Wall clock time and date at job start Wed Apr 1 2020 00:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47489 * 2 1 4 4 O 1.21289 * 119.99493 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00313 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99888 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47166 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99854 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00291 * 179.97438 * 9 7 6 11 11 C 1.52991 * 110.28457 * 299.32554 * 10 9 7 12 12 C 1.54262 * 110.32210 * 61.45082 * 10 9 7 13 13 C 1.54377 * 105.05927 * 118.99940 * 12 10 9 14 14 N 1.48552 * 104.59445 * 336.14521 * 13 12 10 15 15 C 1.46902 * 110.99920 * 159.04050 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87237 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47047 * 89.99811 * 23 21 19 25 25 H 1.48501 * 109.47447 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.46902 * 330.00508 * 23 21 19 27 27 C 1.48563 * 104.22423 * 39.48587 * 14 13 12 28 28 H 1.08995 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 300.00376 * 1 2 3 30 30 H 1.09003 * 109.47082 * 60.00076 * 1 2 3 31 31 H 1.08994 * 109.47551 * 239.99703 * 2 1 3 32 32 H 1.09003 * 109.47082 * 119.99924 * 2 1 3 33 33 H 0.97001 * 120.00183 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.47491 * 59.99672 * 6 5 3 35 35 H 1.09003 * 109.47066 * 299.99769 * 6 5 3 36 36 H 0.97002 * 120.00200 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46965 * 180.66927 * 11 10 9 38 38 H 1.09005 * 109.47586 * 300.66686 * 11 10 9 39 39 H 1.09001 * 109.47552 * 60.67380 * 11 10 9 40 40 H 1.09002 * 110.32250 * 0.09991 * 12 10 9 41 41 H 1.09000 * 110.32485 * 237.89760 * 12 10 9 42 42 H 1.09000 * 110.40771 * 217.36703 * 13 12 10 43 43 H 1.08995 * 110.51009 * 94.98023 * 13 12 10 44 44 H 1.09004 * 109.47131 * 309.87481 * 15 14 13 45 45 H 1.08994 * 109.47471 * 189.87230 * 15 14 13 46 46 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 47 47 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.40809 * 79.29078 * 27 14 13 49 49 H 1.08997 * 110.41077 * 201.73969 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0482 0.0000 7 6 5.3528 3.0483 -0.0013 8 8 5.9592 1.9979 -0.0022 9 7 6.0267 4.2154 -0.0006 10 6 7.4917 4.2154 -0.0014 11 6 8.0228 3.5114 1.2488 12 6 8.0268 3.5253 -1.2730 13 6 8.8434 4.6116 -2.0055 14 7 8.2793 5.8964 -1.5179 15 6 9.2311 6.9978 -1.7151 16 6 9.3596 7.2932 -3.1873 17 8 8.7207 6.6499 -3.9930 18 7 10.1798 8.2763 -3.6083 19 6 10.2924 8.5489 -4.9472 20 1 9.7235 7.9760 -5.6645 21 6 11.1384 9.5620 -5.3812 22 7 11.8310 10.2588 -4.5084 23 14 11.2924 9.9329 -7.2055 24 1 10.2821 10.9509 -7.5907 25 1 12.6534 10.4532 -7.4918 26 1 11.0638 8.6894 -7.9844 27 6 8.0300 5.6605 -0.0725 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9878 0.9298 -0.0005 34 1 3.4828 3.5616 0.8905 35 1 3.4820 3.5626 -0.8895 36 1 5.5417 5.0555 0.0005 37 1 9.1127 3.5295 1.2406 38 1 7.6576 4.0253 2.1381 39 1 7.6767 2.4779 1.2585 40 1 7.1994 3.1882 -1.8974 41 1 8.6678 2.6850 -1.0065 42 1 8.7118 4.5235 -3.0839 43 1 9.8990 4.5365 -1.7447 44 1 10.2044 6.7129 -1.3154 45 1 8.8713 7.8863 -1.1963 46 1 10.6905 8.7910 -2.9640 47 1 12.4218 10.9658 -4.8114 48 1 8.9579 5.7488 0.4925 49 1 7.2860 6.3623 0.3044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278369842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:16 Heat of formation + Delta-G solvation = -132.532166 kcal Electronic energy + Delta-G solvation = -29480.002838 eV Core-core repulsion = 25247.753210 eV Total energy + Delta-G solvation = -4232.249628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.68050 -40.76390 -40.15650 -39.04203 -36.14392 -35.65360 -35.34201 -33.72262 -33.31548 -32.76019 -30.74746 -29.00212 -28.85947 -26.89254 -25.45432 -24.83097 -22.76161 -22.05315 -21.40290 -21.05384 -20.43333 -19.83790 -18.80993 -17.78675 -17.73724 -17.20175 -17.06458 -16.81219 -16.66821 -16.34939 -16.16088 -15.88857 -15.52284 -15.44284 -15.09525 -14.63629 -14.49957 -14.26658 -14.09690 -13.94337 -13.64137 -13.51934 -13.32697 -13.15866 -13.12439 -13.02053 -12.92109 -12.69614 -12.62554 -12.41864 -12.21374 -12.13150 -12.01745 -11.96703 -11.83156 -11.47414 -11.01574 -10.84791 -10.32745 -10.26008 -10.08180 -9.99654 -9.37936 -8.46445 -5.94706 1.37284 1.41082 1.49502 1.53314 1.62498 1.78844 2.07077 2.28255 2.46670 2.80496 3.20432 3.31521 3.43400 3.64828 3.74763 3.84558 4.00733 4.19566 4.23580 4.25111 4.28767 4.34009 4.37600 4.42023 4.45802 4.54059 4.62841 4.66848 4.75301 4.76712 4.83806 4.89384 5.01335 5.07715 5.10932 5.14333 5.23850 5.30596 5.39441 5.41080 5.53600 5.82574 5.89432 6.07575 6.46797 6.50143 6.61673 7.13801 7.14072 7.19584 7.57836 8.14339 8.70899 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.001879 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.993977 B =14901.809294 C =15827.794766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.508 3.492 4 O -0.585 6.585 5 N -0.715 5.715 6 C 0.100 3.900 7 C 0.515 3.485 8 O -0.560 6.560 9 N -0.701 5.701 10 C 0.178 3.822 11 C -0.149 4.149 12 C -0.109 4.109 13 C 0.038 3.962 14 N -0.504 5.504 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.031 3.969 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.415 0.585 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.080 0.920 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -16.598 17.245 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.297 3.703 4 O -0.465 6.465 5 N -0.370 5.370 6 C -0.027 4.027 7 C 0.301 3.699 8 O -0.439 6.439 9 N -0.353 5.353 10 C 0.091 3.909 11 C -0.207 4.207 12 C -0.148 4.148 13 C -0.090 4.090 14 N -0.228 5.228 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.504 6.504 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.096 4.096 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.256 0.744 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.252 0.748 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.277 -16.778 16.395 26.955 hybrid contribution 1.386 0.743 -0.616 1.689 sum -11.891 -16.034 15.779 25.446 Atomic orbital electron populations 1.21541 0.93356 1.02670 1.01951 1.21689 0.98182 0.91257 1.06625 1.21488 0.81272 0.93201 0.74388 1.90702 1.56255 1.48098 1.51487 1.45794 1.07691 1.08361 1.75200 1.21064 0.90204 0.86028 1.05422 1.20564 0.89888 0.84013 0.75394 1.90660 1.70226 1.32027 1.50946 1.45968 1.06519 1.08886 1.73926 1.20988 0.79489 0.95045 0.95338 1.22121 1.01618 1.01383 0.95595 1.22572 0.99386 0.97073 0.95773 1.23059 0.96626 0.89213 1.00148 1.65097 1.40847 1.03027 1.13825 1.21940 0.96563 0.97335 0.92624 1.20811 0.82293 0.82389 0.91685 1.90491 1.49283 1.53116 1.57484 1.41919 1.39828 1.31698 1.07811 1.19624 1.25162 1.17181 0.84223 0.90558 1.25982 0.95451 0.95539 1.04177 1.69662 1.27924 1.22568 1.35894 0.84965 0.77979 0.78366 0.77247 1.19700 1.19488 1.19998 1.23550 1.02277 0.95221 0.88568 0.89692 0.93254 0.93613 0.86826 0.86364 0.74396 0.87190 0.88498 0.74771 0.90716 0.90845 0.91656 0.92634 0.89990 0.92615 0.93656 0.90913 0.86641 0.76984 0.91338 0.90239 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.20 71.98 0.66 -0.97 16 2 C -0.14 -1.40 6.42 29.85 0.19 -1.21 16 3 C 0.51 9.11 7.83 87.66 0.69 9.80 16 4 O -0.59 -15.33 15.98 -3.06 -0.05 -15.38 16 5 N -0.72 -11.39 5.53 -466.78 -2.58 -13.97 16 6 C 0.10 1.60 6.15 85.63 0.53 2.13 16 7 C 0.52 9.51 7.06 87.66 0.62 10.13 16 8 O -0.56 -12.97 12.96 -3.03 -0.04 -13.01 16 9 N -0.70 -11.84 5.10 -418.89 -2.13 -13.97 16 10 C 0.18 3.41 1.01 4.49 0.00 3.42 16 11 C -0.15 -2.39 8.16 71.98 0.59 -1.80 16 12 C -0.11 -2.76 5.48 31.49 0.17 -2.59 16 13 C 0.04 1.18 5.80 86.45 0.50 1.68 16 14 N -0.50 -15.02 5.06 -886.09 -4.49 -19.51 16 15 C 0.05 1.52 5.30 85.56 0.45 1.97 16 16 C 0.44 20.65 7.58 87.66 0.66 21.32 16 17 O -0.62 -34.11 14.42 -3.07 -0.04 -34.15 16 18 N -0.57 -29.16 5.29 -306.98 -1.62 -30.79 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -49.23 13.05 21.66 0.28 -48.94 16 23 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.03 0.60 5.69 86.45 0.49 1.10 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.42 5.88 7.44 -92.71 -0.69 5.19 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.42 5.44 8.27 -92.71 -0.77 4.67 16 37 H 0.07 1.08 8.12 -2.38 -0.02 1.06 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.06 1.28 6.31 -2.39 -0.02 1.26 16 40 H 0.05 1.63 7.31 -2.39 -0.02 1.61 16 41 H 0.08 1.94 7.71 -2.39 -0.02 1.92 16 42 H 0.06 2.24 6.91 -2.39 -0.02 2.22 16 43 H 0.05 1.34 7.82 -2.39 -0.02 1.32 16 44 H 0.07 2.07 7.88 -2.38 -0.02 2.05 16 45 H 0.12 3.18 8.13 -2.39 -0.02 3.16 16 46 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 47 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 48 H 0.08 1.28 7.70 -2.39 -0.02 1.26 16 49 H 0.11 1.65 7.75 -2.39 -0.02 1.63 16 Total: -1.00 -76.71 398.90 -3.00 -79.71 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -1.19 Total: 38.20 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 6.84 Total: 26.77 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -10.54 Total: -127.18 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.13 Total: -62.54 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.71 -3.00 -79.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278369842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.824 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds