Wall clock time and date at job start Wed Apr 1 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46705 * 2 1 4 4 C 1.52996 * 109.46850 * 119.99883 * 2 1 3 5 5 C 1.53006 * 109.46944 * 185.00375 * 4 2 1 6 6 H 1.09004 * 109.46711 * 304.99755 * 5 4 2 7 7 C 1.52997 * 109.46867 * 185.00133 * 5 4 2 8 8 N 1.46495 * 109.47533 * 64.99978 * 5 4 2 9 9 C 1.34773 * 120.00262 * 205.00554 * 8 5 4 10 10 O 1.21285 * 119.99608 * 354.91091 * 9 8 5 11 11 C 1.50698 * 120.00257 * 174.92128 * 9 8 5 12 12 C 1.50699 * 115.54647 * 293.95779 * 11 9 8 13 13 N 1.34779 * 120.00386 * 279.02013 * 12 11 9 14 14 O 1.21285 * 120.00067 * 99.01601 * 12 11 9 15 15 C 1.52991 * 117.52083 * 79.66141 * 11 9 8 16 16 C 1.52996 * 60.00200 * 107.48371 * 15 11 9 17 17 N 1.46901 * 109.47169 * 239.99998 * 2 1 3 18 18 C 1.46901 * 111.00018 * 84.99910 * 17 2 1 19 19 C 1.50700 * 109.47010 * 179.97438 * 18 17 2 20 20 O 1.21296 * 119.99639 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99895 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99982 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00042 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00026 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00440 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99923 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46834 * 60.00265 * 26 24 22 28 28 H 1.48503 * 109.47141 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47094 * 300.00145 * 26 24 22 30 30 H 1.08998 * 109.47067 * 60.00028 * 1 2 3 31 31 H 1.08997 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47122 * 300.00468 * 1 2 3 33 33 H 1.09000 * 109.47417 * 65.00346 * 4 2 1 34 34 H 1.08996 * 109.47351 * 304.99718 * 4 2 1 35 35 H 1.09004 * 109.47147 * 299.99355 * 7 5 4 36 36 H 1.09005 * 109.47686 * 60.00146 * 7 5 4 37 37 H 1.09010 * 109.46904 * 179.97438 * 7 5 4 38 38 H 0.97001 * 119.99569 * 24.99438 * 8 5 4 39 39 H 0.96997 * 119.99882 * 355.01593 * 13 12 11 40 40 H 0.96998 * 120.00241 * 174.74825 * 13 12 11 41 41 H 1.09005 * 117.50026 * 214.97220 * 15 11 9 42 42 H 1.08996 * 117.50053 * 359.97438 * 15 11 9 43 43 H 1.09001 * 117.49946 * 252.51134 * 16 15 11 44 44 H 1.08997 * 117.49832 * 107.49003 * 16 15 11 45 45 H 1.00902 * 110.99883 * 208.95740 * 17 2 1 46 46 H 1.08995 * 109.47357 * 300.00040 * 18 17 2 47 47 H 1.09004 * 109.46975 * 60.00086 * 18 17 2 48 48 H 0.96996 * 120.00013 * 359.97438 * 21 19 18 49 49 H 0.96998 * 120.00651 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4925 8 7 3.9480 0.7894 1.4925 9 6 5.1611 1.2136 1.0868 10 8 5.9699 0.4176 0.6588 11 6 5.5128 2.6769 1.1650 12 6 4.7221 3.5847 0.2586 13 7 5.0614 3.7020 -1.0405 14 8 3.7802 4.2098 0.6981 15 6 5.9333 3.2310 2.5277 16 6 6.9764 3.0389 1.4251 17 7 2.0197 -0.6925 -1.1994 18 6 2.0825 0.2226 -2.3469 19 6 2.5886 -0.5215 -3.5557 20 8 2.8689 -1.6985 -3.4698 21 7 2.7297 0.1208 -4.7321 22 6 3.1896 -0.5563 -5.8320 23 1 3.4392 -1.6043 -5.7556 24 6 3.3345 0.1057 -7.0449 25 7 3.0313 1.3810 -7.1378 26 14 3.9619 -0.8167 -8.5433 27 1 3.0408 -1.9390 -8.8551 28 1 4.0259 0.1085 -9.7032 29 1 5.3180 -1.3526 -8.2628 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.6545 -1.0592 3.4194 36 1 3.8001 -2.4819 2.3596 37 1 5.1715 -1.3616 2.5382 38 1 3.3284 1.4129 1.9028 39 1 5.8567 3.2595 -1.3758 40 1 4.5081 4.2257 -1.6409 41 1 5.6379 4.2522 2.7687 42 1 5.9552 2.5373 3.3681 43 1 7.6850 2.2186 1.5400 44 1 7.3674 3.9336 0.9407 45 1 2.9173 -1.1206 -1.0287 46 1 1.0872 0.6163 -2.5526 47 1 2.7589 1.0462 -2.1182 48 1 2.5052 1.0619 -4.8008 49 1 3.1322 1.8431 -7.9847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135348636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:13 Heat of formation + Delta-G solvation = -123.718324 kcal Electronic energy + Delta-G solvation = -30988.828470 eV Core-core repulsion = 26756.961039 eV Total energy + Delta-G solvation = -4231.867431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83085 -40.42192 -40.07283 -38.69025 -37.08673 -36.24534 -35.81539 -34.65699 -33.34807 -32.75787 -31.51584 -28.24346 -27.61755 -26.70419 -25.70852 -23.79741 -23.43905 -22.25230 -21.19985 -21.17480 -20.78560 -19.94488 -19.28232 -18.04842 -17.91383 -17.46355 -17.18933 -17.00484 -16.55945 -16.23732 -16.19567 -15.96133 -15.59106 -15.53861 -15.17895 -15.00409 -14.67883 -14.35958 -14.23842 -13.91280 -13.60420 -13.49803 -13.35260 -13.23198 -12.91465 -12.86328 -12.73708 -12.63350 -12.45722 -12.32710 -12.25345 -12.13009 -11.95137 -11.74277 -11.54539 -11.52529 -11.25244 -10.87398 -10.80185 -10.39072 -10.21674 -10.04177 -9.37553 -8.48416 -5.97426 1.10880 1.38049 1.40217 1.49425 1.51100 1.98481 2.00641 2.23573 2.27453 2.69164 2.88960 3.17983 3.43189 3.51113 3.60382 3.63526 3.77384 3.81162 3.83976 4.08170 4.22135 4.34357 4.37295 4.44234 4.50706 4.54145 4.59331 4.62276 4.74274 4.78572 4.83498 4.91748 4.96629 5.02369 5.07062 5.16834 5.26288 5.38483 5.42110 5.43161 5.68741 5.88401 6.09295 6.21494 6.35315 6.37876 6.57122 7.05122 7.09827 7.10330 7.51829 8.07511 8.68625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003361 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.627344 B = 8328.995397 C = 9618.770565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.039 0.961 4 C -0.118 4.118 5 C 0.135 3.865 6 H 0.055 0.945 7 C -0.153 4.153 8 N -0.704 5.704 9 C 0.556 3.444 10 O -0.562 6.562 11 C -0.216 4.216 12 C 0.563 3.437 13 N -0.834 5.834 14 O -0.564 6.564 15 C -0.111 4.111 16 C -0.125 4.125 17 N -0.672 5.672 18 C 0.070 3.930 19 C 0.436 3.564 20 O -0.621 6.621 21 N -0.569 5.569 22 C -0.336 4.336 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.412 0.588 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.339 0.661 46 H 0.099 0.901 47 H 0.048 0.952 48 H 0.395 0.605 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 7.107 22.301 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.156 4.156 5 C 0.031 3.969 6 H 0.073 0.927 7 C -0.211 4.211 8 N -0.355 5.355 9 C 0.341 3.659 10 O -0.440 6.440 11 C -0.223 4.223 12 C 0.346 3.654 13 N -0.397 5.397 14 O -0.442 6.442 15 C -0.148 4.148 16 C -0.162 4.162 17 N -0.307 5.307 18 C -0.062 4.062 19 C 0.224 3.776 20 O -0.508 6.508 21 N -0.206 5.206 22 C -0.466 4.466 23 H 0.095 0.905 24 C -0.209 4.209 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.249 0.751 39 H 0.243 0.757 40 H 0.244 0.756 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.129 0.871 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.117 0.883 47 H 0.066 0.934 48 H 0.229 0.771 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.170 5.954 22.137 23.026 hybrid contribution 0.818 0.815 -1.414 1.826 sum 2.989 6.769 20.722 22.004 Atomic orbital electron populations 1.21782 0.93404 1.02398 1.01843 1.21680 0.96741 0.95625 0.88825 0.94260 1.22072 0.92198 1.03400 0.97935 1.21101 0.95825 0.80793 0.99207 0.92661 1.22072 1.00817 1.00409 0.97812 1.46014 1.16215 1.11627 1.61676 1.19285 0.82085 0.87889 0.76662 1.90748 1.49839 1.56380 1.47050 1.21373 1.03384 0.92538 1.04964 1.19208 0.82922 0.80460 0.82784 1.43818 1.31554 1.54594 1.09708 1.90744 1.30325 1.47378 1.75766 1.23198 0.98686 1.03630 0.89299 1.23226 0.88037 1.04251 1.00731 1.60273 1.34273 1.32275 1.03832 1.21487 1.01480 0.93493 0.89776 1.20797 0.83418 0.88012 0.85403 1.90487 1.56602 1.18122 1.85555 1.41881 1.58138 1.12454 1.08142 1.19626 1.42389 0.95958 0.88604 0.90464 1.26009 0.97072 0.96614 1.01219 1.69657 1.48366 1.09613 1.28220 0.85016 0.78719 0.77902 0.76872 1.19762 1.19251 1.19728 0.93947 0.92250 0.90036 0.88688 0.87311 0.90116 0.90562 0.93783 0.75092 0.75704 0.75650 0.86190 0.85994 0.87061 0.85711 0.84100 0.88263 0.93367 0.77092 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.42 71.98 0.68 -2.22 16 2 C 0.08 1.90 2.59 44.92 0.12 2.01 16 3 H 0.04 0.96 7.28 -2.38 -0.02 0.95 16 4 C -0.12 -2.08 4.34 30.60 0.13 -1.95 16 5 C 0.14 2.84 2.44 44.99 0.11 2.95 16 6 H 0.06 1.61 5.80 -2.38 -0.01 1.60 16 7 C -0.15 -2.66 9.48 71.98 0.68 -1.98 16 8 N -0.70 -14.04 4.45 -442.54 -1.97 -16.01 16 9 C 0.56 13.43 7.02 87.66 0.62 14.05 16 10 O -0.56 -18.04 16.38 -3.04 -0.05 -18.09 16 11 C -0.22 -4.14 2.25 -53.68 -0.12 -4.26 16 12 C 0.56 12.53 7.24 87.66 0.63 13.17 16 13 N -0.83 -16.07 8.87 -173.53 -1.54 -17.61 16 14 O -0.56 -15.59 17.85 -3.05 -0.05 -15.64 16 15 C -0.11 -1.44 9.87 30.59 0.30 -1.14 16 16 C -0.13 -1.79 9.76 30.59 0.30 -1.49 16 17 N -0.67 -22.34 5.93 -495.56 -2.94 -25.28 16 18 C 0.07 2.62 5.97 85.56 0.51 3.13 16 19 C 0.44 21.77 7.82 87.66 0.69 22.46 16 20 O -0.62 -35.86 15.78 -3.08 -0.05 -35.90 16 21 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 22 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 25 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 26 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H 0.04 1.01 7.45 -2.39 -0.02 0.99 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.04 0.93 8.09 -2.38 -0.02 0.91 16 38 H 0.41 6.76 8.61 -92.71 -0.80 5.97 16 39 H 0.41 7.14 8.83 -92.71 -0.82 6.32 16 40 H 0.41 7.47 8.93 -92.71 -0.83 6.64 16 41 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.73 8.01 -2.39 -0.02 1.71 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.34 12.35 6.11 -89.69 -0.55 11.80 16 46 H 0.10 3.41 7.44 -2.39 -0.02 3.40 16 47 H 0.05 1.69 8.06 -2.38 -0.02 1.67 16 48 H 0.40 19.78 7.90 -92.71 -0.73 19.04 16 49 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -77.09 413.10 -2.68 -79.77 By element: Atomic # 1 Polarization: 60.98 SS G_CDS: -2.70 Total: 58.29 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 5.93 Total: 26.05 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -7.79 Total: -139.81 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -0.15 Total: -69.64 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -77.09 -2.68 -79.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135348636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.944 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds