Wall clock time and date at job start Wed Apr 1 2020 00:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49730 * 2 1 4 4 C 1.53045 * 109.52556 * 239.91692 * 2 1 3 5 5 C 1.53037 * 109.53927 * 178.66794 * 4 2 1 6 6 C 1.53188 * 109.30999 * 61.36275 * 5 4 2 7 7 N 1.46916 * 108.78211 * 305.36455 * 6 5 4 8 8 C 1.34774 * 120.63412 * 233.63067 * 7 6 5 9 9 O 1.21284 * 120.00072 * 186.10604 * 8 7 6 10 10 C 1.50694 * 120.00008 * 6.10615 * 8 7 6 11 11 C 1.47205 * 109.47194 * 179.97438 * 10 8 7 12 12 C 6.85181 * 141.37777 * 82.29711 * 2 1 3 13 13 C 8.13165 * 137.03231 * 78.72023 * 2 1 3 14 14 C 1.39533 * 120.14304 * 350.91405 * 13 12 11 15 15 C 1.37968 * 119.85684 * 179.74908 * 14 13 12 16 16 C 1.38351 * 120.14163 * 0.55549 * 15 14 13 17 17 C 1.38346 * 120.28314 * 359.69621 * 16 15 14 18 18 C 1.37973 * 120.14267 * 0.02562 * 17 16 15 19 19 C 1.46935 * 118.73765 * 53.61045 * 7 6 5 20 20 H 1.08996 * 109.69968 * 66.24766 * 19 7 6 21 21 C 1.53001 * 109.58743 * 186.60718 * 19 7 6 22 22 N 1.46495 * 109.47488 * 58.32745 * 21 19 7 23 23 C 1.36930 * 120.00342 * 174.97686 * 22 21 19 24 24 H 1.07998 * 119.99934 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00309 * 179.97438 * 23 22 21 26 26 N 1.31618 * 120.00173 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 119.99985 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47058 * 89.99738 * 27 25 23 29 29 H 1.48495 * 109.46915 * 330.00101 * 27 25 23 30 30 H 1.48503 * 109.47138 * 209.99574 * 27 25 23 31 31 H 1.08998 * 109.47466 * 299.93357 * 1 2 3 32 32 H 1.09005 * 109.47291 * 59.93819 * 1 2 3 33 33 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.45813 * 298.69007 * 4 2 1 35 35 H 1.09001 * 109.45799 * 58.66044 * 4 2 1 36 36 H 1.08997 * 109.49799 * 181.32033 * 5 4 2 37 37 H 1.09000 * 109.49580 * 301.38377 * 5 4 2 38 38 H 1.09002 * 109.58813 * 65.16057 * 6 5 4 39 39 H 1.09007 * 109.58581 * 185.43260 * 6 5 4 40 40 H 1.09004 * 109.47292 * 300.00020 * 10 8 7 41 41 H 1.09000 * 109.47135 * 59.99698 * 10 8 7 42 42 H 1.08000 * 120.06769 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.93384 * 180.29879 * 15 14 13 44 44 H 1.07990 * 119.85792 * 179.72393 * 16 15 14 45 45 H 1.08001 * 119.92958 * 180.02562 * 17 16 15 46 46 H 1.08003 * 120.07076 * 179.97438 * 18 17 16 47 47 H 1.08998 * 109.46577 * 298.32709 * 21 19 7 48 48 H 1.09001 * 109.46633 * 178.33177 * 21 19 7 49 49 H 0.97007 * 119.99831 * 354.97986 * 22 21 19 50 50 H 0.96998 * 120.00096 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5715 -0.6943 -1.2654 6 6 4.1058 -1.4255 -0.0299 7 7 3.5047 -0.8281 1.1702 8 6 4.2807 -0.3841 2.1787 9 8 3.7725 0.0046 3.2090 10 6 5.7798 -0.3707 2.0261 11 6 6.3936 0.1550 3.2565 12 6 6.8831 0.5732 4.2382 13 6 7.4802 1.0841 5.4354 14 6 8.4259 0.3251 6.1257 15 6 9.0013 0.8253 7.2756 16 6 8.6339 2.0716 7.7509 17 6 7.6930 2.8268 7.0740 18 6 7.1144 2.3405 5.9197 19 6 2.0412 -0.7235 1.2498 20 1 1.6037 -1.7205 1.2996 21 6 1.6509 0.0709 2.4979 22 7 2.2646 1.3999 2.4426 23 6 1.9731 2.3292 3.4052 24 1 1.2912 2.0822 4.2054 25 6 2.5550 3.5884 3.3531 26 7 2.2753 4.4815 4.2786 27 14 3.7351 4.0155 1.9695 28 1 2.9753 4.5923 0.8313 29 1 4.4393 2.7869 1.5226 30 1 4.7286 5.0070 2.4545 31 1 -0.3634 0.5128 0.8905 32 1 -0.3634 0.5148 -0.8895 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6978 -1.7573 -1.2350 35 1 1.6590 -0.2246 -2.1389 36 1 3.9345 -1.1888 -2.1663 37 1 3.9161 0.3398 -1.2540 38 1 3.8387 -2.4808 -0.0858 39 1 5.1904 -1.3251 0.0136 40 1 6.1359 -1.3852 1.8468 41 1 6.0537 0.2646 1.1838 42 1 8.7102 -0.6498 5.7581 43 1 9.7370 0.2409 7.8083 44 1 9.0839 2.4567 8.6539 45 1 7.4107 3.7992 7.4499 46 1 6.3796 2.9309 5.3924 47 1 2.0008 -0.4542 3.3867 48 1 0.5665 0.1727 2.5393 49 1 2.8773 1.6217 1.7241 50 1 2.6816 5.3615 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319871285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:32 Heat of formation + Delta-G solvation = 86.154191 kcal Electronic energy + Delta-G solvation = -30291.817972 eV Core-core repulsion = 26479.900559 eV Total energy + Delta-G solvation = -3811.917413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.42544 -38.97194 -37.42160 -35.04325 -33.91482 -33.34789 -32.10984 -31.33252 -30.83743 -30.42051 -28.53283 -26.85765 -26.04714 -23.92369 -22.74939 -22.38063 -22.29348 -21.20465 -20.28480 -18.71434 -17.90707 -17.56729 -16.53308 -16.21070 -15.67098 -15.35297 -14.87295 -14.64364 -14.55427 -14.39754 -14.16228 -13.75628 -13.61360 -13.56345 -13.38793 -13.32436 -12.91260 -12.83272 -12.52359 -12.30313 -12.24639 -11.87004 -11.78758 -11.54032 -11.33695 -11.22274 -11.11795 -10.80854 -10.75048 -10.71207 -10.62419 -10.50489 -10.18218 -9.89269 -9.77134 -9.38139 -8.86421 -8.84238 -8.43433 -8.24030 -8.19165 -6.82562 -5.55076 -2.82337 1.07127 1.49798 2.77655 3.03095 3.20319 3.43114 3.44813 3.46444 3.52158 4.13965 4.28378 4.69771 4.76285 4.81690 4.87204 4.98305 5.01042 5.04598 5.10915 5.18509 5.31093 5.33255 5.38066 5.48479 5.50492 5.54167 5.62508 5.65669 5.69787 5.71908 5.76960 5.77593 5.81245 5.89963 5.96056 6.11803 6.13214 6.16816 6.18185 6.24865 6.46168 6.49378 6.58726 6.60492 6.66824 6.68053 6.91719 7.05225 7.18863 7.73622 7.89770 8.21676 8.63074 8.77339 9.44446 10.17629 10.38688 11.65137 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.003966 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.281746 B = 7057.433560 C = 8544.995369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.110 3.890 7 N -0.620 5.620 8 C 0.487 3.513 9 O -0.444 6.444 10 C -0.022 4.022 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.025 3.975 14 C -0.102 4.102 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.087 4.087 19 C 0.147 3.853 20 H 0.069 0.931 21 C 0.158 3.842 22 N -0.729 5.729 23 C -0.205 4.205 24 H 0.086 0.914 25 C -0.003 4.003 26 N -0.943 5.943 27 Si 0.876 3.124 28 H -0.290 1.290 29 H -0.283 1.283 30 H -0.294 1.294 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.355 0.645 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.809 -13.897 -7.324 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.177 4.177 6 C -0.014 4.014 7 N -0.358 5.358 8 C 0.272 3.728 9 O -0.312 6.312 10 C -0.062 4.062 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.025 3.975 14 C -0.120 4.120 15 C -0.144 4.144 16 C -0.135 4.135 17 C -0.135 4.135 18 C -0.105 4.105 19 C 0.044 3.956 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.375 5.375 23 C -0.335 4.335 24 H 0.104 0.896 25 C -0.196 4.196 26 N -0.594 5.594 27 Si 0.709 3.291 28 H -0.217 1.217 29 H -0.210 1.210 30 H -0.221 1.221 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.071 0.929 48 H 0.043 0.957 49 H 0.188 0.812 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.434 -13.585 -6.498 17.771 hybrid contribution 0.978 0.506 -1.221 1.644 sum 10.412 -13.079 -7.719 18.414 Atomic orbital electron populations 1.21775 0.94397 1.01246 1.02611 1.21515 0.96256 1.00705 0.93812 0.90205 1.21591 0.94825 1.00575 0.98099 1.21948 0.96725 1.01504 0.97478 1.21647 0.98005 0.96866 0.84837 1.47953 1.06402 1.63296 1.18114 1.20148 0.87925 0.79898 0.84871 1.91020 1.72566 1.40682 1.26915 1.18667 0.93080 1.02018 0.92391 1.21126 0.97819 0.99361 0.95121 1.18967 1.00194 1.00292 0.93717 1.15896 0.96483 0.94181 0.90902 1.21158 0.96165 0.99354 0.95340 1.20999 1.00544 0.96293 0.96521 1.21230 0.97771 0.94796 0.99751 1.21143 0.96829 1.00329 0.95213 1.21463 0.98461 0.94617 0.95963 1.21592 0.78698 0.98654 0.96671 0.91284 1.21005 0.94900 0.86885 0.94104 1.42594 1.54120 1.10314 1.30442 1.19011 1.20521 0.90788 1.03204 0.89611 1.24511 1.00365 0.96667 0.98090 1.69689 1.48677 1.05674 1.35378 0.86632 0.81993 0.77311 0.83198 1.21730 1.21003 1.22110 0.91164 0.92924 0.93170 0.92032 0.91958 0.91062 0.91490 0.91634 0.90180 0.87413 0.87468 0.85930 0.85870 0.85995 0.85434 0.84938 0.92871 0.95659 0.81207 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.97 37.16 0.33 -1.55 16 2 C -0.10 -1.48 2.24 -90.50 -0.20 -1.68 16 3 H 0.08 1.41 6.91 -51.93 -0.36 1.05 16 4 C -0.11 -1.22 5.17 -26.69 -0.14 -1.36 16 5 C -0.14 -1.37 6.08 -26.61 -0.16 -1.53 16 6 C 0.11 1.11 6.34 -3.72 -0.02 1.09 16 7 N -0.62 -9.23 2.85 -165.22 -0.47 -9.70 16 8 C 0.49 8.82 6.53 -10.99 -0.07 8.75 16 9 O -0.44 -10.39 10.41 5.55 0.06 -10.33 16 10 C -0.02 -0.33 4.55 -30.67 -0.14 -0.47 16 11 C -0.13 -2.47 12.58 -37.12 -0.47 -2.93 16 12 C -0.13 -2.51 13.24 -38.84 -0.51 -3.03 16 13 C 0.03 0.44 5.72 -107.00 -0.61 -0.17 16 14 C -0.10 -1.43 9.75 -39.20 -0.38 -1.81 16 15 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 16 C -0.12 -1.44 10.04 -39.50 -0.40 -1.83 16 17 C -0.12 -1.70 10.03 -39.64 -0.40 -2.09 16 18 C -0.09 -1.53 9.75 -39.20 -0.38 -1.92 16 19 C 0.15 2.30 2.63 -67.59 -0.18 2.13 16 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 21 C 0.16 3.28 4.81 -4.04 -0.02 3.26 16 22 N -0.73 -18.23 2.72 -59.91 -0.16 -18.39 16 23 C -0.20 -6.15 10.30 -15.06 -0.16 -6.30 16 24 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 25 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 26 N -0.94 -31.18 13.97 55.49 0.78 -30.41 16 27 Si 0.88 23.74 27.74 -169.99 -4.71 19.02 16 28 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 29 H -0.28 -7.32 6.52 56.52 0.37 -6.95 16 30 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 31 H 0.07 1.09 6.58 -51.93 -0.34 0.74 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.66 5.94 -51.93 -0.31 0.35 16 40 H 0.11 1.13 7.69 -51.93 -0.40 0.73 16 41 H 0.11 1.41 7.94 -51.93 -0.41 0.99 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.13 2.62 8.06 -52.48 -0.42 2.19 16 47 H 0.05 1.24 6.21 -51.93 -0.32 0.91 16 48 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 49 H 0.35 8.80 3.63 -40.82 -0.15 8.65 16 50 H 0.25 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -37.31 395.94 -10.67 -47.98 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.72 Total: 9.39 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.40 Total: -13.53 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.14 Total: -58.50 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.06 Total: -10.33 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.71 Total: 19.02 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.31 -10.67 -47.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319871285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.134 kcal (2) G-P(sol) polarization free energy of solvation -37.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds