0.425 6.425 4 N -0.352 5.352 5 C 0.036 3.964 6 H 0.142 0.858 7 C -0.191 4.191 8 C 0.293 3.707 9 O -0.406 6.406 10 N -0.373 5.373 11 C 0.009 3.991 12 C -0.133 4.133 13 H 0.098 0.902 14 C 0.016 3.984 15 N -0.333 5.333 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.058 3.942 25 C -0.130 4.130 26 H 0.085 0.915 27 C -0.192 4.192 28 C 0.290 3.710 29 N -0.419 5.419 30 O -0.404 6.404 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.239 0.761 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.230 0.770 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.186 15.528 -13.693 20.818 hybrid contribution 0.493 -1.931 -0.227 2.006 sum 2.678 13.597 -13.920 19.642 Atomic orbital electron populations 1.21876 0.91405 1.05497 1.04363 1.20675 0.90642 0.83081 0.74134 1.90690 1.70835 1.31448 1.49575 1.45421 1.04684 1.09421 1.75625 1.20462 0.83229 1.00020 0.92671 0.85846 1.21974 1.04053 0.98477 0.94609 1.20249 0.80120 0.82479 0.87821 1.90776 1.39283 1.37294 1.73226 1.46074 1.57573 1.21608 1.12087 1.21417 1.00295 0.97966 0.79385 1.22683 1.00356 0.93477 0.96760 0.90162 1.21576 0.95809 0.88449 0.92561 1.44470 1.82977 1.01595 1.04220 1.19082 1.41230 0.80369 0.95080 0.90455 1.24808 1.01894 0.98150 0.95593 1.69968 1.54354 1.32945 0.99534 0.86057 0.77327 0.85133 0.77304 1.20526 1.21754 1.21738 1.21223 1.00417 0.84304 0.88208 1.22438 0.97968 1.00056 0.92561 0.91459 1.21690 0.98337 0.99111 1.00041 1.21111 0.82697 0.75319 0.91823 1.43857 1.07254 1.77810 1.12937 1.90749 1.55368 1.48328 1.45990 0.89156 0.89020 0.89347 0.76124 0.86947 0.87409 0.76360 0.91590 0.91320 0.96411 0.94681 0.93768 0.93290 0.94036 0.93672 0.92745 0.92718 0.76974 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.32 36.00 0.37 -1.06 16 2 C 0.53 6.50 7.77 -10.99 -0.09 6.42 16 3 O -0.55 -8.99 16.75 5.56 0.09 -8.90 16 4 N -0.70 -7.07 3.75 -54.94 -0.21 -7.27 16 5 C 0.15 1.32 1.94 -69.08 -0.13 1.18 16 6 H 0.12 1.33 7.39 -51.93 -0.38 0.94 16 7 C -0.15 -0.91 5.19 -27.89 -0.14 -1.05 16 8 C 0.51 4.98 7.69 -10.98 -0.08 4.90 16 9 O -0.53 -7.35 15.35 5.56 0.09 -7.27 16 10 N -0.72 -6.96 5.50 -60.29 -0.33 -7.29 16 11 C 0.13 1.65 5.13 -4.04 -0.02 1.63 16 12 C -0.11 -1.67 2.49 -88.46 -0.22 -1.89 16 13 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 14 C 0.14 2.62 6.65 -2.52 -0.02 2.61 16 15 N -0.61 -14.62 3.39 -170.07 -0.58 -15.19 16 16 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.31 10.31 55.49 0.57 -25.74 16 20 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.18 4.20 4.97 -3.07 -0.02 4.18 16 25 C -0.11 -1.87 3.01 -88.79 -0.27 -2.14 16 26 H 0.07 1.12 8.04 -51.92 -0.42 0.70 16 27 C -0.13 -1.95 9.17 37.16 0.34 -1.61 16 28 C 0.51 4.83 7.46 -10.98 -0.08 4.74 16 29 N -0.85 -4.42 8.74 31.22 0.27 -4.15 16 30 O -0.53 -7.30 17.16 5.55 0.10 -7.21 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 3.20 8.60 -40.82 -0.35 2.85 16 35 H 0.11 0.32 7.43 -51.93 -0.39 -0.06 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 3.08 8.47 -40.82 -0.35 2.74 16 38 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.07 0.95 7.96 -51.93 -0.41 0.53 16 40 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 1.25 7.02 -51.93 -0.36 0.88 16 44 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 45 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 48 H 0.40 0.89 8.19 -40.82 -0.33 0.56 16 49 H 0.40 1.77 8.93 -40.82 -0.36 1.41 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -38.28 404.08 -7.46 -45.74 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.92 Total: 3.43 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.61 Total: 11.29 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.27 Total: -59.64 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.27 Total: -23.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.28 -7.46 -45.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102437708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.073 kcal (2) G-P(sol) polarization free energy of solvation -38.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds