Wall clock time and date at job start Wed Apr 1 2020 00:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47406 * 2 1 4 4 O 1.21289 * 119.99873 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00149 * 179.97438 * 3 2 1 6 6 C 1.46507 * 119.99817 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.46649 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00328 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99258 * 180.02562 * 7 6 5 10 10 C 1.46922 * 120.63589 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.77421 * 126.36829 * 10 9 7 12 12 C 1.53042 * 109.31489 * 54.63715 * 11 10 9 13 13 C 1.53048 * 109.53665 * 298.63586 * 12 11 10 14 14 H 1.08996 * 109.52505 * 301.39688 * 13 12 11 15 15 N 1.46895 * 109.49493 * 181.31311 * 13 12 11 16 16 C 1.46906 * 110.99789 * 155.16054 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47151 * 90.00176 * 24 22 20 26 26 H 1.48498 * 109.47184 * 210.00131 * 24 22 20 27 27 H 1.48501 * 109.47470 * 330.00337 * 24 22 20 28 28 C 1.46931 * 120.62559 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47177 * 60.00048 * 1 2 3 30 30 H 1.08994 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47043 * 300.00357 * 1 2 3 32 32 H 1.09003 * 109.47043 * 239.99643 * 2 1 3 33 33 H 1.08999 * 109.47177 * 119.99952 * 2 1 3 34 34 H 0.96998 * 119.99961 * 0.02562 * 5 3 2 35 35 H 1.09002 * 109.47010 * 60.00597 * 6 5 3 36 36 H 1.08999 * 109.47246 * 300.00249 * 6 5 3 37 37 H 1.08993 * 109.59002 * 246.15378 * 10 9 7 38 38 H 1.09000 * 109.58230 * 6.44220 * 10 9 7 39 39 H 1.09000 * 109.50070 * 174.58758 * 11 10 9 40 40 H 1.08998 * 109.50005 * 294.65480 * 11 10 9 41 41 H 1.08991 * 109.46462 * 178.61749 * 12 11 10 42 42 H 1.08995 * 109.45688 * 58.65065 * 12 11 10 43 43 H 1.00902 * 111.00273 * 279.11577 * 15 13 12 44 44 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 45 45 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 46 46 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58700 * 113.84496 * 28 9 7 49 49 H 1.09005 * 109.70478 * 353.48536 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3529 3.0482 0.0001 8 8 5.9592 1.9978 0.0001 9 7 6.0267 4.2154 0.0001 10 6 5.3062 5.4958 0.0007 11 6 5.8143 6.3470 1.1686 12 6 7.3357 6.4820 1.0723 13 6 7.9795 5.0968 1.1681 14 1 7.6959 4.6277 2.1102 15 7 9.4411 5.2303 1.1072 16 6 10.1013 4.0919 1.7600 17 6 11.5963 4.2632 1.6772 18 8 12.0656 5.2380 1.1287 19 7 12.4118 3.3333 2.2125 20 6 13.7719 3.4894 2.1376 21 1 14.1897 4.3573 1.6493 22 6 14.6126 2.5309 2.6901 23 7 14.1041 1.4750 3.2847 24 14 16.4656 2.7432 2.5874 25 1 16.9449 3.4908 3.7777 26 1 17.1153 1.4085 2.5465 27 1 16.8099 3.4992 1.3565 28 6 7.4959 4.2315 -0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9878 0.9297 0.0005 35 1 3.4821 3.5626 0.8895 36 1 3.4829 3.5616 -0.8905 37 1 5.4884 6.0181 -0.9385 38 1 4.2377 5.3137 0.1162 39 1 5.3578 7.3358 1.1238 40 1 5.5502 5.8667 2.1108 41 1 7.6972 7.1076 1.8883 42 1 7.5999 6.9401 0.1192 43 1 9.7555 5.3326 0.1538 44 1 9.7979 4.0468 2.8059 45 1 9.8135 3.1682 1.2580 46 1 12.0365 2.5539 2.6515 47 1 14.6911 0.8058 3.6700 48 1 7.8565 4.6509 -0.9396 49 1 7.8746 3.2160 0.1158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207683457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:49 Heat of formation + Delta-G solvation = -141.107909 kcal Electronic energy + Delta-G solvation = -29259.219601 eV Core-core repulsion = 25026.598101 eV Total energy + Delta-G solvation = -4232.621500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66068 -40.61005 -40.15350 -38.88686 -36.45314 -35.81069 -35.56800 -33.72666 -33.48289 -33.24608 -31.34452 -29.39658 -27.81146 -26.32671 -25.84469 -24.64564 -23.44087 -21.89706 -21.42850 -21.12679 -20.23633 -19.88449 -18.72814 -17.92847 -17.84748 -17.30561 -17.15150 -16.85490 -16.50049 -16.36905 -16.05390 -16.03490 -15.51717 -15.33808 -15.29430 -14.97480 -14.69494 -14.44832 -14.26941 -14.02513 -13.88324 -13.69856 -13.48610 -13.43708 -13.21720 -13.14181 -12.86394 -12.62861 -12.43857 -12.36906 -12.13264 -12.02355 -11.93282 -11.88278 -11.63614 -11.52586 -11.12033 -11.01589 -10.38544 -10.28056 -10.04891 -9.98731 -9.29360 -8.48355 -5.97693 1.34754 1.37168 1.40949 1.53987 1.58926 1.59555 2.01627 2.26442 2.29750 2.86282 3.18413 3.24384 3.45830 3.76261 3.78056 3.88703 3.98572 4.04174 4.20533 4.20792 4.24569 4.27503 4.29030 4.29832 4.33577 4.50367 4.51217 4.67662 4.71355 4.74019 4.77636 4.90733 5.01484 5.06966 5.07308 5.20389 5.26544 5.31317 5.38538 5.39264 5.41546 5.85787 6.05153 6.19898 6.32988 6.42598 6.56879 6.89136 7.09897 7.14658 7.52903 8.07490 8.69057 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.001930 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.644160 B =14501.195401 C =16050.785130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.511 3.489 4 O -0.580 6.580 5 N -0.721 5.721 6 C 0.105 3.895 7 C 0.507 3.493 8 O -0.576 6.576 9 N -0.598 5.598 10 C 0.097 3.903 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.081 3.919 14 H 0.075 0.925 15 N -0.665 5.665 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.621 6.621 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.086 3.914 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.347 0.653 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.078 0.922 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.573 0.781 -6.022 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.460 6.460 5 N -0.376 5.376 6 C -0.022 4.022 7 C 0.296 3.704 8 O -0.456 6.456 9 N -0.331 5.331 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.029 4.029 14 H 0.093 0.907 15 N -0.297 5.297 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.039 4.039 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.167 0.833 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.342 1.788 -5.734 27.994 hybrid contribution 1.357 -1.418 -0.320 1.989 sum -25.985 0.370 -6.054 26.684 Atomic orbital electron populations 1.21536 0.93109 1.02668 1.02095 1.21705 0.98373 0.91427 1.06517 1.21406 0.81094 0.93162 0.74330 1.90690 1.56062 1.47885 1.51363 1.45899 1.07846 1.08452 1.75380 1.21140 0.89167 0.86035 1.05813 1.20902 0.90581 0.83424 0.75520 1.90706 1.70645 1.32259 1.52016 1.48077 1.06371 1.06736 1.71875 1.22188 0.97362 0.82385 1.00476 1.21906 0.94563 1.01680 0.98341 1.21495 0.94968 0.94649 1.03218 1.22014 0.86168 0.97164 0.97578 0.90658 1.60296 1.04450 1.41218 1.23698 1.21562 0.90080 0.93523 1.01626 1.20781 0.89661 0.83966 0.83013 1.90488 1.78155 1.32674 1.49400 1.41947 1.06128 1.21824 1.51082 1.19698 0.82331 1.07943 1.36507 0.90118 1.26088 1.05038 0.94593 0.95665 1.69680 1.37962 1.10988 1.37528 0.84895 0.76538 0.77888 0.78809 1.19573 1.19558 1.19653 1.22390 0.80150 1.01516 0.99800 0.93207 0.89868 0.93262 0.86744 0.86830 0.74661 0.87134 0.87039 0.89107 0.87241 0.87564 0.91495 0.91385 0.91108 0.83341 0.88131 0.92267 0.77086 0.91269 0.90391 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 71.98 0.66 -0.81 16 2 C -0.14 -1.36 6.42 29.85 0.19 -1.17 16 3 C 0.51 8.45 7.83 87.66 0.69 9.14 16 4 O -0.58 -13.61 15.98 -3.06 -0.05 -13.66 16 5 N -0.72 -11.12 5.53 -466.76 -2.58 -13.70 16 6 C 0.11 1.51 4.50 85.63 0.39 1.90 16 7 C 0.51 9.85 7.77 87.66 0.68 10.53 16 8 O -0.58 -15.71 15.08 -3.03 -0.05 -15.76 16 9 N -0.60 -10.03 2.97 -818.82 -2.43 -12.46 16 10 C 0.10 0.92 6.34 86.36 0.55 1.47 16 11 C -0.13 -1.31 6.08 30.67 0.19 -1.12 16 12 C -0.11 -1.77 5.49 30.62 0.17 -1.61 16 13 C 0.08 1.81 2.62 45.01 0.12 1.93 16 14 H 0.08 1.78 7.80 -2.39 -0.02 1.76 16 15 N -0.67 -20.30 5.88 -495.10 -2.91 -23.21 16 16 C 0.06 2.27 5.97 85.56 0.51 2.78 16 17 C 0.44 21.12 7.82 87.66 0.69 21.81 16 18 O -0.62 -34.42 15.78 -3.08 -0.05 -34.47 16 19 N -0.57 -29.95 5.29 -306.98 -1.62 -31.57 16 20 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 24 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 C 0.09 1.84 5.69 86.37 0.49 2.33 16 29 H 0.05 0.65 8.10 -2.39 -0.02 0.64 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 6.26 7.44 -92.71 -0.69 5.57 16 35 H 0.11 1.36 7.69 -2.39 -0.02 1.34 16 36 H 0.11 1.33 7.94 -2.39 -0.02 1.31 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.59 5.93 -2.39 -0.01 0.58 16 39 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.35 10.99 8.12 -89.69 -0.73 10.26 16 44 H 0.10 3.26 8.06 -2.39 -0.02 3.25 16 45 H 0.06 1.93 7.56 -2.38 -0.02 1.91 16 46 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 47 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.08 1.57 8.05 -2.38 -0.02 1.55 16 49 H 0.07 1.85 6.48 -2.38 -0.02 1.83 16 Total: -1.00 -77.11 401.09 -1.94 -79.05 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -1.16 Total: 42.17 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.59 Total: 28.42 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -9.26 Total: -131.03 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -0.14 Total: -63.88 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -77.11 -1.94 -79.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207683457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.062 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds