Wall clock time and date at job start Wed Apr 1 2020 00:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47183 * 2 1 4 4 O 1.21276 * 119.99668 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99849 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46723 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00049 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99541 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00212 * 359.97438 * 9 7 6 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 6 12 12 C 1.52996 * 109.47041 * 270.00095 * 11 9 7 13 13 H 1.09002 * 112.95341 * 285.33011 * 12 11 9 14 14 C 1.53941 * 113.75723 * 153.68970 * 12 11 9 15 15 C 1.53940 * 86.33802 * 221.95783 * 14 12 11 16 16 N 1.47957 * 113.76271 * 56.98076 * 12 11 9 17 17 C 1.46896 * 110.99994 * 251.90165 * 16 12 11 18 18 C 1.50699 * 109.47156 * 169.99763 * 17 16 12 19 19 O 1.21290 * 120.00312 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99902 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99839 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99978 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99875 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00181 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00025 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47063 * 60.00159 * 25 23 21 27 27 H 1.48497 * 109.47015 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46944 * 300.00116 * 25 23 21 29 29 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46845 * 299.99601 * 1 2 3 31 31 H 1.09000 * 109.47186 * 59.99678 * 1 2 3 32 32 H 1.09004 * 109.47175 * 240.00253 * 2 1 3 33 33 H 1.09000 * 109.47186 * 120.00322 * 2 1 3 34 34 H 0.97000 * 119.99766 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.47027 * 60.00659 * 6 5 3 36 36 H 1.08996 * 109.46881 * 299.99838 * 6 5 3 37 37 H 1.09002 * 109.47391 * 270.00122 * 10 9 7 38 38 H 1.09001 * 109.46813 * 150.00179 * 10 9 7 39 39 H 1.09004 * 109.47041 * 30.00306 * 10 9 7 40 40 H 1.09002 * 109.47278 * 30.00038 * 11 9 7 41 41 H 1.09006 * 109.46998 * 149.99560 * 11 9 7 42 42 H 1.09001 * 113.73490 * 336.31423 * 14 12 11 43 43 H 1.08998 * 113.73515 * 107.49888 * 14 12 11 44 44 H 1.08998 * 113.76069 * 138.03458 * 15 14 12 45 45 H 1.08992 * 113.75756 * 269.29245 * 15 14 12 46 46 H 1.08999 * 109.47175 * 289.99629 * 17 16 12 47 47 H 1.09005 * 109.47433 * 49.99571 * 17 16 12 48 48 H 0.97000 * 120.00198 * 0.02562 * 20 18 17 49 49 H 0.96993 * 120.00289 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3528 3.0483 0.0010 8 8 5.9591 1.9980 0.0000 9 7 6.0266 4.2155 0.0019 10 6 5.2941 5.4842 0.0026 11 6 7.4916 4.2155 0.0024 12 6 8.0012 4.2145 1.4450 13 1 7.8925 5.1822 1.9349 14 6 9.3986 3.5899 1.6087 15 6 8.8393 2.9122 2.8727 16 7 7.5039 3.0786 2.2521 17 6 6.5145 3.5282 3.2404 18 6 5.8535 2.3295 3.8707 19 8 6.1748 1.2106 3.5299 20 7 4.9055 2.5006 4.8132 21 6 4.3038 1.4101 5.3862 22 1 4.5899 0.4140 5.0827 23 6 3.3260 1.5866 6.3576 24 7 2.9775 2.7988 6.7266 25 14 2.5067 0.1007 7.1389 26 1 3.5340 -0.7342 7.8116 27 1 1.5060 0.5553 8.1375 28 1 1.8284 -0.7000 6.0882 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9878 0.9298 0.0005 35 1 3.4822 3.5618 0.8911 36 1 3.4827 3.5623 -0.8889 37 1 5.1127 5.7996 -1.0249 38 1 5.8831 6.2435 0.5171 39 1 4.3415 5.3535 0.5161 40 1 7.8552 3.3259 -0.5119 41 1 7.8551 5.1058 -0.5108 42 1 9.6620 2.8900 0.8157 43 1 10.1839 4.3184 1.8106 44 1 9.1458 1.8723 2.9857 45 1 8.9769 3.4972 3.7820 46 1 7.0124 4.1159 4.0116 47 1 5.7604 4.1411 2.7466 48 1 4.6483 3.3954 5.0856 49 1 2.2947 2.9220 7.4043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231225425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:47 Heat of formation + Delta-G solvation = -92.700914 kcal Electronic energy + Delta-G solvation = -31616.215357 eV Core-core repulsion = 27385.692942 eV Total energy + Delta-G solvation = -4230.522415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.60661 -40.91486 -40.09499 -39.41710 -36.50910 -35.91435 -35.51645 -33.75122 -33.30986 -32.06243 -30.61245 -28.69904 -27.50248 -27.21431 -25.28473 -25.15558 -23.94629 -21.41964 -21.09198 -20.63068 -20.22478 -19.91142 -18.60966 -17.83125 -17.59021 -17.41557 -17.14067 -16.82297 -16.71782 -16.46447 -16.24330 -16.04464 -15.59176 -15.45349 -15.08333 -14.69416 -14.58978 -14.13646 -13.99036 -13.93275 -13.78154 -13.53973 -13.40730 -13.21904 -13.11749 -12.97896 -12.69062 -12.66622 -12.60183 -12.46243 -12.24931 -12.16240 -12.08107 -11.83797 -11.63755 -11.49125 -11.04224 -10.82128 -10.36009 -10.24766 -10.00628 -9.72551 -9.32101 -8.47384 -5.95478 1.36117 1.36999 1.48034 1.53478 1.66416 1.81311 2.07082 2.26161 2.37471 2.83743 3.18644 3.37830 3.49587 3.63982 3.76560 3.83914 4.14827 4.15363 4.16308 4.21329 4.24423 4.26764 4.28712 4.32982 4.37836 4.48212 4.50676 4.61298 4.67940 4.74473 4.84377 4.94905 4.95430 4.98678 5.00580 5.02740 5.20392 5.29706 5.33751 5.38301 5.47371 5.70579 5.93872 6.16877 6.38280 6.41527 6.61099 7.11814 7.13409 7.22835 7.56583 8.14742 8.70104 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006949 B = 0.005348 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4028.324494 B = 5234.625931 C = 8219.424228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C 0.509 3.491 4 O -0.582 6.582 5 N -0.717 5.717 6 C 0.103 3.897 7 C 0.507 3.493 8 O -0.540 6.540 9 N -0.609 5.609 10 C 0.067 3.933 11 C 0.139 3.861 12 C 0.009 3.991 13 H 0.099 0.901 14 C -0.110 4.110 15 C -0.004 4.004 16 N -0.459 5.459 17 C 0.030 3.970 18 C 0.444 3.556 19 O -0.609 6.609 20 N -0.578 5.578 21 C -0.328 4.328 22 H 0.074 0.926 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.987 3.013 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 8.298 -15.629 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 C 0.297 3.703 4 O -0.462 6.462 5 N -0.371 5.371 6 C -0.024 4.024 7 C 0.293 3.707 8 O -0.416 6.416 9 N -0.342 5.342 10 C -0.075 4.075 11 C 0.016 3.984 12 C -0.101 4.101 13 H 0.117 0.883 14 C -0.148 4.148 15 C -0.133 4.133 16 N -0.182 5.182 17 C -0.102 4.102 18 C 0.231 3.769 19 O -0.494 6.494 20 N -0.217 5.217 21 C -0.458 4.458 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.811 3.189 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.225 0.775 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.891 7.175 -16.037 18.531 hybrid contribution -0.224 0.074 1.639 1.656 sum 5.667 7.249 -14.398 17.087 Atomic orbital electron populations 1.21513 0.92578 1.02816 1.02062 1.21705 0.98884 0.91577 1.06020 1.21400 0.81309 0.93201 0.74373 1.90641 1.56023 1.47865 1.51715 1.45856 1.07734 1.08705 1.74834 1.21104 0.91807 0.85420 1.04080 1.20415 0.89364 0.84462 0.76443 1.90739 1.69884 1.32005 1.49007 1.47660 1.07206 1.05955 1.73399 1.22126 0.97280 0.84420 1.03688 1.21543 0.78163 1.04131 0.94517 1.24125 0.95115 0.94529 0.96327 0.88310 1.23185 0.95618 0.99516 0.96510 1.23941 0.90474 1.01135 0.97779 1.68513 1.04051 1.30579 1.15051 1.22262 0.97768 0.94054 0.96099 1.20795 0.82630 0.91381 0.82103 1.90504 1.66407 1.27484 1.64968 1.41935 1.35123 1.08935 1.35666 1.19529 1.18630 0.88332 1.19286 0.90814 1.25979 0.97358 1.00619 0.97259 1.69659 1.32382 1.22023 1.32252 0.85075 0.78041 0.77728 0.78060 1.19628 1.19328 1.19782 0.89478 0.94173 0.92204 0.85880 0.88621 0.75070 0.90325 0.87054 0.90018 0.88438 0.91771 0.91344 0.85798 0.89402 0.87660 0.92303 0.90903 0.91128 0.89263 0.77480 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.20 71.98 0.66 -2.53 16 2 C -0.14 -3.62 6.42 29.85 0.19 -3.42 16 3 C 0.51 16.82 7.83 87.66 0.69 17.50 16 4 O -0.58 -22.62 15.98 -3.02 -0.05 -22.67 16 5 N -0.72 -23.37 5.53 -466.79 -2.58 -25.95 16 6 C 0.10 3.06 4.71 85.63 0.40 3.47 16 7 C 0.51 15.30 7.28 87.66 0.64 15.94 16 8 O -0.54 -20.88 14.69 -3.02 -0.04 -20.92 16 9 N -0.61 -13.04 2.83 -846.74 -2.40 -15.44 16 10 C 0.07 0.90 10.24 127.77 1.31 2.20 16 11 C 0.14 2.59 5.59 86.38 0.48 3.07 16 12 C 0.01 0.19 3.55 45.02 0.16 0.35 16 13 H 0.10 1.63 7.92 -2.39 -0.02 1.61 16 14 C -0.11 -2.13 7.84 31.24 0.25 -1.89 16 15 C 0.00 -0.13 7.96 86.36 0.69 0.56 16 16 N -0.46 -15.16 4.37 -885.16 -3.86 -19.02 16 17 C 0.03 1.10 5.28 85.56 0.45 1.55 16 18 C 0.44 22.43 7.83 87.66 0.69 23.12 16 19 O -0.61 -36.10 16.01 -3.06 -0.05 -36.15 16 20 N -0.58 -31.13 5.29 -306.99 -1.62 -32.75 16 21 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 22 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -51.47 13.05 21.66 0.28 -51.19 16 25 Si 0.99 44.62 29.55 68.60 2.03 46.65 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.41 13.77 7.44 -92.71 -0.69 13.08 16 35 H 0.08 2.56 7.40 -2.39 -0.02 2.54 16 36 H 0.11 2.74 8.11 -2.39 -0.02 2.72 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 39 H 0.06 1.01 6.44 -2.38 -0.02 1.00 16 40 H 0.07 1.62 7.15 -2.39 -0.02 1.60 16 41 H 0.12 1.21 8.07 -2.38 -0.02 1.19 16 42 H 0.09 1.79 7.92 -2.39 -0.02 1.77 16 43 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.94 7.48 -2.39 -0.02 1.93 16 46 H 0.07 2.28 7.38 -2.39 -0.02 2.26 16 47 H 0.09 2.99 8.08 -2.38 -0.02 2.97 16 48 H 0.39 20.18 7.90 -92.71 -0.73 19.44 16 49 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -84.71 407.42 -0.86 -85.57 By element: Atomic # 1 Polarization: 51.23 SS G_CDS: -0.45 Total: 50.78 kcal Atomic # 6 Polarization: 33.20 SS G_CDS: 7.88 Total: 41.08 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -10.18 Total: -144.35 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -0.14 Total: -79.74 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.71 -0.86 -85.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231225425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.129 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds