Wall clock time and date at job start Wed Apr 1 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52551 * 2 1 4 4 C 1.53195 * 109.49895 * 120.07755 * 2 1 3 5 5 N 1.46924 * 108.77302 * 65.31538 * 4 2 1 6 6 C 1.34774 * 120.63040 * 233.62820 * 5 4 2 7 7 O 1.21289 * 120.00076 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.47200 * 109.46918 * 180.02562 * 8 6 5 10 10 C 6.86755 * 70.86114 * 138.81699 * 2 1 3 11 11 C 8.14064 * 68.70506 * 133.97949 * 2 1 3 12 12 C 1.39539 * 120.14448 * 13.80184 * 11 10 9 13 13 C 1.37973 * 119.85982 * 179.78769 * 12 11 10 14 14 C 1.38342 * 120.14002 * 0.46779 * 13 12 11 15 15 C 1.38346 * 120.28605 * 359.78536 * 14 13 12 16 16 C 1.37971 * 120.14383 * 359.97438 * 15 14 13 17 17 C 1.46925 * 118.73966 * 53.61411 * 5 4 2 18 18 C 1.53192 * 108.77313 * 306.38559 * 17 5 4 19 19 C 1.53039 * 109.31131 * 54.63670 * 18 17 5 20 20 H 1.09001 * 109.46007 * 58.64375 * 19 18 17 21 21 C 1.53004 * 109.45895 * 178.61251 * 19 18 17 22 22 N 1.46499 * 109.47198 * 295.00122 * 21 19 18 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.08996 * 109.46979 * 180.08504 * 1 2 3 32 32 H 1.08999 * 109.46796 * 300.08370 * 1 2 3 33 33 H 1.09000 * 109.47008 * 60.08554 * 1 2 3 34 34 H 1.09000 * 109.58854 * 305.53079 * 4 2 1 35 35 H 1.08996 * 109.70310 * 185.17305 * 4 2 1 36 36 H 1.09001 * 109.46879 * 300.00088 * 8 6 5 37 37 H 1.08994 * 109.46624 * 60.00502 * 8 6 5 38 38 H 1.08007 * 120.07021 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.93056 * 180.20868 * 13 12 11 40 40 H 1.07991 * 119.85987 * 179.76328 * 14 13 12 41 41 H 1.08007 * 119.92933 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.07846 * 179.97438 * 16 15 14 43 43 H 1.09005 * 109.58760 * 186.60248 * 17 5 4 44 44 H 1.08996 * 109.70744 * 66.24341 * 17 5 4 45 45 H 1.08998 * 109.50072 * 294.68866 * 18 17 5 46 46 H 1.08995 * 109.52572 * 174.60197 * 18 17 5 47 47 H 1.09009 * 109.46730 * 174.99909 * 21 19 18 48 48 H 1.08998 * 109.46846 * 55.00454 * 21 19 18 49 49 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 50 50 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9741 -2.7217 2.1780 7 8 0.6808 -2.0787 3.1638 8 6 0.5808 -4.1733 2.0809 9 6 -0.1442 -4.5678 3.2996 10 6 -0.7216 -4.8829 4.2721 11 6 -1.4264 -5.2669 5.4580 12 6 -2.5413 -4.5398 5.8769 13 6 -3.2187 -4.9177 7.0180 14 6 -2.7889 -6.0090 7.7517 15 6 -1.6812 -6.7309 7.3446 16 6 -0.9980 -6.3664 6.2027 17 6 2.0141 -2.9040 -0.0306 18 6 1.5030 -2.1559 -1.2659 19 6 2.0408 -0.7232 -1.2483 20 1 3.1306 -0.7445 -1.2350 21 6 1.5607 0.0168 -2.4984 22 7 2.1480 -0.6032 -3.6887 23 6 1.8642 -0.1036 -4.9317 24 1 1.2038 0.7448 -5.0348 25 6 2.4253 -0.6874 -6.0591 26 7 3.2298 -1.7216 -5.9334 27 14 2.0375 -0.0063 -7.7547 28 1 2.4734 1.4113 -7.8303 29 1 2.7556 -0.8009 -8.7834 30 1 0.5749 -0.0882 -7.9985 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.6008 -0.2730 2.1389 35 1 3.1274 -0.6463 1.3006 36 1 -0.0624 -4.3181 1.2129 37 1 1.4762 -4.7859 1.9759 38 1 -2.8756 -3.6854 5.3070 39 1 -4.0838 -4.3578 7.3414 40 1 -3.3202 -6.2984 8.6462 41 1 -1.3510 -7.5821 7.9216 42 1 -0.1331 -6.9305 5.8862 43 1 1.5554 -3.8919 0.0140 44 1 3.0977 -3.0065 -0.0878 45 1 0.4133 -2.1355 -1.2539 46 1 1.8476 -2.6627 -2.1672 47 1 1.8686 1.0611 -2.4431 48 1 0.4738 -0.0388 -2.5585 49 1 2.7414 -1.3649 -3.5960 50 1 3.6216 -2.1297 -6.7213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185743401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:44 Heat of formation + Delta-G solvation = 41.480318 kcal Electronic energy + Delta-G solvation = -27990.199707 eV Core-core repulsion = 24176.345090 eV Total energy + Delta-G solvation = -3813.854617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.49743 -39.42644 -38.19221 -34.99513 -34.58237 -33.47741 -32.05765 -31.51172 -31.29817 -30.34603 -28.84079 -27.05703 -26.32757 -23.74614 -23.23065 -23.00608 -22.83888 -21.52639 -20.19826 -18.49406 -18.25956 -17.48786 -16.88285 -16.59853 -15.92516 -15.88812 -15.31902 -15.06853 -14.84551 -14.50854 -14.20399 -13.99541 -13.84118 -13.78991 -13.73850 -13.60634 -13.35161 -13.04820 -12.78948 -12.54085 -12.45077 -12.18756 -11.78680 -11.60701 -11.58931 -11.37744 -11.13974 -11.06170 -10.93761 -10.77476 -10.39666 -10.33821 -10.24912 -10.18565 -10.01253 -9.76363 -9.64755 -9.32085 -8.87002 -8.73667 -8.62134 -6.92180 -5.78339 -3.06149 0.61630 1.04188 2.31259 2.50031 2.62477 3.04738 3.42934 3.47581 3.48297 3.69551 3.79994 4.43416 4.57541 4.60366 4.60752 4.73256 4.78153 4.92150 4.98045 4.98735 5.04897 5.10028 5.11950 5.16910 5.23552 5.23966 5.43973 5.52565 5.60384 5.66708 5.68803 5.72236 5.78117 5.84082 5.86533 6.03327 6.06194 6.08108 6.13023 6.17715 6.19514 6.27892 6.36266 6.44802 6.46654 6.58831 6.64706 6.80085 6.92856 7.25835 7.39860 7.68609 8.05756 8.41255 9.52379 10.10598 10.45216 11.44527 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.001696 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.993695 B =16504.025436 C =16813.331098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.518 3.482 7 O -0.538 6.538 8 C -0.027 4.027 9 C -0.132 4.132 10 C -0.136 4.136 11 C 0.023 3.977 12 C -0.095 4.095 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.099 4.099 17 C 0.102 3.898 18 C -0.129 4.129 19 C -0.088 4.088 20 H 0.072 0.928 21 C 0.158 3.842 22 N -0.731 5.731 23 C -0.239 4.239 24 H 0.068 0.932 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.017 0.983 48 H 0.022 0.978 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -8.884 24.875 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.415 6.415 8 C -0.066 4.066 9 C -0.133 4.133 10 C -0.136 4.136 11 C 0.023 3.977 12 C -0.113 4.113 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.138 4.138 16 C -0.117 4.117 17 C -0.020 4.020 18 C -0.167 4.167 19 C -0.107 4.107 20 H 0.090 0.910 21 C 0.030 3.970 22 N -0.376 5.376 23 C -0.370 4.370 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.951 -8.439 25.258 27.792 hybrid contribution 0.113 0.111 -1.190 1.200 sum -7.838 -8.328 24.068 26.647 Atomic orbital electron populations 1.21855 0.94921 1.01913 1.01475 1.21472 0.96638 0.99505 0.94174 0.90022 1.21687 0.99441 0.80083 0.99258 1.48083 1.55754 1.11812 1.18086 1.20239 0.77804 0.88679 0.82739 1.90717 1.54563 1.65133 1.31072 1.18697 1.00581 0.94347 0.92929 1.21202 0.98017 0.99005 0.95056 1.18985 0.99551 1.01003 0.94033 1.15891 0.94756 0.96042 0.90972 1.21292 0.94245 0.99146 0.96615 1.21109 1.00084 0.97397 0.95128 1.21276 0.96770 0.95559 0.99740 1.21086 0.95958 1.00164 0.96628 1.21244 0.99739 0.95941 0.94777 1.21939 1.00859 0.94848 0.84370 1.21982 1.01434 0.96117 0.97136 1.21302 1.00281 0.94647 0.94508 0.91000 1.20718 0.95926 0.94662 0.85658 1.42366 1.56879 1.37489 1.00855 1.19186 1.22985 1.10896 0.83916 0.91360 1.24713 1.00055 0.98407 0.97784 1.69640 1.35560 1.24450 1.28674 0.86279 0.77620 0.78089 0.84266 1.21321 1.21704 1.21328 0.92661 0.93368 0.91928 0.89218 0.91455 0.86150 0.86303 0.85472 0.85500 0.85786 0.85551 0.85608 0.89922 0.90793 0.91288 0.89266 0.96517 0.96072 0.78319 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.38 37.16 0.31 -1.55 16 2 C -0.10 -1.24 2.72 -90.50 -0.25 -1.48 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.40 5.83 -3.71 -0.02 1.38 16 5 N -0.60 -6.97 2.41 -172.77 -0.42 -7.38 16 6 C 0.52 6.58 7.68 -10.98 -0.08 6.49 16 7 O -0.54 -8.93 15.44 5.55 0.09 -8.85 16 8 C -0.03 -0.26 4.54 -30.67 -0.14 -0.40 16 9 C -0.13 -1.63 12.58 -37.12 -0.47 -2.10 16 10 C -0.14 -1.72 13.24 -38.84 -0.51 -2.24 16 11 C 0.02 0.26 5.72 -107.00 -0.61 -0.35 16 12 C -0.09 -0.94 9.75 -39.19 -0.38 -1.32 16 13 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 14 C -0.12 -0.81 10.04 -39.50 -0.40 -1.20 16 15 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 16 C -0.10 -0.90 9.75 -39.19 -0.38 -1.28 16 17 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 18 C -0.13 -1.72 4.91 -26.61 -0.13 -1.85 16 19 C -0.09 -1.30 1.96 -90.58 -0.18 -1.47 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 21 C 0.16 3.01 5.18 -4.04 -0.02 2.99 16 22 N -0.73 -17.70 5.32 -59.90 -0.32 -18.02 16 23 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 27 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 0.92 7.69 -51.93 -0.40 0.52 16 37 H 0.12 0.83 7.94 -51.93 -0.41 0.41 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 46 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 47 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 48 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 49 H 0.38 9.60 6.85 -40.82 -0.28 9.32 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -33.62 404.76 -10.84 -44.46 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.66 Total: 6.50 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -4.33 Total: -13.13 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.01 Total: -52.18 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.62 -10.84 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185743401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.942 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds