Wall clock time and date at job start Wed Apr 1 2020 00:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52551 * 2 1 4 4 C 1.53195 * 109.49895 * 120.07755 * 2 1 3 5 5 N 1.46924 * 108.77302 * 65.31538 * 4 2 1 6 6 C 1.34774 * 120.63040 * 233.62820 * 5 4 2 7 7 O 1.21289 * 120.00076 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.47200 * 109.46918 * 180.02562 * 8 6 5 10 10 C 6.86755 * 70.86114 * 138.81699 * 2 1 3 11 11 C 8.14064 * 68.70506 * 133.97949 * 2 1 3 12 12 C 1.39539 * 120.14448 * 13.80184 * 11 10 9 13 13 C 1.37973 * 119.85982 * 179.78769 * 12 11 10 14 14 C 1.38342 * 120.14002 * 0.46779 * 13 12 11 15 15 C 1.38346 * 120.28605 * 359.78536 * 14 13 12 16 16 C 1.37971 * 120.14383 * 359.97438 * 15 14 13 17 17 C 1.46925 * 118.73966 * 53.61411 * 5 4 2 18 18 C 1.53192 * 108.77313 * 306.38559 * 17 5 4 19 19 C 1.53039 * 109.31131 * 54.63670 * 18 17 5 20 20 H 1.09001 * 109.46007 * 58.64375 * 19 18 17 21 21 C 1.53004 * 109.45895 * 178.61251 * 19 18 17 22 22 N 1.46499 * 109.47198 * 295.00122 * 21 19 18 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.08996 * 109.46979 * 180.08504 * 1 2 3 32 32 H 1.08999 * 109.46796 * 300.08370 * 1 2 3 33 33 H 1.09000 * 109.47008 * 60.08554 * 1 2 3 34 34 H 1.09000 * 109.58854 * 305.53079 * 4 2 1 35 35 H 1.08996 * 109.70310 * 185.17305 * 4 2 1 36 36 H 1.09001 * 109.46879 * 300.00088 * 8 6 5 37 37 H 1.08994 * 109.46624 * 60.00502 * 8 6 5 38 38 H 1.08007 * 120.07021 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.93056 * 180.20868 * 13 12 11 40 40 H 1.07991 * 119.85987 * 179.76328 * 14 13 12 41 41 H 1.08007 * 119.92933 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.07846 * 179.97438 * 16 15 14 43 43 H 1.09005 * 109.58760 * 186.60248 * 17 5 4 44 44 H 1.08996 * 109.70744 * 66.24341 * 17 5 4 45 45 H 1.08998 * 109.50072 * 294.68866 * 18 17 5 46 46 H 1.08995 * 109.52572 * 174.60197 * 18 17 5 47 47 H 1.09009 * 109.46730 * 174.99909 * 21 19 18 48 48 H 1.08998 * 109.46846 * 55.00454 * 21 19 18 49 49 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 50 50 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9741 -2.7217 2.1780 7 8 0.6808 -2.0787 3.1638 8 6 0.5808 -4.1733 2.0809 9 6 -0.1442 -4.5678 3.2996 10 6 -0.7216 -4.8829 4.2721 11 6 -1.4264 -5.2669 5.4580 12 6 -2.5413 -4.5398 5.8769 13 6 -3.2187 -4.9177 7.0180 14 6 -2.7889 -6.0090 7.7517 15 6 -1.6812 -6.7309 7.3446 16 6 -0.9980 -6.3664 6.2027 17 6 2.0141 -2.9040 -0.0306 18 6 1.5030 -2.1559 -1.2659 19 6 2.0408 -0.7232 -1.2483 20 1 3.1306 -0.7445 -1.2350 21 6 1.5607 0.0168 -2.4984 22 7 2.1480 -0.6032 -3.6887 23 6 1.8642 -0.1036 -4.9317 24 1 1.2038 0.7448 -5.0348 25 6 2.4253 -0.6874 -6.0591 26 7 3.2298 -1.7216 -5.9334 27 14 2.0375 -0.0063 -7.7547 28 1 2.4734 1.4113 -7.8303 29 1 2.7556 -0.8009 -8.7834 30 1 0.5749 -0.0882 -7.9985 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.6008 -0.2730 2.1389 35 1 3.1274 -0.6463 1.3006 36 1 -0.0624 -4.3181 1.2129 37 1 1.4762 -4.7859 1.9759 38 1 -2.8756 -3.6854 5.3070 39 1 -4.0838 -4.3578 7.3414 40 1 -3.3202 -6.2984 8.6462 41 1 -1.3510 -7.5821 7.9216 42 1 -0.1331 -6.9305 5.8862 43 1 1.5554 -3.8919 0.0140 44 1 3.0977 -3.0065 -0.0878 45 1 0.4133 -2.1355 -1.2539 46 1 1.8476 -2.6627 -2.1672 47 1 1.8686 1.0611 -2.4431 48 1 0.4738 -0.0388 -2.5585 49 1 2.7414 -1.3649 -3.5960 50 1 3.6216 -2.1297 -6.7213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185743401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:43 Heat of formation + Delta-G solvation = 24.208734 kcal Electronic energy + Delta-G solvation = -27990.948659 eV Core-core repulsion = 24176.345090 eV Total energy + Delta-G solvation = -3814.603569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.51436 -40.05025 -39.33430 -36.55407 -35.42106 -34.84886 -33.33194 -32.39528 -31.92239 -31.90832 -29.67427 -28.46587 -27.43012 -25.45540 -24.13135 -23.96006 -23.45080 -22.91952 -21.23837 -19.65799 -19.08809 -18.93509 -18.21070 -17.33038 -16.88655 -16.76895 -16.64363 -16.01876 -15.90565 -15.60163 -15.40550 -15.36767 -15.06705 -14.85726 -14.55976 -14.37752 -14.32319 -14.17389 -13.95527 -13.78208 -13.62149 -13.41892 -12.96129 -12.77542 -12.67764 -12.43542 -12.33703 -12.22828 -12.21328 -12.02044 -11.93122 -11.88868 -11.54360 -11.38475 -11.20726 -11.14346 -10.87873 -10.74532 -9.94252 -9.63545 -9.43441 -8.93905 -7.92589 -5.19639 -0.07545 0.42176 1.42759 1.48842 1.50675 1.56524 1.56892 1.78359 2.18852 2.57997 2.97782 3.03878 3.40850 3.55071 3.75122 3.80895 3.87276 4.01251 4.03988 4.09832 4.19594 4.24764 4.28077 4.35712 4.40993 4.41429 4.47958 4.51296 4.56078 4.62821 4.67272 4.74775 4.79269 4.84575 4.89869 5.00657 5.05482 5.08010 5.10800 5.20765 5.21489 5.24263 5.35787 5.45963 5.51093 5.51891 5.53587 5.56645 5.65175 5.99733 6.30423 6.33462 6.51893 7.09805 7.37527 8.14451 8.38848 9.30276 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.001696 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.993695 B =16504.025436 C =16813.331098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.088 0.912 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.517 3.483 7 O -0.583 6.583 8 C -0.023 4.023 9 C -0.152 4.152 10 C -0.159 4.159 11 C -0.011 4.011 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.107 3.893 18 C -0.124 4.124 19 C -0.079 4.079 20 H 0.069 0.931 21 C 0.158 3.842 22 N -0.740 5.740 23 C -0.246 4.246 24 H 0.070 0.930 25 C -0.071 4.071 26 N -0.965 5.965 27 Si 0.968 3.032 28 H -0.281 1.281 29 H -0.294 1.294 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.115 0.885 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.012 0.988 48 H 0.019 0.981 49 H 0.377 0.623 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 -9.881 26.114 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.003 4.003 5 N -0.332 5.332 6 C 0.306 3.694 7 O -0.464 6.464 8 C -0.061 4.061 9 C -0.152 4.152 10 C -0.159 4.159 11 C -0.011 4.011 12 C -0.133 4.133 13 C -0.140 4.140 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.127 4.127 17 C -0.014 4.014 18 C -0.162 4.162 19 C -0.098 4.098 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.383 5.383 23 C -0.378 4.378 24 H 0.088 0.912 25 C -0.263 4.263 26 N -0.615 5.615 27 Si 0.798 3.202 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.206 1.206 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.137 0.863 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.151 0.849 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.030 0.970 48 H 0.037 0.963 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.432 -9.419 26.501 29.361 hybrid contribution 0.199 0.457 -1.490 1.571 sum -8.233 -8.962 25.010 27.814 Atomic orbital electron populations 1.21803 0.95087 1.01617 1.01220 1.21392 0.96348 0.99750 0.93422 0.89403 1.21634 1.00122 0.80390 0.98140 1.48116 1.55167 1.11685 1.18190 1.20737 0.76929 0.89692 0.82049 1.90701 1.56339 1.66435 1.32881 1.18883 1.02129 0.92445 0.92662 1.21866 0.98306 0.99154 0.95899 1.19684 1.00143 1.01287 0.94784 1.16187 0.95787 0.97609 0.91472 1.21401 0.94713 0.99357 0.97794 1.21414 1.00418 0.97851 0.94290 1.21697 0.96413 0.94595 1.00244 1.21463 0.95606 1.00744 0.95949 1.21447 1.00315 0.95554 0.95354 1.22014 1.01828 0.95516 0.82080 1.21879 1.01145 0.95283 0.97895 1.21182 1.00036 0.95345 0.93187 0.91282 1.20847 0.95470 0.94611 0.85933 1.42526 1.56909 1.37437 1.01470 1.19556 1.22291 1.10594 0.85389 0.91246 1.25460 1.00577 0.99101 1.01200 1.69781 1.36828 1.25746 1.29169 0.85292 0.77492 0.77456 0.79990 1.20707 1.22045 1.20643 0.92987 0.92942 0.92792 0.90171 0.90122 0.83733 0.83019 0.86266 0.83322 0.82710 0.82767 0.84896 0.86652 0.89551 0.91649 0.91393 0.97046 0.96288 0.79063 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.38 71.98 0.60 -2.92 16 2 C -0.09 -2.17 2.72 -10.71 -0.03 -2.19 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.12 2.71 5.83 86.36 0.50 3.21 16 5 N -0.60 -12.80 2.41 -818.90 -1.97 -14.77 16 6 C 0.52 12.51 7.68 87.66 0.67 13.19 16 7 O -0.58 -19.45 15.44 -3.06 -0.05 -19.50 16 8 C -0.02 -0.40 4.54 28.04 0.13 -0.27 16 9 C -0.15 -3.72 12.58 31.12 0.39 -3.33 16 10 C -0.16 -4.17 13.24 30.01 0.40 -3.77 16 11 C -0.01 -0.24 5.72 -21.41 -0.12 -0.36 16 12 C -0.11 -2.33 9.75 22.52 0.22 -2.11 16 13 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 14 C -0.11 -1.30 10.04 22.32 0.22 -1.07 16 15 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 16 C -0.11 -1.93 9.75 22.52 0.22 -1.71 16 17 C 0.11 1.94 6.34 86.36 0.55 2.49 16 18 C -0.12 -3.17 4.91 30.67 0.15 -3.02 16 19 C -0.08 -2.25 1.96 -10.77 -0.02 -2.27 16 20 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 21 C 0.16 6.01 5.18 86.38 0.45 6.46 16 22 N -0.74 -36.05 5.32 -343.44 -1.83 -37.88 16 23 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 24 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 26 N -0.96 -57.21 13.06 21.65 0.28 -56.93 16 27 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 30 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 31 H 0.05 1.33 5.97 -2.39 -0.01 1.32 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.43 6.58 -2.39 -0.02 1.42 16 34 H 0.08 2.03 7.00 -2.39 -0.02 2.01 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.15 1.81 7.69 -2.39 -0.02 1.79 16 37 H 0.15 1.62 7.94 -2.39 -0.02 1.60 16 38 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.16 0.82 8.06 -2.92 -0.02 0.80 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.12 1.37 5.93 -2.38 -0.01 1.36 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.72 6.34 -2.39 -0.02 1.70 16 46 H 0.07 2.07 7.15 -2.39 -0.02 2.06 16 47 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 48 H 0.02 0.75 6.74 -2.39 -0.02 0.73 16 49 H 0.38 19.11 6.85 -92.71 -0.63 18.47 16 50 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -74.26 404.76 4.86 -69.40 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.31 Total: 28.90 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 6.09 Total: -16.74 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -3.52 Total: -109.58 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.26 4.86 -69.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185743401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.609 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds