Wall clock time and date at job start Wed Apr 1 2020 00:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 119.99813 * 2 1 4 4 N 1.34775 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.46509 * 119.99864 * 355.31402 * 4 2 1 6 6 C 1.46496 * 120.00383 * 175.31022 * 4 2 1 7 7 C 1.50704 * 109.46969 * 90.00038 * 6 4 2 8 8 O 1.21282 * 119.99979 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00228 * 179.97438 * 7 6 4 10 10 C 1.47426 * 125.65119 * 179.71994 * 9 7 6 11 11 C 1.55133 * 104.72244 * 155.81912 * 10 9 7 12 12 H 1.08997 * 111.22325 * 279.17287 * 11 10 9 13 13 N 1.46905 * 110.90488 * 155.27575 * 11 10 9 14 14 C 1.46894 * 110.99865 * 92.97782 * 13 11 10 15 15 C 1.50702 * 109.47021 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99873 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00317 * 179.97438 * 15 14 13 18 18 C 1.37088 * 120.00261 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00131 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99649 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 60.00063 * 22 20 18 24 24 H 1.48500 * 109.46985 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47246 * 300.00280 * 22 20 18 26 26 C 1.55159 * 101.48415 * 37.29500 * 11 10 9 27 27 H 1.08998 * 110.71887 * 82.70108 * 26 11 10 28 28 C 1.53007 * 110.71740 * 205.96778 * 26 11 10 29 29 C 1.47025 * 125.64808 * 0.02973 * 9 7 6 30 30 H 1.09001 * 109.46932 * 185.21384 * 1 2 3 31 31 H 1.08996 * 109.47345 * 305.21202 * 1 2 3 32 32 H 1.08993 * 109.47013 * 65.21303 * 1 2 3 33 33 H 1.08995 * 109.47075 * 275.46162 * 5 4 2 34 34 H 1.09006 * 109.46829 * 35.46375 * 5 4 2 35 35 H 1.09000 * 109.47020 * 155.46144 * 5 4 2 36 36 H 1.08997 * 109.47370 * 210.00034 * 6 4 2 37 37 H 1.08996 * 109.46992 * 330.00761 * 6 4 2 38 38 H 1.09004 * 110.36849 * 274.74648 * 10 9 7 39 39 H 1.08996 * 110.36738 * 37.07132 * 10 9 7 40 40 H 1.00896 * 110.99582 * 216.92974 * 13 11 10 41 41 H 1.09006 * 109.47171 * 299.99530 * 14 13 11 42 42 H 1.08991 * 109.47438 * 59.99652 * 14 13 11 43 43 H 0.97003 * 119.99627 * 359.97438 * 17 15 14 44 44 H 0.97005 * 120.00004 * 180.02562 * 21 20 18 45 45 H 1.08990 * 109.46972 * 174.98020 * 28 26 11 46 46 H 1.08999 * 109.46709 * 294.98037 * 28 26 11 47 47 H 1.09002 * 109.46765 * 54.97357 * 28 26 11 48 48 H 1.09008 * 109.87985 * 300.44086 * 29 9 7 49 49 H 1.09002 * 109.88164 * 61.44449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4521 -2.4338 0.1047 6 6 3.6422 -1.1693 -0.1032 7 6 4.2439 -1.1114 1.2773 8 8 3.5230 -1.0726 2.2518 9 7 5.5830 -1.1037 1.4290 10 6 6.3017 -1.0437 2.7148 11 6 7.6893 -1.6720 2.4205 12 1 7.6403 -2.7607 2.4341 13 7 8.6986 -1.1813 3.3685 14 6 8.8195 -2.0827 4.5221 15 6 9.8611 -1.5476 5.4707 16 8 10.4455 -0.5170 5.2110 17 7 10.1432 -2.2142 6.6076 18 6 11.0911 -1.7278 7.4702 19 1 11.6115 -0.8101 7.2391 20 6 11.3824 -2.4153 8.6421 21 7 10.7495 -3.5322 8.9231 22 14 12.6745 -1.7528 9.8172 23 1 12.2724 -0.4018 10.2844 24 1 12.7970 -2.6642 10.9832 25 1 13.9816 -1.6659 9.1179 26 6 7.9692 -1.1455 0.9881 27 1 8.3776 -0.1354 1.0214 28 6 8.9138 -2.0884 0.2399 29 6 6.5691 -1.1473 0.3394 30 1 -0.3633 -1.0234 0.0934 31 1 -0.3634 0.5925 0.8396 32 1 -0.3633 0.4308 -0.9329 33 1 1.2592 -2.6567 1.1541 34 1 0.5055 -2.3533 -0.4297 35 1 2.0494 -3.2337 -0.3327 36 1 3.9696 -2.0803 -0.6042 37 1 3.9670 -0.3019 -0.6777 38 1 6.4124 -0.0091 3.0397 39 1 5.7751 -1.6255 3.4713 40 1 9.5902 -1.0544 2.9138 41 1 7.8599 -2.1468 5.0353 42 1 9.1150 -3.0741 4.1791 43 1 9.6756 -3.0383 6.8154 44 1 10.9525 -4.0120 9.7414 45 1 9.0259 -1.7486 -0.7897 46 1 9.8876 -2.0911 0.7297 47 1 8.5009 -3.0971 0.2468 48 1 6.4334 -2.0561 -0.2472 49 1 6.4533 -0.2726 -0.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274171954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:15 Heat of formation + Delta-G solvation = -120.982160 kcal Electronic energy + Delta-G solvation = -29551.584831 eV Core-core repulsion = 25319.836049 eV Total energy + Delta-G solvation = -4231.748782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57864 -40.64552 -40.08886 -38.95844 -36.51552 -36.24232 -35.60366 -33.54556 -33.22469 -31.94395 -30.37264 -28.90791 -27.86616 -27.36459 -26.75225 -25.75782 -23.11266 -21.60204 -21.09482 -20.94429 -20.02606 -19.85502 -18.49002 -18.19189 -17.85669 -17.51425 -17.15241 -16.74485 -16.52875 -16.42661 -16.07791 -15.80845 -15.41885 -15.26921 -14.89050 -14.61789 -14.43094 -14.25099 -14.12410 -13.98255 -13.85294 -13.70572 -13.50388 -13.44721 -13.24809 -13.17075 -13.00345 -12.94013 -12.75391 -12.51749 -12.44891 -12.14807 -12.12678 -11.97931 -11.52698 -11.51744 -11.26487 -10.99860 -10.37746 -10.03755 -9.79523 -9.77000 -9.42634 -8.48080 -5.97072 1.38636 1.38858 1.40778 1.51667 1.52160 1.80287 2.02656 2.15739 2.28472 2.88565 3.18968 3.25945 3.46188 3.53469 3.66806 3.75038 3.97761 4.12799 4.17105 4.26166 4.27841 4.29530 4.31033 4.40839 4.43815 4.49149 4.54232 4.61492 4.62972 4.69235 4.72610 4.85104 4.90930 4.92669 5.01079 5.09031 5.10140 5.23840 5.34555 5.38949 5.40036 5.86304 6.06331 6.27958 6.33081 6.45055 6.57769 7.00458 7.10482 7.10688 7.53749 8.08732 8.69030 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.001914 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.448735 B =14628.086336 C =15363.278762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.600 6.600 4 N -0.604 5.604 5 C 0.071 3.929 6 C 0.104 3.896 7 C 0.503 3.497 8 O -0.585 6.585 9 N -0.617 5.617 10 C 0.115 3.885 11 C 0.085 3.915 12 H 0.079 0.921 13 N -0.671 5.671 14 C 0.066 3.934 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.101 4.101 27 H 0.087 0.913 28 C -0.139 4.139 29 C 0.104 3.896 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.355 0.645 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -5.442 -26.245 32.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.294 3.706 3 O -0.481 6.481 4 N -0.336 5.336 5 C -0.070 4.070 6 C -0.022 4.022 7 C 0.292 3.708 8 O -0.465 6.465 9 N -0.351 5.351 10 C -0.009 4.009 11 C -0.026 4.026 12 H 0.096 0.904 13 N -0.305 5.305 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.508 6.508 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.120 4.120 27 H 0.105 0.895 28 C -0.196 4.196 29 C -0.018 4.018 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.172 0.828 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.176 0.824 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.126 0.874 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.992 -3.939 -25.452 31.417 hybrid contribution 1.018 -0.531 1.219 1.675 sum -16.974 -4.470 -24.233 29.922 Atomic orbital electron populations 1.22007 0.88078 1.06729 1.05932 1.21728 0.92642 0.82536 0.73720 1.90696 1.72073 1.33215 1.52114 1.47741 1.05637 1.08117 1.72136 1.22194 0.98814 0.83613 1.02406 1.21463 0.81262 1.07501 0.91993 1.21687 0.80569 0.75290 0.93271 1.90685 1.60660 1.51962 1.43192 1.48549 1.05118 1.72444 1.08971 1.22140 0.92105 1.00457 0.86193 1.22765 0.90301 0.97825 0.91680 0.90365 1.59821 1.12864 1.48975 1.08829 1.21580 0.98040 0.94945 0.92073 1.20817 0.86832 0.85926 0.83908 1.90492 1.56376 1.26929 1.77044 1.41928 1.36177 1.24299 1.18562 1.19639 1.16768 1.08785 1.01283 0.90247 1.26065 1.00380 0.95881 0.99023 1.69669 1.42901 1.16444 1.27052 0.84975 0.77992 0.78006 0.77279 1.19921 1.19448 1.19468 1.22399 0.95518 1.01505 0.92575 0.89477 1.21772 0.98127 0.98800 1.00937 1.22415 0.85918 1.04394 0.89054 0.87034 0.89245 0.86935 0.93451 0.87408 0.88304 0.82831 0.87112 0.92950 0.92534 0.82432 0.88762 0.90803 0.76996 0.91268 0.89813 0.92904 0.91164 0.87405 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.01 71.24 0.71 -1.11 16 2 C 0.50 10.53 7.77 87.66 0.68 11.21 16 3 O -0.60 -18.89 16.73 -3.02 -0.05 -18.94 16 4 N -0.60 -9.69 2.36 -851.12 -2.01 -11.70 16 5 C 0.07 0.52 10.01 127.77 1.28 1.80 16 6 C 0.10 1.60 5.08 85.63 0.44 2.04 16 7 C 0.50 12.59 7.92 87.66 0.69 13.28 16 8 O -0.59 -20.61 16.68 -3.04 -0.05 -20.66 16 9 N -0.62 -13.65 3.32 -811.34 -2.70 -16.35 16 10 C 0.12 3.17 6.61 86.93 0.57 3.75 16 11 C 0.08 1.92 2.84 46.39 0.13 2.06 16 12 H 0.08 1.58 7.72 -2.39 -0.02 1.57 16 13 N -0.67 -20.66 6.03 -488.01 -2.94 -23.61 16 14 C 0.07 2.27 6.03 85.56 0.52 2.78 16 15 C 0.44 21.00 7.82 87.66 0.69 21.68 16 16 O -0.62 -34.65 15.78 -3.06 -0.05 -34.70 16 17 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 18 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 22 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.10 -1.61 2.95 -9.60 -0.03 -1.63 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 C -0.14 -1.56 9.13 71.98 0.66 -0.90 16 29 C 0.10 1.35 6.08 86.73 0.53 1.88 16 30 H 0.11 0.49 5.49 -2.39 -0.01 0.47 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.13 6.14 -2.38 -0.01 0.12 16 35 H 0.10 0.25 7.83 -2.39 -0.02 0.24 16 36 H 0.15 0.84 7.86 -2.39 -0.02 0.82 16 37 H 0.11 1.78 7.49 -2.39 -0.02 1.76 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.74 8.03 -2.39 -0.02 1.72 16 40 H 0.35 10.98 8.14 -89.70 -0.73 10.25 16 41 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 42 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 43 H 0.40 19.57 7.90 -92.71 -0.73 18.83 16 44 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 48 H 0.11 0.67 7.82 -2.38 -0.02 0.65 16 49 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -88.09 406.92 0.55 -87.54 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.49 Total: 36.09 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 8.15 Total: 38.12 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -8.99 Total: -132.88 kcal Atomic # 8 Polarization: -74.15 SS G_CDS: -0.15 Total: -74.30 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -88.09 0.55 -87.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274171954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.437 kcal (2) G-P(sol) polarization free energy of solvation -88.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds