Wall clock time and date at job start Wed Apr 1 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9 16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 N 1.46498 * 109.46850 * 179.97438 * 20 18 17 22 22 C 1.47321 * 126.69099 * 90.00059 * 21 20 18 23 23 C 1.51575 * 103.59144 * 179.97438 * 22 21 20 24 24 O 1.21242 * 127.15421 * 180.02562 * 23 22 21 25 25 N 1.34761 * 105.69271 * 0.02562 * 23 22 21 26 26 C 1.46497 * 124.18244 * 180.02562 * 25 23 22 27 27 C 1.33794 * 111.63879 * 359.76332 * 25 23 22 28 28 O 1.21541 * 123.77002 * 180.24888 * 27 25 23 29 29 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 31 31 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 32 32 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 33 33 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 43 43 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 44 44 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 45 45 H 1.09002 * 110.59356 * 298.49208 * 22 21 20 46 46 H 1.08994 * 110.59579 * 61.43410 * 22 21 20 47 47 H 1.09002 * 109.46966 * 359.97438 * 26 25 23 48 48 H 1.09002 * 109.46835 * 119.97524 * 26 25 23 49 49 H 1.09001 * 109.47477 * 239.97429 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.4617 -1.9278 4.5327 15 1 9.9815 -2.0100 6.9080 16 1 10.1818 -4.0673 5.6398 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 7 2.6987 0.2124 -4.7090 22 6 3.8372 1.0640 -5.0947 23 6 3.3253 1.8151 -6.3077 24 8 3.9254 2.6366 -6.9673 25 7 2.0646 1.3800 -6.5006 26 6 1.1882 1.8475 -7.5773 27 6 1.7142 0.4640 -5.5905 28 8 0.6268 -0.0783 -5.5618 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.7516 -1.7713 1.2058 33 1 1.6053 -0.2615 2.1370 34 1 3.8530 0.4372 1.3574 35 1 3.9994 -1.0727 0.4262 36 1 3.6401 -0.8755 3.4507 37 1 3.7865 -2.3850 2.5188 38 1 6.0345 -1.6850 1.7398 39 1 5.8874 -0.1758 2.6719 40 1 5.4606 -2.3487 4.4245 41 1 7.3646 -3.6493 6.8350 42 1 2.2492 -1.6318 -1.1524 43 1 3.6494 -1.1205 -3.3977 44 1 1.9780 -1.5510 -3.8323 45 1 4.0868 1.7574 -4.2915 46 1 4.7010 0.4535 -5.3578 47 1 1.7153 2.5877 -8.1793 48 1 0.9033 1.0039 -8.2061 49 1 0.2937 2.2988 -7.1478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176135103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:14 Heat of formation + Delta-G solvation = -100.941961 kcal Electronic energy + Delta-G solvation = -29056.375679 eV Core-core repulsion = 24825.495905 eV Total energy + Delta-G solvation = -4230.879774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.37667 -40.86217 -39.72410 -38.08377 -37.28802 -36.81729 -36.14811 -34.74958 -33.10823 -32.01021 -30.81974 -28.79935 -28.15967 -27.55860 -25.90370 -24.00138 -23.51389 -22.35111 -21.97299 -21.53331 -21.14592 -19.10881 -18.80521 -18.60094 -17.79724 -17.76055 -17.24245 -16.79599 -16.66483 -16.34009 -15.95346 -15.77053 -15.46920 -15.33460 -15.26135 -15.14173 -15.04460 -14.53069 -14.38964 -14.19463 -14.04730 -13.72106 -13.54423 -13.32777 -13.05364 -13.01752 -12.88711 -12.83655 -12.44161 -12.24467 -12.09422 -12.09279 -11.86596 -11.78099 -11.46727 -11.42010 -11.36501 -11.23744 -10.94324 -10.92878 -10.06589 -10.00110 -8.99098 -7.95309 -5.24148 0.52673 0.95303 1.48177 1.49022 1.59168 1.62312 1.78706 1.89835 2.38446 2.56539 3.00137 3.38547 3.61477 3.66742 3.80567 4.06438 4.09956 4.17657 4.18407 4.23420 4.34234 4.37713 4.38200 4.38544 4.45101 4.47267 4.63318 4.67249 4.68431 4.79626 4.81564 4.91191 4.95864 5.01755 5.06286 5.15198 5.22702 5.29118 5.34048 5.48750 5.49051 5.57565 5.62755 5.97219 6.25607 6.27980 6.58606 6.91712 7.28327 7.33646 8.11464 8.33581 9.28508 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.001781 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.733305 B =15719.539407 C =17146.202514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.294 1.294 16 H -0.291 1.291 17 N -0.708 5.708 18 C 0.489 3.511 19 O -0.581 6.581 20 C 0.132 3.868 21 N -0.605 5.605 22 C 0.070 3.930 23 C 0.525 3.475 24 O -0.501 6.501 25 N -0.583 5.583 26 C 0.083 3.917 27 C 0.699 3.301 28 O -0.578 6.578 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.012 0.988 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.418 0.582 43 H 0.169 0.831 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 5.138 -26.357 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.141 4.141 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.379 4.379 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.221 1.221 16 H -0.218 1.218 17 N -0.362 5.362 18 C 0.275 3.725 19 O -0.460 6.460 20 C 0.008 3.992 21 N -0.342 5.342 22 C -0.054 4.054 23 C 0.314 3.686 24 O -0.373 6.373 25 N -0.329 5.329 26 C -0.057 4.057 27 C 0.402 3.598 28 O -0.454 6.454 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.255 0.745 43 H 0.186 0.814 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.185 0.815 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.441 6.128 -26.752 30.560 hybrid contribution 0.542 -0.336 0.856 1.067 sum -12.899 5.792 -25.896 29.505 Atomic orbital electron populations 1.22115 0.95103 1.02722 1.01700 1.20879 0.93855 0.96758 0.84264 0.91526 1.21832 0.95017 1.01977 0.96600 1.21412 0.95439 1.00108 0.97101 1.21614 0.93772 1.00993 0.98798 1.20874 0.94206 0.94225 0.88524 1.42660 1.04492 1.65355 1.26761 1.19709 0.85399 1.27473 1.05323 0.90676 1.25595 1.02144 1.01350 0.97892 1.69818 1.34595 1.42053 1.15600 0.85059 0.80008 0.77051 0.77559 1.18993 1.22107 1.21835 1.45989 1.66411 1.14897 1.08856 1.21715 0.77356 0.87468 0.85976 1.90717 1.51604 1.18205 1.85507 1.21497 1.07843 0.89714 0.80188 1.47113 1.14156 1.43928 1.28983 1.22760 0.91615 0.95467 0.95606 1.21248 0.80796 0.80888 0.85638 1.90819 1.62290 1.32099 1.52094 1.46373 1.16898 1.39275 1.30320 1.21980 0.93929 1.01793 0.88047 1.15979 0.84221 0.79625 0.80011 1.90953 1.22864 1.55655 1.75973 0.91113 0.90916 0.94556 0.89618 0.90151 0.92750 0.90632 0.92924 0.91787 0.95908 0.97013 0.79500 0.93982 0.74452 0.81394 0.84832 0.84979 0.81528 0.87873 0.89324 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.15 2.31 2.57 44.99 0.12 2.43 16 3 H 0.07 1.38 7.58 -2.38 -0.02 1.36 16 4 C -0.12 -1.72 4.75 30.59 0.15 -1.58 16 5 C -0.10 -1.99 5.10 30.60 0.16 -1.83 16 6 C -0.11 -3.19 5.33 30.60 0.16 -3.02 16 7 C 0.15 5.63 6.26 86.38 0.54 6.17 16 8 N -0.75 -37.91 5.60 -343.47 -1.92 -39.84 16 9 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 12 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 13 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 N -0.71 -8.55 4.53 -442.54 -2.00 -10.56 16 18 C 0.49 7.72 7.86 87.66 0.69 8.41 16 19 O -0.58 -15.01 16.09 -3.03 -0.05 -15.06 16 20 C 0.13 1.06 6.63 85.63 0.57 1.63 16 21 N -0.61 -7.85 2.51 -846.24 -2.12 -9.97 16 22 C 0.07 0.62 7.66 85.76 0.66 1.28 16 23 C 0.52 8.11 8.32 87.94 0.73 8.84 16 24 O -0.50 -10.43 17.51 -2.91 -0.05 -10.48 16 25 N -0.58 -9.71 3.00 -796.66 -2.39 -12.11 16 26 C 0.08 1.03 10.76 127.77 1.37 2.41 16 27 C 0.70 13.63 8.31 179.44 1.49 15.12 16 28 O -0.58 -15.23 17.34 -3.84 -0.07 -15.30 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.25 7.75 -2.39 -0.02 1.23 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 41 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 42 H 0.42 2.45 8.60 -92.71 -0.80 1.66 16 43 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.13 0.83 8.02 -2.39 -0.02 0.82 16 45 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.17 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.10 1.07 7.64 -2.39 -0.02 1.05 16 48 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -85.00 414.58 1.78 -83.23 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.55 Total: 20.08 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 8.62 Total: 21.09 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -8.16 Total: -131.25 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.17 Total: -40.83 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -85.00 1.78 -83.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176135103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.713 kcal (2) G-P(sol) polarization free energy of solvation -85.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds