Wall clock time and date at job start Wed Apr 1 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21281 * 120.00408 * 2 1 4 4 N 1.34777 * 120.00388 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00585 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46794 * 34.99496 * 5 4 2 7 7 C 1.53001 * 109.47371 * 154.99562 * 5 4 2 8 8 C 1.50694 * 109.47168 * 295.00048 * 7 5 4 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 5 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 5 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08999 * 110.88582 * 51.11126 * 12 11 10 14 14 C 1.54918 * 110.99999 * 287.19395 * 12 11 10 15 15 N 1.47429 * 104.83028 * 204.91555 * 14 12 11 16 16 C 1.36929 * 125.64735 * 204.08359 * 15 14 12 17 17 H 1.08001 * 120.00558 * 0.03004 * 16 15 14 18 18 C 1.38821 * 120.00135 * 180.02562 * 16 15 14 19 19 N 1.31611 * 119.99617 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47693 * 119.99831 * 20 18 16 23 23 H 1.48508 * 109.46709 * 239.99505 * 20 18 16 24 24 C 1.47025 * 108.70078 * 24.12716 * 15 14 12 25 25 C 1.54315 * 107.27576 * 358.94180 * 24 15 14 26 26 H 1.09008 * 110.72219 * 96.16590 * 25 24 15 27 27 C 1.53001 * 110.87443 * 219.37138 * 25 24 15 28 28 C 1.50699 * 109.47007 * 274.99990 * 5 4 2 29 29 N 1.34782 * 120.00138 * 179.97438 * 28 5 4 30 30 O 1.21284 * 119.99950 * 359.97438 * 28 5 4 31 31 H 1.09003 * 109.47288 * 239.99875 * 1 2 3 32 32 H 1.09000 * 109.47242 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.47412 * 120.00260 * 1 2 3 34 34 H 0.97009 * 119.99609 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.46837 * 175.00069 * 7 5 4 36 36 H 1.09002 * 109.46926 * 54.99873 * 7 5 4 37 37 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 39 39 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 40 40 H 1.08994 * 110.36503 * 323.74922 * 14 12 11 41 41 H 1.08993 * 110.36842 * 86.07898 * 14 12 11 42 42 H 0.97007 * 120.00216 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.88175 * 239.52186 * 24 15 14 44 44 H 1.09003 * 109.87875 * 118.36419 * 24 15 14 45 45 H 1.09004 * 109.46785 * 173.61038 * 27 25 24 46 46 H 1.08994 * 109.47016 * 293.60909 * 27 25 24 47 47 H 1.08996 * 109.47027 * 53.61030 * 27 25 24 48 48 H 0.96996 * 119.99435 * 359.97438 * 29 28 5 49 49 H 0.96998 * 119.99627 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0089 -0.3257 0.5901 7 6 4.1556 -2.4749 0.6091 8 6 3.7564 -2.5422 2.0606 9 8 3.1266 -1.6335 2.5592 10 7 4.0993 -3.6123 2.8049 11 6 3.7164 -3.6750 4.2176 12 6 4.2250 -4.9833 4.8263 13 1 5.2855 -5.1229 4.6168 14 6 3.3949 -6.1901 4.3216 15 7 3.5404 -7.2140 5.3723 16 6 3.3966 -8.5642 5.1962 17 1 3.1563 -8.9590 4.2200 18 6 3.5597 -9.4259 6.2723 19 7 3.8531 -8.9450 7.4617 20 14 3.3642 -11.2680 6.0318 21 1 3.0372 -11.5498 4.6109 22 1 4.6317 -11.9518 6.3934 23 1 2.2675 -11.7669 6.9000 24 6 3.8645 -6.5450 6.6408 25 6 3.9484 -5.0314 6.3523 26 1 3.0042 -4.5407 6.5886 27 6 5.0990 -4.3909 7.1313 28 6 4.1487 -1.0424 -1.4151 29 7 5.4739 -1.0203 -1.6599 30 8 3.3609 -0.9619 -2.3337 31 1 -0.3634 -0.5139 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3634 -0.5139 -0.8900 34 1 1.6958 -2.0073 -0.0005 35 1 5.2419 -2.5138 0.5288 36 1 3.7212 -3.3189 0.0733 37 1 4.6033 -4.3389 2.4063 38 1 4.1555 -2.8318 4.7508 39 1 2.6304 -3.6326 4.3020 40 1 2.3479 -5.9093 4.2080 41 1 3.7950 -6.5570 3.3765 42 1 3.9674 -9.5471 8.2137 43 1 4.8228 -6.9047 7.0154 44 1 3.0811 -6.7399 7.3733 45 1 5.2095 -3.3503 6.8261 46 1 4.8840 -4.4355 8.1989 47 1 6.0230 -4.9305 6.9239 48 1 6.1039 -1.0844 -0.9252 49 1 5.7975 -0.9404 -2.5708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102437708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:37 Heat of formation + Delta-G solvation = -130.576143 kcal Electronic energy + Delta-G solvation = -30018.660031 eV Core-core repulsion = 25786.495222 eV Total energy + Delta-G solvation = -4232.164809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.64354 -40.51951 -39.77150 -39.48579 -36.25174 -35.76936 -34.78466 -34.62017 -32.56693 -32.50370 -30.95686 -29.81387 -27.85908 -26.95743 -25.87043 -24.23773 -22.22956 -21.73272 -21.53029 -21.30536 -20.61792 -19.07258 -18.75482 -18.23920 -17.89786 -17.60105 -17.11576 -16.77589 -16.57101 -16.33384 -15.97709 -15.83078 -15.60509 -15.45363 -14.91769 -14.74443 -14.49698 -14.42156 -14.22529 -14.10395 -13.66406 -13.41919 -13.27841 -13.07893 -13.03581 -13.02122 -12.83219 -12.68607 -12.61794 -12.36910 -11.88507 -11.81662 -11.52675 -11.47474 -11.37848 -11.33031 -10.99429 -10.84147 -10.69490 -10.66237 -10.11099 -9.97470 -8.86569 -7.82881 -5.17886 1.47197 1.47898 1.48302 1.57868 1.63743 1.70354 2.11503 2.20982 2.50868 2.73472 3.35745 3.45762 3.65900 3.69419 3.85816 3.95303 3.98680 3.99702 4.07162 4.21611 4.41647 4.45325 4.52016 4.54576 4.64368 4.64987 4.68263 4.77897 4.89061 4.91309 5.01357 5.04868 5.12498 5.20111 5.34955 5.37521 5.44463 5.50608 5.55932 5.74454 5.84784 5.87478 6.22855 6.38976 6.50121 6.63583 7.12954 7.23921 7.29649 7.32338 7.81425 8.45505 9.27521 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002182 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.417706 B =12829.253524 C =13209.139810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.600 6.600 4 N -0.695 5.695 5 C 0.144 3.856 6 H 0.105 0.895 7 C -0.137 4.137 8 C 0.511 3.489 9 O -0.572 6.572 10 N -0.713 5.713 11 C 0.146 3.854 12 C -0.089 4.089 13 H 0.092 0.908 14 C 0.138 3.862 15 N -0.630 5.630 16 C -0.237 4.237 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.297 1.297 24 C 0.191 3.809 25 C -0.102 4.102 26 H 0.071 0.929 27 C -0.127 4.127 28 C 0.508 3.492 29 N -0.830 5.830 30 O -0.578 6.578 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.415 0.585 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.017 0.983 41 H 0.053 0.947 42 H 0.245 0.755 43 H 0.015 0.985 44 H -0.004 1.004 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.419 0.581 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 14.249 -15.691 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.302 3.698 3 O -0.481 6.481 4 N -0.346 5.346 5 C 0.033 3.967 6 H 0.123 0.877 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.451 6.451 10 N -0.366 5.366 11 C 0.022 3.978 12 C -0.109 4.109 13 H 0.110 0.890 14 C 0.013 3.987 15 N -0.356 5.356 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.224 1.224 24 C 0.066 3.934 25 C -0.122 4.122 26 H 0.089 0.911 27 C -0.185 4.185 28 C 0.291 3.709 29 N -0.396 5.396 30 O -0.457 6.457 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.014 0.986 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.251 0.749 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.267 15.465 -15.676 22.262 hybrid contribution 0.185 -1.924 0.366 1.967 sum 3.452 13.541 -15.310 20.729 Atomic orbital electron populations 1.21893 0.88752 1.05909 1.06000 1.21410 0.92242 0.82911 0.73262 1.90653 1.72077 1.33183 1.52202 1.45462 1.05482 1.09348 1.74275 1.20529 0.82728 1.00982 0.92428 0.87718 1.21993 1.06586 0.97520 0.91580 1.20764 0.78978 0.81460 0.88965 1.90780 1.41200 1.38811 1.74334 1.45910 1.57541 1.22179 1.10933 1.21084 0.99423 0.96284 0.81031 1.22471 1.00393 0.93232 0.94756 0.88997 1.21786 0.96459 0.88502 0.91976 1.44810 1.82747 1.01935 1.06094 1.19504 1.39806 0.82039 0.95246 0.89713 1.25638 1.02664 1.02355 0.95540 1.70198 1.55957 1.33863 1.00128 0.85050 0.76611 0.80139 0.77795 1.18720 1.22022 1.22426 1.20971 0.96900 0.88293 0.87243 1.22305 0.99468 0.95660 0.94786 0.91064 1.21634 0.96788 1.00514 0.99538 1.21156 0.83566 0.74886 0.91304 1.43672 1.06114 1.75637 1.14128 1.90732 1.56846 1.50984 1.47173 0.87624 0.89332 0.87333 0.74895 0.82897 0.84964 0.74781 0.91035 0.92601 0.96523 0.92908 0.94590 0.96645 0.98585 0.90537 0.93107 0.93199 0.74935 0.75774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.32 71.23 0.74 -1.90 16 2 C 0.51 12.59 7.77 87.65 0.68 13.27 16 3 O -0.60 -20.21 16.75 -3.03 -0.05 -20.26 16 4 N -0.69 -13.25 3.75 -446.11 -1.67 -14.92 16 5 C 0.14 2.33 1.94 44.25 0.09 2.41 16 6 H 0.11 2.16 7.39 -2.39 -0.02 2.15 16 7 C -0.14 -1.13 5.19 29.85 0.15 -0.98 16 8 C 0.51 8.43 7.69 87.65 0.67 9.10 16 9 O -0.57 -14.85 15.35 -3.04 -0.05 -14.89 16 10 N -0.71 -11.10 5.50 -463.05 -2.55 -13.65 16 11 C 0.15 3.20 5.13 86.38 0.44 3.64 16 12 C -0.09 -2.42 2.49 -9.40 -0.02 -2.44 16 13 H 0.09 2.35 8.05 -2.39 -0.02 2.34 16 14 C 0.14 4.83 6.65 86.86 0.58 5.41 16 15 N -0.63 -30.45 3.39 -691.98 -2.35 -32.80 16 16 C -0.24 -12.70 10.28 84.04 0.86 -11.84 16 17 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 18 C -0.07 -3.84 5.49 84.87 0.47 -3.38 16 19 N -0.95 -56.43 10.31 21.65 0.22 -56.20 16 20 Si 0.98 44.59 29.55 68.60 2.03 46.62 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.19 9.01 4.97 86.73 0.43 9.44 16 25 C -0.10 -3.38 3.01 -9.61 -0.03 -3.41 16 26 H 0.07 2.30 8.04 -2.38 -0.02 2.29 16 27 C -0.13 -3.49 9.17 71.98 0.66 -2.83 16 28 C 0.51 8.76 7.46 87.66 0.65 9.41 16 29 N -0.83 -6.34 8.74 -173.52 -1.52 -7.86 16 30 O -0.58 -15.50 17.16 -3.04 -0.05 -15.55 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.41 5.83 8.60 -92.70 -0.80 5.04 16 35 H 0.15 0.05 7.43 -2.39 -0.02 0.03 16 36 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.42 4.46 8.47 -92.71 -0.79 3.67 16 38 H 0.07 1.56 8.08 -2.38 -0.02 1.54 16 39 H 0.06 1.41 7.96 -2.38 -0.02 1.39 16 40 H 0.02 0.61 7.91 -2.39 -0.02 0.59 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.24 14.16 8.31 -92.70 -0.77 13.39 16 43 H 0.02 0.82 7.02 -2.39 -0.02 0.80 16 44 H 0.00 -0.23 7.51 -2.39 -0.02 -0.25 16 45 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 46 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.42 8.07 -2.39 -0.02 1.40 16 48 H 0.42 0.35 8.19 -92.71 -0.76 -0.41 16 49 H 0.41 2.56 8.93 -92.71 -0.83 1.73 16 Total: -1.00 -88.83 404.08 -1.77 -90.60 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -2.16 Total: 13.00 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 6.37 Total: 25.91 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -7.86 Total: -125.43 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.15 Total: -50.70 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -88.83 -1.77 -90.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102437708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.973 kcal (2) G-P(sol) polarization free energy of solvation -88.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds