Wall clock time and date at job start Wed Apr 1 2020 00:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 120.00050 * 2 1 4 4 O 1.21281 * 120.00411 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00046 * 180.27184 * 3 2 1 6 6 C 1.50702 * 109.47337 * 179.72615 * 5 3 2 7 7 O 1.21282 * 119.99761 * 359.97438 * 6 5 3 8 8 N 1.34771 * 119.99921 * 180.02562 * 6 5 3 9 9 C 1.46501 * 119.99853 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50616 * 325.00169 * 9 8 6 11 11 C 1.53115 * 109.50219 * 85.08023 * 9 8 6 12 12 C 1.53205 * 109.11526 * 62.32536 * 11 9 8 13 13 C 1.53035 * 109.30310 * 57.63216 * 12 11 9 14 14 H 1.09004 * 109.46279 * 60.83310 * 13 12 11 15 15 C 1.52995 * 109.46677 * 180.80508 * 13 12 11 16 16 N 1.46853 * 109.51764 * 300.82090 * 13 12 11 17 17 C 1.46902 * 110.99404 * 185.83611 * 16 13 12 18 18 C 1.50707 * 109.46802 * 160.22038 * 17 16 13 19 19 O 1.21294 * 119.99909 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00220 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00213 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99907 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00190 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99580 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00137 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47275 * 59.99895 * 25 23 21 27 27 H 1.48504 * 109.47109 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47216 * 299.99992 * 25 23 21 29 29 C 1.46846 * 111.19881 * 61.74172 * 16 13 12 30 30 H 1.09002 * 109.47384 * 300.00046 * 1 2 3 31 31 H 1.09008 * 109.46953 * 59.99963 * 1 2 3 32 32 H 1.08996 * 109.47691 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99985 * 179.97438 * 2 1 3 34 34 H 1.09004 * 109.47436 * 299.72752 * 5 3 2 35 35 H 1.09002 * 109.47054 * 59.72519 * 5 3 2 36 36 H 0.97006 * 120.00559 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.52230 * 182.19069 * 11 9 8 38 38 H 1.08997 * 109.52227 * 302.38225 * 11 9 8 39 39 H 1.08999 * 109.49080 * 297.67717 * 12 11 9 40 40 H 1.09003 * 109.49203 * 177.57918 * 12 11 9 41 41 H 1.09000 * 109.47497 * 187.76356 * 15 13 12 42 42 H 1.09007 * 109.46799 * 307.76665 * 15 13 12 43 43 H 1.09001 * 109.47108 * 67.75769 * 15 13 12 44 44 H 1.08996 * 109.47639 * 280.21714 * 17 16 13 45 45 H 1.08999 * 109.47494 * 40.22753 * 17 16 13 46 46 H 0.97003 * 119.99972 * 0.02562 * 20 18 17 47 47 H 0.97007 * 119.99863 * 180.02562 * 24 23 21 48 48 H 1.08997 * 109.46099 * 178.23859 * 29 16 13 49 49 H 1.09003 * 109.45360 * 58.26954 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0062 6 6 4.1482 2.5880 -0.0117 7 8 3.3601 3.5098 -0.0111 8 7 5.4732 2.8342 -0.0182 9 6 5.9616 4.2154 -0.0241 10 1 5.2868 4.8375 -0.6121 11 6 6.0217 4.7424 1.4122 12 6 7.0176 3.8992 2.2148 13 6 8.3880 3.9523 1.5357 14 1 8.7403 4.9835 1.5088 15 6 9.3809 3.0950 2.3232 16 7 8.2766 3.4374 0.1649 17 6 9.5975 3.3441 -0.4712 18 6 9.5268 2.3935 -1.6385 19 8 8.4790 1.8479 -1.9136 20 7 10.6275 2.1504 -2.3772 21 6 10.5633 1.2852 -3.4387 22 1 9.6306 0.7988 -3.6832 23 6 11.6982 1.0341 -4.2001 24 7 12.8332 1.6257 -3.9022 25 14 11.6106 -0.1441 -5.6469 26 1 10.6202 0.3564 -6.6337 27 1 12.9460 -0.2390 -6.2896 28 1 11.1961 -1.4870 -5.1673 29 6 7.3626 4.2594 -0.6384 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9500 -0.8401 0.0004 34 1 4.0129 0.6554 0.8835 35 1 4.0055 0.6512 -0.8964 36 1 6.1036 2.0969 -0.0198 37 1 6.3478 5.7825 1.4052 38 1 5.0338 4.6725 1.8674 39 1 6.6708 2.8666 2.2544 40 1 7.0974 4.2959 3.2269 41 1 10.3842 3.2409 1.9230 42 1 9.3620 3.3889 3.3727 43 1 9.1036 2.0446 2.2351 44 1 9.9018 4.3297 -0.8233 45 1 10.3245 2.9765 0.2531 46 1 11.4653 2.5870 -2.1574 47 1 13.6255 1.4507 -4.4340 48 1 7.3252 3.8716 -1.6564 49 1 7.7198 5.2891 -0.6549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131972871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:12 Heat of formation + Delta-G solvation = -101.166214 kcal Electronic energy + Delta-G solvation = -30682.369526 eV Core-core repulsion = 26451.480028 eV Total energy + Delta-G solvation = -4230.889498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.41015 -39.62219 -38.39562 -37.52555 -34.79767 -34.42916 -33.93127 -32.56572 -31.78389 -31.21532 -30.21246 -27.71229 -26.84093 -26.11314 -24.61289 -22.96592 -21.83899 -20.91427 -20.23931 -19.21801 -19.00921 -17.87387 -17.35860 -17.21129 -16.16112 -16.02013 -15.70656 -15.67228 -15.26604 -14.76472 -14.62641 -14.55655 -14.21698 -13.93263 -13.71317 -13.55893 -13.42673 -13.23561 -12.93578 -12.77794 -12.76855 -12.47119 -12.11135 -11.99709 -11.87819 -11.79438 -11.55128 -11.52655 -11.33298 -11.04279 -10.75609 -10.49940 -10.46655 -10.24052 -10.10871 -10.05958 -9.49071 -9.28318 -9.26234 -8.77470 -8.46718 -7.98338 -7.89638 -6.43154 -3.83903 2.59510 2.86215 2.92131 3.17872 3.24040 3.27676 3.58437 3.88876 3.93280 4.21244 4.52498 4.78107 4.82162 4.90161 4.98358 5.01932 5.07206 5.14886 5.23045 5.24321 5.29125 5.31159 5.41699 5.46410 5.56918 5.57521 5.60757 5.67002 5.80088 5.86076 5.96294 5.97200 6.03800 6.09214 6.21318 6.22820 6.24920 6.32498 6.40465 6.79202 7.22708 7.30346 7.36502 7.53061 7.87857 8.04745 8.17784 8.56363 8.60700 9.16800 9.53885 10.05441 10.74559 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.002997 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.649073 B = 9339.316422 C =11537.255369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.743 5.743 3 C 0.512 3.488 4 O -0.494 6.494 5 C -0.167 4.167 6 C 0.512 3.488 7 O -0.512 6.512 8 N -0.707 5.707 9 C 0.157 3.843 10 H 0.087 0.913 11 C -0.133 4.133 12 C -0.106 4.106 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.149 4.149 16 N -0.509 5.509 17 C 0.038 3.962 18 C 0.446 3.554 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.050 3.950 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.095 0.905 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.097 0.903 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -0.666 12.614 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.398 5.398 3 C 0.296 3.704 4 O -0.366 6.366 5 C -0.210 4.210 6 C 0.295 3.705 7 O -0.387 6.387 8 N -0.361 5.361 9 C 0.052 3.948 10 H 0.105 0.895 11 C -0.172 4.172 12 C -0.144 4.144 13 C -0.029 4.029 14 H 0.055 0.945 15 C -0.207 4.207 16 N -0.234 5.234 17 C -0.093 4.093 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.079 4.079 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.113 0.887 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.116 0.884 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.825 -0.037 12.352 18.539 hybrid contribution 1.641 -0.402 -0.709 1.833 sum -12.183 -0.439 11.642 16.857 Atomic orbital electron populations 1.21479 0.79726 1.01936 1.02268 1.45817 1.07650 1.08639 1.77677 1.20123 0.89386 0.83863 0.77034 1.90854 1.69509 1.30446 1.45743 1.21592 0.94215 0.98324 1.06860 1.19872 0.82803 0.90289 0.77518 1.90818 1.54778 1.45297 1.47771 1.45909 1.06342 1.09261 1.74570 1.20857 0.94505 0.83527 0.95936 0.89547 1.22006 0.99945 0.99162 0.96045 1.21581 0.93859 1.01122 0.97837 1.21667 0.95754 0.96463 0.89049 0.94456 1.21945 0.98566 1.01123 0.99037 1.61453 1.09796 1.51334 1.00857 1.21987 0.91176 0.98815 0.97283 1.19760 0.85120 0.86560 0.85463 1.90476 1.29758 1.54136 1.71804 1.41868 1.10225 1.40910 1.27306 1.19616 0.97492 1.20427 1.05211 0.88020 1.25245 0.94833 0.98476 0.99396 1.69602 1.00489 1.43471 1.40839 0.85942 0.77208 0.80381 0.80821 1.19962 1.21032 1.19941 1.22420 0.91055 0.95240 0.99143 0.92408 0.92353 0.90810 0.76605 0.86264 0.85843 0.74831 0.91555 0.91312 0.91060 0.91864 0.92348 0.92405 0.91397 0.93384 0.88749 0.77595 0.91861 0.88433 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.70 59.84 0.64 1.33 16 2 N -0.74 -6.33 5.71 -67.08 -0.38 -6.72 16 3 C 0.51 6.45 7.82 -10.99 -0.09 6.37 16 4 O -0.49 -8.84 14.18 -18.96 -0.27 -9.11 16 5 C -0.17 -1.76 6.19 -29.03 -0.18 -1.94 16 6 C 0.51 7.51 7.79 -10.99 -0.09 7.43 16 7 O -0.51 -9.72 13.84 -18.96 -0.26 -9.98 16 8 N -0.71 -9.73 4.41 -53.73 -0.24 -9.97 16 9 C 0.16 2.17 2.81 -67.85 -0.19 1.98 16 10 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.13 -1.59 5.68 -26.57 -0.15 -1.74 16 12 C -0.11 -1.16 5.20 -26.61 -0.14 -1.30 16 13 C 0.08 0.93 2.44 -67.72 -0.17 0.76 16 14 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 15 C -0.15 -1.60 8.59 37.15 0.32 -1.29 16 16 N -0.51 -7.37 3.53 -228.12 -0.81 -8.17 16 17 C 0.04 0.63 5.31 -4.97 -0.03 0.60 16 18 C 0.45 9.70 7.49 -10.99 -0.08 9.62 16 19 O -0.58 -14.05 14.74 5.55 0.08 -13.97 16 20 N -0.57 -13.64 5.29 -10.96 -0.06 -13.70 16 21 C -0.30 -7.98 9.68 -14.93 -0.14 -8.12 16 22 H 0.10 2.84 7.16 -52.49 -0.38 2.47 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 25 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 29 C 0.05 0.73 4.70 -3.83 -0.02 0.71 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 2.06 8.83 -40.82 -0.36 1.70 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.41 5.78 8.17 -40.82 -0.33 5.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 42 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 45 H 0.09 1.40 5.42 -51.93 -0.28 1.12 16 46 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.10 1.74 6.69 -51.93 -0.35 1.39 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -35.00 395.39 -8.45 -43.45 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -7.77 Total: 15.08 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -0.40 Total: 14.88 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.76 Total: -61.85 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.45 Total: -33.06 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.00 -8.45 -43.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131972871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.721 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds