Wall clock time and date at job start Wed Apr 1 2020 00:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.29717 * 2 1 4 4 C 1.52926 * 109.12557 * 240.50392 * 2 1 3 5 5 C 1.53352 * 108.66273 * 189.01675 * 4 2 1 6 6 H 1.08993 * 109.70336 * 307.79559 * 5 4 2 7 7 C 1.50697 * 109.67283 * 187.27578 * 5 4 2 8 8 O 1.21283 * 120.00521 * 0.76401 * 7 5 4 9 9 N 1.34784 * 119.99774 * 181.03507 * 7 5 4 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 5 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46990 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99849 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46842 * 179.97438 * 14 13 12 16 16 O 1.21291 * 119.99990 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99816 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00185 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99292 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00256 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99985 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47573 * 59.99882 * 22 20 18 24 24 H 1.48500 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47119 * 299.99639 * 22 20 18 26 26 C 1.53074 * 108.42158 * 67.54636 * 5 4 2 27 27 C 1.50179 * 109.89231 * 311.09942 * 26 5 4 28 28 O 1.21276 * 118.24996 * 197.60322 * 27 26 5 29 29 N 1.33364 * 123.50634 * 17.58262 * 27 26 5 30 30 H 1.08997 * 109.47320 * 300.41098 * 1 2 3 31 31 H 1.09002 * 109.47368 * 60.41599 * 1 2 3 32 32 H 1.09004 * 109.47382 * 180.41237 * 1 2 3 33 33 H 1.09004 * 109.59966 * 69.27484 * 4 2 1 34 34 H 1.08994 * 109.62869 * 308.78030 * 4 2 1 35 35 H 0.97005 * 119.99846 * 359.72750 * 9 7 5 36 36 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 37 37 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 38 38 H 1.09000 * 109.47195 * 299.99415 * 11 10 9 39 39 H 1.08994 * 109.47584 * 59.99634 * 11 10 9 40 40 H 1.09005 * 109.47033 * 299.99952 * 12 11 10 41 41 H 1.08999 * 109.47677 * 59.99180 * 12 11 10 42 42 H 1.00898 * 110.99582 * 303.95389 * 13 12 11 43 43 H 1.08999 * 109.47532 * 300.00173 * 14 13 12 44 44 H 1.09001 * 109.47554 * 60.00131 * 14 13 12 45 45 H 0.97003 * 120.00483 * 0.02562 * 17 15 14 46 46 H 0.97006 * 120.00333 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.40142 * 71.22520 * 26 5 4 48 48 H 1.08997 * 109.39770 * 191.05657 * 26 5 4 49 49 H 0.96990 * 117.94764 * 177.77738 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0310 -0.7114 -1.2576 5 6 3.5475 -0.9064 -1.1398 6 1 4.0236 0.0462 -0.9075 7 6 4.0925 -1.4425 -2.4385 8 8 3.3467 -1.6370 -3.3749 9 7 5.4079 -1.7111 -2.5576 10 6 5.9367 -2.2379 -3.8182 11 6 7.4457 -2.4544 -3.6873 12 6 7.9981 -3.0040 -5.0040 13 7 9.4471 -3.2112 -4.8786 14 6 10.0131 -3.7401 -6.1266 15 6 11.4977 -3.9387 -5.9603 16 8 12.0315 -3.6669 -4.9057 17 7 12.2320 -4.4194 -6.9832 18 6 13.5827 -4.5996 -6.8321 19 1 14.0581 -4.3567 -5.8932 20 6 14.3398 -5.0947 -7.8867 21 7 13.7613 -5.3897 -9.0292 22 14 16.1800 -5.3408 -7.6806 23 1 16.4303 -6.3024 -6.5769 24 1 16.7525 -5.8749 -8.9424 25 1 16.8204 -4.0402 -7.3587 26 6 3.8206 -1.9071 -0.0141 27 6 3.0479 -1.5185 1.2136 28 8 3.3843 -1.9932 2.2777 29 7 2.0117 -0.6791 1.1963 30 1 -0.3634 0.5202 0.8862 31 1 -0.3634 0.5074 -0.8937 32 1 -0.3634 -1.0277 0.0074 33 1 1.8075 -0.1042 -2.1348 34 1 1.5435 -1.6820 -1.3480 35 1 6.0044 -1.5556 -1.8086 36 1 5.4524 -3.1873 -4.0468 37 1 5.7395 -1.5269 -4.6203 38 1 7.9304 -1.5053 -3.4584 39 1 7.6426 -3.1656 -2.8852 40 1 7.5135 -3.9530 -5.2334 41 1 7.8012 -2.2924 -5.8059 42 1 9.9116 -2.3590 -4.6030 43 1 9.5427 -4.6945 -6.3632 44 1 9.8299 -3.0342 -6.9367 45 1 11.8051 -4.6372 -7.8265 46 1 14.2900 -5.7349 -9.7656 47 1 3.5155 -2.9036 -0.3336 48 1 4.8859 -1.9110 0.2163 49 1 1.5500 -0.5097 2.0322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161589294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:22 Heat of formation + Delta-G solvation = -159.055405 kcal Electronic energy + Delta-G solvation = -28076.122595 eV Core-core repulsion = 23842.722833 eV Total energy + Delta-G solvation = -4233.399762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79588 -40.44825 -40.14295 -37.95379 -37.52445 -36.10872 -35.63771 -34.54507 -33.28192 -32.28334 -31.99626 -28.66359 -28.18101 -26.75447 -25.47763 -23.98008 -23.25197 -22.56147 -21.30526 -21.00456 -20.24088 -19.89626 -18.40830 -17.99671 -17.78608 -17.41982 -17.22449 -16.83783 -16.61047 -16.38376 -16.21284 -15.94384 -15.64905 -15.47346 -15.16676 -15.08780 -14.66998 -14.54419 -14.30655 -14.10442 -13.61193 -13.54617 -13.33798 -13.18907 -13.10602 -12.84691 -12.70218 -12.58203 -12.42501 -12.40698 -12.39637 -12.11797 -12.08810 -11.91129 -11.82604 -11.49653 -11.37475 -10.65459 -10.34747 -10.12361 -10.09420 -10.01493 -9.32201 -8.46223 -5.95264 1.40512 1.42576 1.52738 1.53438 1.58603 2.05523 2.10505 2.26411 2.30285 2.95450 3.21161 3.37393 3.53534 3.55817 3.61189 3.72039 4.02607 4.03902 4.16740 4.17235 4.21372 4.28332 4.34639 4.44283 4.49840 4.58507 4.59514 4.61820 4.67481 4.72738 4.81413 4.85410 4.92501 5.05662 5.17760 5.18560 5.23725 5.34436 5.41016 5.44734 5.79598 5.89199 6.10565 6.30053 6.42373 6.52428 6.60326 7.12678 7.15515 7.21009 7.56460 8.11585 8.70865 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032156 B = 0.001315 C = 0.001274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.557482 B =21294.555103 C =21978.326878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.100 0.900 4 C -0.112 4.112 5 C -0.101 4.101 6 H 0.132 0.868 7 C 0.519 3.481 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.127 3.873 11 C -0.117 4.117 12 C 0.062 3.938 13 N -0.684 5.684 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.123 4.123 27 C 0.522 3.478 28 O -0.605 6.605 29 N -0.707 5.707 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.345 0.655 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.103 0.897 48 H 0.120 0.880 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.491 13.580 13.523 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.118 0.882 4 C -0.150 4.150 5 C -0.122 4.122 6 H 0.149 0.851 7 C 0.306 3.694 8 O -0.455 6.455 9 N -0.370 5.370 10 C 0.002 3.998 11 C -0.155 4.155 12 C -0.067 4.067 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.163 4.163 27 C 0.310 3.690 28 O -0.488 6.488 29 N -0.358 5.358 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.164 0.836 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.138 0.862 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -28.367 12.645 13.945 34.045 hybrid contribution 0.879 0.348 -0.528 1.083 sum -27.489 12.993 13.417 33.233 Atomic orbital electron populations 1.22157 0.92831 1.02946 1.04167 1.21181 0.95733 0.96662 0.83007 0.88205 1.21806 0.92490 1.02542 0.98168 1.21445 0.98587 1.01230 0.90970 0.85066 1.20779 0.81967 0.76983 0.89675 1.90721 1.58556 1.53965 1.42273 1.45985 1.08701 1.65657 1.16664 1.21189 0.93288 0.99145 0.86166 1.21600 0.93275 1.02474 0.98161 1.21917 0.86749 1.00975 0.97057 1.60043 1.04048 1.36436 1.31163 1.21529 0.90504 1.02262 0.92482 1.20912 0.90157 0.82403 0.84160 1.90485 1.74360 1.57097 1.29079 1.41934 1.07834 1.57314 1.13920 1.19652 0.84291 1.42563 1.00141 0.90274 1.26030 1.04728 0.96085 0.94285 1.69664 1.38585 1.44240 1.03589 0.84992 0.76796 0.78753 0.77818 1.19764 1.19491 1.19627 1.21633 1.02802 1.00715 0.91102 1.20276 0.80459 0.77806 0.90464 1.90781 1.68936 1.55838 1.33203 1.45731 1.31633 1.45227 1.13190 0.90801 0.89546 0.92646 0.88361 0.91333 0.74805 0.91944 0.91679 0.90363 0.90389 0.90410 0.94002 0.83590 0.87889 0.91503 0.76959 0.91282 0.87871 0.86195 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 9.38 71.98 0.68 0.25 16 2 C 0.14 0.59 3.68 45.11 0.17 0.75 16 3 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 4 C -0.11 -0.84 3.98 30.69 0.12 -0.72 16 5 C -0.10 -0.79 2.60 -11.40 -0.03 -0.82 16 6 H 0.13 0.45 8.13 -2.39 -0.02 0.43 16 7 C 0.52 7.27 7.14 87.65 0.63 7.89 16 8 O -0.58 -12.89 15.90 -3.04 -0.05 -12.94 16 9 N -0.72 -8.22 5.46 -463.06 -2.53 -10.75 16 10 C 0.13 1.82 5.67 86.38 0.49 2.31 16 11 C -0.12 -1.78 5.59 30.60 0.17 -1.61 16 12 C 0.06 1.25 5.68 86.30 0.49 1.74 16 13 N -0.68 -20.17 6.13 -517.92 -3.17 -23.35 16 14 C 0.06 2.15 6.17 85.56 0.53 2.68 16 15 C 0.44 20.58 7.82 87.66 0.69 21.26 16 16 O -0.62 -34.30 15.78 -3.06 -0.05 -34.35 16 17 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 18 C -0.34 -19.13 9.68 84.04 0.81 -18.31 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 22 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 C -0.12 -1.21 5.19 29.71 0.15 -1.05 16 27 C 0.52 7.69 7.71 87.71 0.68 8.37 16 28 O -0.61 -14.95 17.78 -3.02 -0.05 -15.00 16 29 N -0.71 -6.22 5.12 -446.63 -2.29 -8.51 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.10 0.76 7.89 -2.38 -0.02 0.75 16 34 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 35 H 0.42 2.73 8.18 -92.70 -0.76 1.97 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.35 10.55 8.43 -89.70 -0.76 9.79 16 43 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 46 H 0.28 14.02 8.31 -92.70 -0.77 13.24 16 47 H 0.10 1.14 8.09 -2.39 -0.02 1.12 16 48 H 0.12 0.91 7.93 -2.39 -0.02 0.89 16 49 H 0.40 3.15 8.67 -92.72 -0.80 2.35 16 Total: -1.00 -79.55 407.66 -3.47 -83.01 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -2.05 Total: 34.64 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.04 Total: 22.60 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -9.33 Total: -122.72 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -0.15 Total: -62.29 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -79.55 -3.47 -83.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161589294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.043 kcal (2) G-P(sol) polarization free energy of solvation -79.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds