Wall clock time and date at job start Wed Apr 1 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47183 * 2 1 4 4 O 1.21276 * 119.99668 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99849 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46723 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00049 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99541 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00212 * 359.97438 * 9 7 6 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 6 12 12 C 1.52996 * 109.47041 * 270.00095 * 11 9 7 13 13 H 1.09002 * 112.95341 * 285.33011 * 12 11 9 14 14 C 1.53941 * 113.75723 * 153.68970 * 12 11 9 15 15 C 1.53940 * 86.33802 * 221.95783 * 14 12 11 16 16 N 1.47957 * 113.76271 * 56.98076 * 12 11 9 17 17 C 1.46896 * 110.99994 * 251.90165 * 16 12 11 18 18 C 1.50699 * 109.47156 * 169.99763 * 17 16 12 19 19 O 1.21290 * 120.00312 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99902 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99839 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99978 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99875 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00181 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00025 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47063 * 60.00159 * 25 23 21 27 27 H 1.48497 * 109.47015 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46944 * 300.00116 * 25 23 21 29 29 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46845 * 299.99601 * 1 2 3 31 31 H 1.09000 * 109.47186 * 59.99678 * 1 2 3 32 32 H 1.09004 * 109.47175 * 240.00253 * 2 1 3 33 33 H 1.09000 * 109.47186 * 120.00322 * 2 1 3 34 34 H 0.97000 * 119.99766 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.47027 * 60.00659 * 6 5 3 36 36 H 1.08996 * 109.46881 * 299.99838 * 6 5 3 37 37 H 1.09002 * 109.47391 * 270.00122 * 10 9 7 38 38 H 1.09001 * 109.46813 * 150.00179 * 10 9 7 39 39 H 1.09004 * 109.47041 * 30.00306 * 10 9 7 40 40 H 1.09002 * 109.47278 * 30.00038 * 11 9 7 41 41 H 1.09006 * 109.46998 * 149.99560 * 11 9 7 42 42 H 1.09001 * 113.73490 * 336.31423 * 14 12 11 43 43 H 1.08998 * 113.73515 * 107.49888 * 14 12 11 44 44 H 1.08998 * 113.76069 * 138.03458 * 15 14 12 45 45 H 1.08992 * 113.75756 * 269.29245 * 15 14 12 46 46 H 1.08999 * 109.47175 * 289.99629 * 17 16 12 47 47 H 1.09005 * 109.47433 * 49.99571 * 17 16 12 48 48 H 0.97000 * 120.00198 * 0.02562 * 20 18 17 49 49 H 0.96993 * 120.00289 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3528 3.0483 0.0010 8 8 5.9591 1.9980 0.0000 9 7 6.0266 4.2155 0.0019 10 6 5.2941 5.4842 0.0026 11 6 7.4916 4.2155 0.0024 12 6 8.0012 4.2145 1.4450 13 1 7.8925 5.1822 1.9349 14 6 9.3986 3.5899 1.6087 15 6 8.8393 2.9122 2.8727 16 7 7.5039 3.0786 2.2521 17 6 6.5145 3.5282 3.2404 18 6 5.8535 2.3295 3.8707 19 8 6.1748 1.2106 3.5299 20 7 4.9055 2.5006 4.8132 21 6 4.3038 1.4101 5.3862 22 1 4.5899 0.4140 5.0827 23 6 3.3260 1.5866 6.3576 24 7 2.9775 2.7988 6.7266 25 14 2.5067 0.1007 7.1389 26 1 3.5340 -0.7342 7.8116 27 1 1.5060 0.5553 8.1375 28 1 1.8284 -0.7000 6.0882 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9878 0.9298 0.0005 35 1 3.4822 3.5618 0.8911 36 1 3.4827 3.5623 -0.8889 37 1 5.1127 5.7996 -1.0249 38 1 5.8831 6.2435 0.5171 39 1 4.3415 5.3535 0.5161 40 1 7.8552 3.3259 -0.5119 41 1 7.8551 5.1058 -0.5108 42 1 9.6620 2.8900 0.8157 43 1 10.1839 4.3184 1.8106 44 1 9.1458 1.8723 2.9857 45 1 8.9769 3.4972 3.7820 46 1 7.0124 4.1159 4.0116 47 1 5.7604 4.1411 2.7466 48 1 4.6483 3.3954 5.0856 49 1 2.2947 2.9220 7.4043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231225425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:48 Heat of formation + Delta-G solvation = -63.012277 kcal Electronic energy + Delta-G solvation = -31614.927961 eV Core-core repulsion = 27385.692942 eV Total energy + Delta-G solvation = -4229.235019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.46719 -39.64439 -38.79224 -37.60893 -35.46797 -34.24423 -33.81350 -32.66403 -31.28679 -30.68329 -29.50649 -27.67128 -26.35330 -25.67306 -24.09688 -23.61723 -22.92158 -20.18017 -19.58930 -19.28959 -19.10688 -17.82866 -17.46650 -16.60834 -16.30423 -16.07988 -15.76908 -15.57182 -15.48962 -15.10501 -14.75200 -14.47066 -14.12874 -13.85364 -13.71606 -13.55353 -13.34868 -12.95600 -12.88657 -12.62717 -12.41951 -12.30542 -12.21034 -12.15745 -11.68423 -11.64249 -11.54225 -11.43875 -11.19682 -11.04527 -10.96764 -10.78323 -10.54159 -10.40142 -10.14863 -9.73397 -9.63210 -9.41836 -8.96686 -8.82686 -8.39488 -8.03087 -7.88141 -6.35184 -3.75377 2.72753 2.84378 2.87858 3.23492 3.28556 3.32823 3.48138 3.97321 4.01586 4.26748 4.51469 4.57592 4.80642 4.89759 4.97877 5.09384 5.10061 5.18066 5.20608 5.24273 5.26872 5.27679 5.36322 5.43054 5.47401 5.55955 5.60291 5.69373 5.71318 5.74513 5.79981 5.88330 5.88633 6.03398 6.04688 6.29189 6.30150 6.34874 6.44700 6.51885 6.74219 7.29109 7.40160 7.60603 7.68612 8.12805 8.30633 8.40587 8.70141 9.25843 9.62303 10.16079 10.82978 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006949 B = 0.005348 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4028.324494 B = 5234.625931 C = 8219.424228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 C 0.517 3.483 4 O -0.549 6.549 5 N -0.715 5.715 6 C 0.104 3.896 7 C 0.510 3.490 8 O -0.494 6.494 9 N -0.616 5.616 10 C 0.074 3.926 11 C 0.141 3.859 12 C 0.003 3.997 13 H 0.074 0.926 14 C -0.134 4.134 15 C 0.008 3.992 16 N -0.422 5.422 17 C 0.013 3.987 18 C 0.448 3.552 19 O -0.565 6.565 20 N -0.570 5.570 21 C -0.295 4.295 22 H 0.100 0.900 23 C 0.022 3.978 24 N -0.905 5.905 25 Si 0.928 3.072 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.414 0.586 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.389 0.611 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 6.496 -14.810 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.184 4.184 3 C 0.304 3.696 4 O -0.426 6.426 5 N -0.370 5.370 6 C -0.024 4.024 7 C 0.296 3.704 8 O -0.366 6.366 9 N -0.352 5.352 10 C -0.069 4.069 11 C 0.018 3.982 12 C -0.109 4.109 13 H 0.091 0.909 14 C -0.172 4.172 15 C -0.121 4.121 16 N -0.144 5.144 17 C -0.119 4.119 18 C 0.233 3.767 19 O -0.447 6.447 20 N -0.208 5.208 21 C -0.424 4.424 22 H 0.118 0.882 23 C -0.179 4.179 24 N -0.546 5.546 25 Si 0.755 3.245 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.222 0.778 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.241 5.301 -15.214 16.943 hybrid contribution -0.083 0.591 1.414 1.535 sum 5.159 5.892 -13.800 15.867 Atomic orbital electron populations 1.21515 0.93072 1.01438 1.03238 1.21613 0.98500 0.93601 1.04705 1.20748 0.81534 0.92077 0.75234 1.90671 1.55383 1.46595 1.49982 1.45724 1.07716 1.08143 1.75391 1.21026 0.91615 0.85869 1.03863 1.20323 0.89369 0.83958 0.76713 1.90759 1.69215 1.30198 1.46469 1.47576 1.06521 1.05839 1.75230 1.21850 0.97572 0.85711 1.01793 1.21359 0.78963 1.02884 0.94977 1.23959 0.95360 0.94998 0.96538 0.90852 1.23317 0.95126 0.99608 0.99172 1.23871 0.90570 1.02213 0.95402 1.68522 1.03663 1.27429 1.14804 1.22453 0.97107 0.97098 0.95290 1.19671 0.83746 0.89951 0.83336 1.90539 1.65322 1.24976 1.63910 1.41862 1.34499 1.09442 1.35014 1.19595 1.16813 0.88484 1.17530 0.88200 1.25212 0.97524 0.97724 0.97488 1.69597 1.32249 1.20662 1.32140 0.85968 0.78815 0.80965 0.78776 1.20004 1.21003 1.19940 0.92181 0.91794 0.92256 0.89033 0.88319 0.74822 0.88824 0.89196 0.92460 0.90993 0.90848 0.89206 0.90450 0.89046 0.91302 0.89186 0.91862 0.93089 0.90490 0.77840 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.20 37.16 0.34 -1.31 16 2 C -0.14 -1.84 6.42 -27.88 -0.18 -2.02 16 3 C 0.52 8.34 7.83 -10.98 -0.09 8.25 16 4 O -0.55 -10.39 15.98 5.56 0.09 -10.30 16 5 N -0.71 -11.25 5.53 -61.47 -0.34 -11.59 16 6 C 0.10 1.52 4.71 -5.19 -0.02 1.49 16 7 C 0.51 7.73 7.28 -10.98 -0.08 7.65 16 8 O -0.49 -9.28 14.69 5.56 0.08 -9.20 16 9 N -0.62 -7.24 2.83 -181.57 -0.51 -7.75 16 10 C 0.07 0.61 10.24 59.85 0.61 1.23 16 11 C 0.14 1.53 5.59 -4.04 -0.02 1.50 16 12 C 0.00 0.03 3.55 -66.66 -0.24 -0.21 16 13 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 14 C -0.13 -1.48 7.84 -25.78 -0.20 -1.68 16 15 C 0.01 0.12 7.96 -2.64 -0.02 0.10 16 16 N -0.42 -7.11 4.37 -231.13 -1.01 -8.12 16 17 C 0.01 0.24 5.28 -4.98 -0.03 0.21 16 18 C 0.45 10.99 7.83 -10.99 -0.09 10.90 16 19 O -0.57 -16.00 16.01 5.55 0.09 -15.91 16 20 N -0.57 -14.89 5.29 -10.96 -0.06 -14.95 16 21 C -0.29 -8.42 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.22 13.05 55.50 0.72 -24.50 16 25 Si 0.93 21.67 29.55 -169.99 -5.02 16.64 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.41 6.60 7.44 -40.82 -0.30 6.29 16 35 H 0.09 1.47 7.40 -51.93 -0.38 1.09 16 36 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 39 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 40 H 0.09 1.13 7.15 -51.93 -0.37 0.76 16 41 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16 46 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 47 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 48 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 49 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 407.42 15.07 6.14 6.14 Total: -1.00 -36.85 407.42 -7.95 -44.80 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -7.88 Total: 16.69 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -0.25 Total: 18.05 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -1.20 Total: -66.91 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: 0.26 Total: -35.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.85 -7.95 -44.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231225425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.213 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds