Wall clock time and date at job start Wed Apr 1 2020 00:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47489 * 2 1 4 4 O 1.21289 * 119.99493 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00313 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99888 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47166 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99854 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00291 * 179.97438 * 9 7 6 11 11 C 1.52991 * 110.28457 * 299.32554 * 10 9 7 12 12 C 1.54262 * 110.32210 * 61.45082 * 10 9 7 13 13 C 1.54377 * 105.05927 * 118.99940 * 12 10 9 14 14 N 1.48552 * 104.59445 * 336.14521 * 13 12 10 15 15 C 1.46902 * 110.99920 * 159.04050 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87237 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47047 * 89.99811 * 23 21 19 25 25 H 1.48501 * 109.47447 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.46902 * 330.00508 * 23 21 19 27 27 C 1.48563 * 104.22423 * 39.48587 * 14 13 12 28 28 H 1.08995 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 300.00376 * 1 2 3 30 30 H 1.09003 * 109.47082 * 60.00076 * 1 2 3 31 31 H 1.08994 * 109.47551 * 239.99703 * 2 1 3 32 32 H 1.09003 * 109.47082 * 119.99924 * 2 1 3 33 33 H 0.97001 * 120.00183 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.47491 * 59.99672 * 6 5 3 35 35 H 1.09003 * 109.47066 * 299.99769 * 6 5 3 36 36 H 0.97002 * 120.00200 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46965 * 180.66927 * 11 10 9 38 38 H 1.09005 * 109.47586 * 300.66686 * 11 10 9 39 39 H 1.09001 * 109.47552 * 60.67380 * 11 10 9 40 40 H 1.09002 * 110.32250 * 0.09991 * 12 10 9 41 41 H 1.09000 * 110.32485 * 237.89760 * 12 10 9 42 42 H 1.09000 * 110.40771 * 217.36703 * 13 12 10 43 43 H 1.08995 * 110.51009 * 94.98023 * 13 12 10 44 44 H 1.09004 * 109.47131 * 309.87481 * 15 14 13 45 45 H 1.08994 * 109.47471 * 189.87230 * 15 14 13 46 46 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 47 47 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.40809 * 79.29078 * 27 14 13 49 49 H 1.08997 * 110.41077 * 201.73969 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0482 0.0000 7 6 5.3528 3.0483 -0.0013 8 8 5.9592 1.9979 -0.0022 9 7 6.0267 4.2154 -0.0006 10 6 7.4917 4.2154 -0.0014 11 6 8.0228 3.5114 1.2488 12 6 8.0268 3.5253 -1.2730 13 6 8.8434 4.6116 -2.0055 14 7 8.2793 5.8964 -1.5179 15 6 9.2311 6.9978 -1.7151 16 6 9.3596 7.2932 -3.1873 17 8 8.7207 6.6499 -3.9930 18 7 10.1798 8.2763 -3.6083 19 6 10.2924 8.5489 -4.9472 20 1 9.7235 7.9760 -5.6645 21 6 11.1384 9.5620 -5.3812 22 7 11.8310 10.2588 -4.5084 23 14 11.2924 9.9329 -7.2055 24 1 10.2821 10.9509 -7.5907 25 1 12.6534 10.4532 -7.4918 26 1 11.0638 8.6894 -7.9844 27 6 8.0300 5.6605 -0.0725 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9878 0.9298 -0.0005 34 1 3.4828 3.5616 0.8905 35 1 3.4820 3.5626 -0.8895 36 1 5.5417 5.0555 0.0005 37 1 9.1127 3.5295 1.2406 38 1 7.6576 4.0253 2.1381 39 1 7.6767 2.4779 1.2585 40 1 7.1994 3.1882 -1.8974 41 1 8.6678 2.6850 -1.0065 42 1 8.7118 4.5235 -3.0839 43 1 9.8990 4.5365 -1.7447 44 1 10.2044 6.7129 -1.3154 45 1 8.8713 7.8863 -1.1963 46 1 10.6905 8.7910 -2.9640 47 1 12.4218 10.9658 -4.8114 48 1 8.9579 5.7488 0.4925 49 1 7.2860 6.3623 0.3044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278369842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:17 Heat of formation + Delta-G solvation = -103.765430 kcal Electronic energy + Delta-G solvation = -29478.755419 eV Core-core repulsion = 25247.753210 eV Total energy + Delta-G solvation = -4231.002209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81461 -39.89093 -38.80725 -37.64574 -34.96577 -34.55792 -33.82787 -33.15987 -31.88820 -31.20632 -29.68823 -28.19036 -27.67110 -25.39809 -24.38408 -23.84877 -21.61002 -21.17463 -20.70614 -19.72067 -19.09270 -18.09671 -17.86189 -16.88641 -16.48451 -16.36229 -16.09727 -15.84163 -15.49882 -15.21733 -14.66901 -14.52644 -14.38481 -13.99522 -13.90729 -13.74541 -13.45466 -13.29201 -13.09456 -12.85777 -12.66538 -12.49421 -12.35965 -12.13268 -12.10371 -11.94878 -11.57220 -11.52896 -11.50324 -11.13780 -11.07309 -10.97730 -10.70163 -10.40448 -10.24287 -10.23138 -10.00515 -9.52284 -9.50426 -9.27385 -8.55126 -8.07650 -7.96350 -6.42967 -3.83767 2.26264 2.34888 2.50442 3.16329 3.16926 3.25663 3.31375 3.88138 3.97498 4.21180 4.24123 4.36909 4.48950 4.70129 4.71395 4.72316 4.89547 4.98192 5.04214 5.06247 5.20214 5.23016 5.30670 5.34100 5.44176 5.44461 5.47282 5.56921 5.60478 5.69224 5.74265 5.78604 5.84418 5.94614 5.97383 6.04759 6.17305 6.24986 6.38150 6.43165 7.03383 7.11162 7.14521 7.25406 7.54045 7.87155 7.91171 8.04811 8.60411 9.17065 9.53006 10.04890 10.74791 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.001879 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.993977 B =14901.809294 C =15827.794766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.542 6.542 5 N -0.720 5.720 6 C 0.098 3.902 7 C 0.512 3.488 8 O -0.537 6.537 9 N -0.705 5.705 10 C 0.173 3.827 11 C -0.157 4.157 12 C -0.118 4.118 13 C 0.036 3.964 14 N -0.483 5.483 15 C 0.034 3.966 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.027 3.973 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.405 0.595 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.059 0.941 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -16.353 15.460 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.419 6.419 5 N -0.375 5.375 6 C -0.030 4.030 7 C 0.298 3.702 8 O -0.414 6.414 9 N -0.357 5.357 10 C 0.087 3.913 11 C -0.215 4.215 12 C -0.157 4.157 13 C -0.092 4.092 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.483 -16.539 14.577 25.842 hybrid contribution 1.464 0.713 -0.064 1.629 sum -12.019 -15.826 14.513 24.608 Atomic orbital electron populations 1.21535 0.92861 1.01680 1.03431 1.21616 0.98696 0.93343 1.04623 1.20838 0.81539 0.92175 0.75508 1.90722 1.55300 1.46551 1.49335 1.45762 1.07692 1.08197 1.75880 1.21069 0.91249 0.85703 1.04958 1.20405 0.89487 0.84303 0.76043 1.90667 1.69695 1.31218 1.49870 1.46016 1.06889 1.08453 1.74327 1.21052 0.78862 0.95402 0.95971 1.22195 1.01116 1.02297 0.95916 1.22678 1.00290 0.97578 0.95115 1.23216 0.95738 0.87835 1.02437 1.65180 1.41299 1.03686 1.10480 1.22072 0.94683 0.95582 0.97457 1.19667 0.84197 0.84102 0.89051 1.90511 1.48108 1.52117 1.55368 1.41855 1.38958 1.30800 1.08551 1.19692 1.23934 1.16098 0.83080 0.87939 1.25250 0.96284 0.96250 1.00142 1.69609 1.27906 1.22468 1.34380 0.85861 0.77395 0.78840 0.82216 1.20400 1.20944 1.19450 1.23441 1.00668 0.94653 0.91385 0.91987 0.91977 0.91887 0.88678 0.88775 0.75000 0.88462 0.88185 0.75915 0.91577 0.92539 0.90304 0.90619 0.90712 0.88119 0.94238 0.93129 0.89236 0.77529 0.91892 0.92285 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.15 0.34 -0.54 16 2 C -0.14 -0.84 6.42 -27.89 -0.18 -1.02 16 3 C 0.51 4.77 7.83 -10.99 -0.09 4.69 16 4 O -0.54 -7.06 15.98 5.55 0.09 -6.97 16 5 N -0.72 -6.06 5.53 -61.47 -0.34 -6.40 16 6 C 0.10 0.82 6.15 -5.19 -0.03 0.79 16 7 C 0.51 5.03 7.06 -10.99 -0.08 4.95 16 8 O -0.54 -6.49 12.96 5.56 0.07 -6.42 16 9 N -0.71 -6.58 5.10 -46.33 -0.24 -6.81 16 10 C 0.17 1.85 1.01 -130.44 -0.13 1.72 16 11 C -0.16 -1.48 8.16 37.15 0.30 -1.18 16 12 C -0.12 -1.52 5.48 -25.35 -0.14 -1.66 16 13 C 0.04 0.55 5.80 -2.19 -0.01 0.54 16 14 N -0.48 -7.52 5.06 -231.42 -1.17 -8.69 16 15 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 16 C 0.44 10.29 7.58 -10.98 -0.08 10.20 16 17 O -0.58 -15.37 14.42 5.55 0.08 -15.29 16 18 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.03 0.31 5.69 -2.18 -0.01 0.29 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 3.15 7.44 -40.82 -0.30 2.84 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.41 3.08 8.27 -40.82 -0.34 2.74 16 37 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.85 6.31 -51.93 -0.33 0.53 16 40 H 0.08 1.09 7.31 -51.93 -0.38 0.71 16 41 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 42 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 43 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 44 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 45 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 46 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 48 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 49 H 0.09 0.83 7.75 -51.93 -0.40 0.43 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -34.23 398.90 -8.01 -42.24 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.78 Total: 12.73 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -0.38 Total: 11.43 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -1.08 Total: -59.69 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: 0.24 Total: -28.68 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.23 -8.01 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278369842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.523 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds