Wall clock time and date at job start Wed Apr 1 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49692 * 2 1 4 4 C 1.53624 * 109.43313 * 120.22232 * 2 1 3 5 5 N 1.46928 * 108.54470 * 174.72185 * 4 2 1 6 6 C 1.34779 * 120.62691 * 126.37119 * 5 4 2 7 7 O 1.21288 * 119.99877 * 359.72520 * 6 5 4 8 8 C 1.50696 * 119.99844 * 179.72196 * 6 5 4 9 9 C 1.47206 * 109.46794 * 180.02562 * 8 6 5 10 10 C 6.86813 * 141.22728 * 83.51569 * 2 1 3 11 11 C 8.14133 * 136.97932 * 79.41135 * 2 1 3 12 12 C 1.39531 * 120.13920 * 224.23597 * 11 10 9 13 13 C 1.37977 * 119.85697 * 179.97438 * 12 11 10 14 14 C 1.38352 * 120.13849 * 0.02562 * 13 12 11 15 15 C 1.38343 * 120.28442 * 0.27584 * 14 13 12 16 16 C 1.37970 * 120.14641 * 359.44544 * 15 14 13 17 17 C 1.46921 * 118.74245 * 306.09951 * 5 4 2 18 18 C 1.53196 * 108.77701 * 53.85513 * 17 5 4 19 19 C 1.53041 * 109.31402 * 305.36891 * 18 17 5 20 20 H 1.09000 * 109.46118 * 301.34175 * 19 18 17 21 21 C 1.53001 * 109.45841 * 181.36977 * 19 18 17 22 22 N 1.46491 * 109.47096 * 65.00183 * 21 19 18 23 23 C 1.36936 * 119.99813 * 180.02562 * 22 21 19 24 24 H 1.07993 * 120.00188 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99749 * 180.02562 * 23 22 21 26 26 N 1.31614 * 120.00357 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99690 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47190 * 59.99865 * 27 25 23 29 29 H 1.48507 * 109.47134 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47028 * 299.99377 * 27 25 23 31 31 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47122 * 300.06511 * 1 2 3 33 33 H 1.09010 * 109.46932 * 60.06412 * 1 2 3 34 34 H 1.09007 * 109.73803 * 54.98695 * 4 2 1 35 35 H 1.08993 * 109.66561 * 294.42109 * 4 2 1 36 36 H 1.08995 * 109.47527 * 59.99830 * 8 6 5 37 37 H 1.08999 * 109.47224 * 299.99620 * 8 6 5 38 38 H 1.07998 * 120.07384 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.93056 * 179.97438 * 13 12 11 40 40 H 1.08002 * 119.85272 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.92209 * 179.71838 * 15 14 13 42 42 H 1.07995 * 120.07647 * 180.27417 * 16 15 14 43 43 H 1.08998 * 109.58943 * 173.64867 * 17 5 4 44 44 H 1.09001 * 109.58423 * 293.93159 * 17 5 4 45 45 H 1.09003 * 109.49026 * 65.31890 * 18 17 5 46 46 H 1.09001 * 109.49779 * 185.38248 * 18 17 5 47 47 H 1.09005 * 109.46700 * 184.99872 * 21 19 18 48 48 H 1.09002 * 109.46870 * 304.99586 * 21 19 18 49 49 H 0.97003 * 120.00367 * 359.97438 * 22 21 19 50 50 H 0.96998 * 120.00271 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7292 1.2518 5 7 3.5046 -0.8295 1.1693 6 6 4.2811 -0.3870 2.1782 7 8 3.7730 0.1040 3.1640 8 6 5.7805 -0.5026 2.0814 9 6 6.3947 0.0468 3.3012 10 6 6.8846 0.4857 4.2735 11 6 7.4822 1.0207 5.4599 12 6 6.6782 1.4613 6.5118 13 6 7.2601 1.9753 7.6524 14 6 8.6376 2.0546 7.7542 15 6 9.4401 1.6251 6.7123 16 6 8.8708 1.1039 5.5687 17 6 4.1053 -1.4266 -0.0311 18 6 3.5709 -0.6946 -1.2662 19 6 2.0408 -0.7227 -1.2486 20 1 1.6967 -1.7569 -1.2359 21 6 1.5038 -0.0222 -2.4983 22 7 1.8918 -0.7823 -3.6890 23 6 1.5210 -0.3438 -4.9321 24 1 0.9422 0.5622 -5.0347 25 6 1.8882 -1.0644 -6.0603 26 7 2.5931 -2.1688 -5.9353 27 14 1.3817 -0.4665 -7.7561 28 1 1.9480 0.8855 -7.9938 29 1 1.8948 -1.4057 -8.7857 30 1 -0.0997 -0.4040 -7.8369 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.6084 -1.7287 1.2980 35 1 1.7630 -0.1669 2.1431 36 1 6.1327 0.0555 1.2139 37 1 6.0581 -1.5513 1.9759 38 1 5.6028 1.3996 6.4337 39 1 6.6390 2.3171 8.4671 40 1 9.0882 2.4581 8.6490 41 1 10.5146 1.6940 6.7962 42 1 9.4985 0.7649 4.7579 43 1 5.1896 -1.3246 0.0134 44 1 3.8396 -2.4823 -0.0861 45 1 3.9160 0.3392 -1.2539 46 1 3.9339 -1.1887 -2.1674 47 1 0.4167 0.0366 -2.4430 48 1 1.9195 0.9837 -2.5579 49 1 2.4119 -1.5959 -3.5969 50 1 2.8494 -2.6725 -6.7236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185743398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:34 Heat of formation + Delta-G solvation = 20.917823 kcal Electronic energy + Delta-G solvation = -27768.841403 eV Core-core repulsion = 23954.095129 eV Total energy + Delta-G solvation = -3814.746274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.41137 -40.05239 -39.28583 -36.56341 -35.44472 -34.99199 -33.46954 -32.49276 -31.97728 -31.90897 -29.74149 -28.33148 -27.29576 -25.49652 -24.01555 -23.67654 -23.45021 -22.73562 -21.26499 -20.30721 -19.13425 -19.06121 -18.18623 -17.38993 -16.86880 -16.77157 -16.63225 -15.96583 -15.77550 -15.65051 -15.48840 -15.25466 -15.03596 -14.83950 -14.55480 -14.37572 -14.32507 -14.10033 -14.04519 -13.84390 -13.54338 -13.10301 -12.92981 -12.90269 -12.76590 -12.65118 -12.35161 -12.26995 -12.21483 -11.95026 -11.87613 -11.74414 -11.62211 -11.49525 -11.38290 -11.16895 -10.88745 -10.70868 -9.94498 -9.67915 -9.42484 -8.93763 -7.92669 -5.19739 -0.06884 0.41921 1.33364 1.48783 1.50621 1.50935 1.56799 1.92496 2.11826 2.57860 2.98436 3.02464 3.40691 3.51533 3.71402 3.78943 3.88300 4.02001 4.03934 4.04157 4.18873 4.25300 4.27732 4.34930 4.41680 4.42518 4.47998 4.54119 4.55156 4.62376 4.65571 4.68526 4.77931 4.81440 4.88944 5.02029 5.05729 5.08159 5.11635 5.15729 5.21251 5.31505 5.37426 5.45798 5.49770 5.52137 5.53614 5.55192 5.61727 5.99608 6.30020 6.30889 6.50709 7.06243 7.37376 8.14086 8.38669 9.30197 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.001705 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.806784 B =16413.629304 C =17239.121658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.516 3.484 7 O -0.584 6.584 8 C -0.022 4.022 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.011 4.011 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.119 4.119 16 C -0.107 4.107 17 C 0.107 3.893 18 C -0.123 4.123 19 C -0.079 4.079 20 H 0.070 0.930 21 C 0.156 3.844 22 N -0.740 5.740 23 C -0.247 4.247 24 H 0.070 0.930 25 C -0.070 4.070 26 N -0.965 5.965 27 Si 0.968 3.032 28 H -0.281 1.281 29 H -0.294 1.294 30 H -0.280 1.280 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.009 0.991 49 H 0.377 0.623 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 4.104 25.984 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.002 4.002 5 N -0.336 5.336 6 C 0.305 3.695 7 O -0.465 6.465 8 C -0.060 4.060 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.011 4.011 12 C -0.133 4.133 13 C -0.140 4.140 14 C -0.129 4.129 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.014 4.014 18 C -0.161 4.161 19 C -0.098 4.098 20 H 0.088 0.912 21 C 0.029 3.971 22 N -0.383 5.383 23 C -0.379 4.379 24 H 0.087 0.913 25 C -0.263 4.263 26 N -0.615 5.615 27 Si 0.798 3.202 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.207 1.207 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.027 0.973 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.218 4.469 26.372 29.005 hybrid contribution -0.481 -0.034 -1.462 1.539 sum 10.737 4.435 24.910 27.486 Atomic orbital electron populations 1.21809 0.93710 1.02586 1.02174 1.21420 0.96681 0.99121 0.93401 0.91787 1.21748 0.79046 1.01297 0.98105 1.48190 1.06992 1.60146 1.18259 1.20786 0.89836 0.76864 0.82009 1.90693 1.76322 1.46520 1.32921 1.18879 0.89024 1.05423 0.92693 1.21866 0.98252 0.99256 0.95929 1.19692 1.00435 1.00965 0.94733 1.16185 0.93694 1.01189 0.90005 1.21379 0.99778 0.98616 0.93554 1.21407 0.96126 0.99031 0.97411 1.21700 0.93351 0.98130 0.99723 1.21470 1.01658 0.97899 0.92680 1.21449 0.92548 0.99114 0.99419 1.22031 0.99757 0.97663 0.81961 1.21849 0.95065 1.01142 0.98033 1.21226 0.95727 0.99615 0.93255 0.91172 1.20888 0.96678 0.93603 0.85900 1.42512 1.65292 1.29065 1.01423 1.19553 1.26985 1.05975 0.85341 0.91251 1.25458 1.01666 0.97991 1.01184 1.69774 1.44247 1.18341 1.29155 0.85294 0.77832 0.77125 0.79990 1.20684 1.22031 1.20665 0.91971 0.91493 0.92567 0.90096 0.90160 0.83603 0.82942 0.86645 0.83415 0.82684 0.82690 0.84697 0.86515 0.89487 0.92178 0.91158 0.95855 0.97279 0.79068 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.82 71.98 0.63 -2.71 16 2 C -0.09 -2.14 2.43 -10.57 -0.03 -2.17 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.12 2.79 5.75 86.51 0.50 3.28 16 5 N -0.60 -13.28 2.97 -818.06 -2.43 -15.70 16 6 C 0.52 12.74 7.68 87.66 0.67 13.42 16 7 O -0.58 -19.71 15.44 -3.05 -0.05 -19.76 16 8 C -0.02 -0.39 4.54 28.04 0.13 -0.26 16 9 C -0.15 -3.77 12.58 31.13 0.39 -3.38 16 10 C -0.16 -4.17 13.24 30.02 0.40 -3.77 16 11 C -0.01 -0.25 5.72 -21.41 -0.12 -0.37 16 12 C -0.12 -2.42 9.75 22.52 0.22 -2.20 16 13 C -0.12 -1.80 10.03 22.24 0.22 -1.58 16 14 C -0.11 -1.29 10.04 22.32 0.22 -1.07 16 15 C -0.12 -1.49 10.03 22.23 0.22 -1.27 16 16 C -0.11 -1.87 9.75 22.52 0.22 -1.65 16 17 C 0.11 1.98 6.34 86.36 0.55 2.53 16 18 C -0.12 -3.20 5.25 30.67 0.16 -3.04 16 19 C -0.08 -2.31 1.73 -10.76 -0.02 -2.32 16 20 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 21 C 0.16 5.98 5.41 86.38 0.47 6.44 16 22 N -0.74 -36.11 5.32 -343.47 -1.83 -37.94 16 23 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 24 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 25 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 26 N -0.96 -57.21 13.06 21.65 0.28 -56.92 16 27 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 30 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.44 6.29 -2.38 -0.01 1.42 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.08 2.06 7.00 -2.39 -0.02 2.05 16 36 H 0.15 1.83 7.69 -2.39 -0.02 1.81 16 37 H 0.15 1.64 7.94 -2.39 -0.02 1.62 16 38 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.12 1.41 5.93 -2.39 -0.01 1.39 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 47 H 0.02 0.92 6.14 -2.38 -0.01 0.90 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.38 19.14 6.85 -92.71 -0.63 18.50 16 50 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -74.44 408.80 4.46 -69.98 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.30 Total: 29.16 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 6.15 Total: -16.33 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.97 Total: -110.57 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.44 4.46 -69.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185743398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.896 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds