Wall clock time and date at job start Wed Apr 1 2020 01:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 N 1.46909 * 109.47243 * 179.97438 * 5 4 2 7 7 C 1.46892 * 110.99862 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46880 * 179.97438 * 7 6 5 9 9 O 1.21289 * 120.00030 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.37102 * 120.00146 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99651 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99831 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00284 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99525 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47056 * 60.00740 * 15 13 11 17 17 H 1.48504 * 109.46819 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47573 * 300.00574 * 15 13 11 19 19 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 20 20 C 1.34784 * 119.99971 * 275.00026 * 19 2 1 21 21 O 1.21274 * 119.99897 * 359.72827 * 20 19 2 22 22 C 1.50695 * 119.99635 * 179.97438 * 20 19 2 23 23 H 1.08992 * 109.67439 * 60.50268 * 22 20 19 24 24 C 1.53347 * 109.67228 * 181.03264 * 22 20 19 25 25 C 1.52934 * 108.66429 * 187.27507 * 24 22 20 26 26 N 1.45754 * 110.48316 * 309.22098 * 25 24 22 27 27 C 1.33348 * 124.10383 * 19.11080 * 26 25 24 28 28 O 1.21281 * 118.24527 * 177.73374 * 27 26 25 29 29 C 1.50182 * 123.51082 * 357.75266 * 27 26 25 30 30 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 32 32 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 33 33 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 34 34 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 35 35 H 1.08998 * 109.47016 * 299.99692 * 5 4 2 36 36 H 1.08993 * 109.47367 * 59.99969 * 5 4 2 37 37 H 1.00903 * 110.99593 * 56.04447 * 6 5 4 38 38 H 1.08998 * 109.47505 * 300.00011 * 7 6 5 39 39 H 1.08997 * 109.47448 * 60.00301 * 7 6 5 40 40 H 0.97003 * 120.00236 * 0.02562 * 10 8 7 41 41 H 0.96999 * 120.00129 * 179.97438 * 14 13 11 42 42 H 0.96999 * 119.99984 * 94.99874 * 19 2 1 43 43 H 1.08998 * 109.60215 * 307.02174 * 24 22 20 44 44 H 1.09003 * 109.60312 * 67.50593 * 24 22 20 45 45 H 1.09000 * 109.29254 * 188.91527 * 25 24 22 46 46 H 1.09000 * 109.14522 * 69.43422 * 25 24 22 47 47 H 0.96993 * 117.94267 * 199.08819 * 26 25 24 48 48 H 1.09001 * 109.40313 * 257.45643 * 29 27 26 49 49 H 1.08999 * 109.39993 * 137.71128 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0546 -1.3062 -2.5129 7 6 5.5180 -1.2226 -2.6083 8 6 5.9825 -1.9435 -3.8476 9 8 5.1739 -2.4743 -4.5794 10 7 7.2963 -1.9976 -4.1431 11 6 7.7189 -2.6530 -5.2708 12 1 6.9988 -3.1256 -5.9224 13 6 9.0734 -2.7083 -5.5757 14 7 9.9494 -2.1329 -4.7831 15 14 9.6491 -3.6019 -7.1118 16 1 9.0372 -2.9722 -8.3095 17 1 11.1285 -3.5169 -7.2087 18 1 9.2394 -5.0274 -7.0382 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0182 2.3572 21 8 1.8633 1.1597 2.4104 22 6 2.6489 -0.7287 3.5877 23 1 3.6516 -1.1150 3.4051 24 6 2.6781 0.2462 4.7710 25 6 3.3579 -0.4420 5.9555 26 7 2.7595 -1.7486 6.1983 27 6 2.0365 -2.4184 5.3002 28 8 1.6230 -3.5182 5.6010 29 6 1.7071 -1.8840 3.9358 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7714 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8531 0.4371 -1.3573 36 1 3.9994 -1.0727 -0.4260 37 1 3.6167 -0.9413 -3.3455 38 1 5.8195 -0.1765 -2.6616 39 1 5.9665 -1.6857 -1.7295 40 1 7.9430 -1.5729 -3.5581 41 1 10.8950 -2.1718 -4.9958 42 1 2.2491 -1.6317 1.1526 43 1 3.2394 1.1390 4.4955 44 1 1.6591 0.5215 5.0432 45 1 3.2445 0.1772 6.8453 46 1 4.4184 -0.5665 5.7361 47 1 2.8961 -2.1566 7.0676 48 1 0.6772 -1.5272 3.9256 49 1 1.8210 -2.6787 3.1985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268361529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:35 Heat of formation + Delta-G solvation = -157.185880 kcal Electronic energy + Delta-G solvation = -29014.464323 eV Core-core repulsion = 24781.145630 eV Total energy + Delta-G solvation = -4233.318693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71888 -40.53381 -40.13938 -38.10678 -37.23516 -36.26363 -35.68351 -34.36827 -33.27835 -32.36638 -30.60939 -30.25228 -27.78143 -26.44134 -25.75153 -24.32167 -23.22556 -21.98915 -21.40790 -21.04452 -20.17802 -19.90525 -18.59387 -18.02768 -17.79569 -17.39126 -17.13988 -16.91297 -16.45206 -16.40913 -15.95836 -15.92727 -15.42335 -15.22475 -15.16079 -14.96043 -14.77018 -14.57695 -14.42989 -14.21138 -13.83660 -13.53956 -13.47757 -13.19528 -12.94613 -12.84829 -12.81316 -12.67190 -12.43637 -12.22279 -12.14055 -12.10703 -12.05207 -12.01527 -11.74497 -11.50011 -11.35410 -10.58770 -10.35413 -10.08158 -10.06011 -10.01884 -9.33305 -8.46632 -5.95494 1.40170 1.42244 1.53083 1.54734 1.62718 2.05169 2.18993 2.29276 2.32055 2.90023 3.20617 3.42774 3.49989 3.60530 3.69677 3.78160 3.96079 4.05745 4.13070 4.22476 4.26680 4.33525 4.42178 4.44973 4.52674 4.54499 4.62162 4.65550 4.70406 4.72711 4.83610 4.88621 4.93679 5.02202 5.10126 5.21670 5.23577 5.34845 5.40853 5.58443 5.80490 5.89107 6.10484 6.30108 6.40621 6.57179 6.59923 7.12393 7.16601 7.26014 7.56120 8.11254 8.70493 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.001833 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.010930 B =15269.065674 C =16341.444117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.116 4.116 5 C 0.062 3.938 6 N -0.682 5.682 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.993 3.007 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.714 5.714 20 C 0.522 3.478 21 O -0.573 6.573 22 C -0.105 4.105 23 H 0.125 0.875 24 C -0.116 4.116 25 C 0.110 3.890 26 N -0.712 5.712 27 C 0.520 3.480 28 O -0.607 6.607 29 C -0.120 4.120 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.344 0.656 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.412 0.588 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.405 0.595 48 H 0.106 0.894 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 7.807 22.375 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.067 4.067 6 N -0.314 5.314 7 C -0.068 4.068 8 C 0.224 3.776 9 O -0.510 6.510 10 N -0.211 5.211 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.309 3.691 21 O -0.452 6.452 22 C -0.126 4.126 23 H 0.143 0.857 24 C -0.154 4.154 25 C -0.014 4.014 26 N -0.362 5.362 27 C 0.308 3.692 28 O -0.489 6.489 29 C -0.160 4.160 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.249 0.751 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.241 0.759 48 H 0.124 0.876 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.470 7.269 22.132 27.423 hybrid contribution 1.027 0.203 -0.531 1.174 sum -13.443 7.472 21.601 26.517 Atomic orbital electron populations 1.22107 0.94388 1.02777 1.02302 1.20855 0.94430 0.96698 0.83608 0.90772 1.21782 0.94024 1.02298 0.97293 1.22037 0.95842 0.95942 0.92845 1.60118 1.03668 1.61128 1.06468 1.21524 0.90318 0.98952 0.95959 1.20905 0.82400 0.85090 0.89182 1.90488 1.54234 1.52023 1.54217 1.41942 1.06384 1.49176 1.23566 1.19637 0.92367 1.32105 1.02327 0.90279 1.26046 0.95196 0.98084 1.01992 1.69661 1.02955 1.44441 1.39052 0.84991 0.77296 0.78497 0.77573 1.19666 1.19515 1.19710 1.46151 1.66501 1.14731 1.09236 1.20709 0.76701 0.86762 0.84914 1.90706 1.51520 1.17440 1.85576 1.21467 1.01875 0.96090 0.93209 0.85704 1.21718 1.02870 0.98254 0.92598 1.21644 0.97767 0.82310 0.99635 1.45544 1.52316 1.21229 1.17129 1.20304 0.77129 0.84161 0.87625 1.90777 1.55178 1.22806 1.80184 1.21604 1.01618 0.98788 0.93990 0.91421 0.93404 0.90790 0.89907 0.89847 0.95180 0.90280 0.83754 0.91903 0.87780 0.76972 0.91277 0.75093 0.88539 0.91128 0.87685 0.89490 0.75891 0.87566 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.15 2.16 2.58 44.99 0.12 2.28 16 3 H 0.07 1.35 7.57 -2.38 -0.02 1.33 16 4 C -0.12 -1.80 5.01 30.59 0.15 -1.65 16 5 C 0.06 1.24 5.57 86.30 0.48 1.72 16 6 N -0.68 -19.79 6.13 -517.94 -3.17 -22.96 16 7 C 0.06 2.13 6.17 85.56 0.53 2.66 16 8 C 0.44 20.44 7.82 87.66 0.69 21.12 16 9 O -0.62 -34.07 15.78 -3.06 -0.05 -34.12 16 10 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 11 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 12 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 15 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 N -0.71 -8.77 4.44 -442.54 -1.96 -10.73 16 20 C 0.52 7.64 7.10 87.65 0.62 8.26 16 21 O -0.57 -12.78 15.55 -3.01 -0.05 -12.83 16 22 C -0.11 -0.97 2.60 -11.40 -0.03 -1.00 16 23 H 0.13 0.79 8.13 -2.39 -0.02 0.77 16 24 C -0.12 -0.94 4.72 30.69 0.14 -0.79 16 25 C 0.11 0.48 7.17 86.50 0.62 1.10 16 26 N -0.71 -6.83 5.45 -467.29 -2.55 -9.38 16 27 C 0.52 8.19 7.71 87.72 0.68 8.87 16 28 O -0.61 -15.61 17.78 -3.03 -0.05 -15.66 16 29 C -0.12 -1.28 5.19 29.71 0.15 -1.13 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.43 7.75 -2.39 -0.02 1.42 16 37 H 0.34 10.59 8.43 -89.69 -0.76 9.84 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.41 3.59 8.29 -92.71 -0.77 2.82 16 43 H 0.10 0.85 7.88 -2.39 -0.02 0.83 16 44 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 45 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.41 3.38 8.80 -92.71 -0.82 2.56 16 48 H 0.11 1.15 8.09 -2.39 -0.02 1.13 16 49 H 0.12 1.05 7.92 -2.39 -0.02 1.03 16 Total: -1.00 -78.60 406.42 -3.10 -81.70 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -2.07 Total: 37.46 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.11 Total: 21.66 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -9.02 Total: -122.84 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -0.15 Total: -62.61 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -78.60 -3.10 -81.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268361529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.483 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds