Wall clock time and date at job start Wed Apr 1 2020 00:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49730 * 2 1 4 4 C 1.53045 * 109.52556 * 239.91692 * 2 1 3 5 5 C 1.53037 * 109.53927 * 178.66794 * 4 2 1 6 6 C 1.53188 * 109.30999 * 61.36275 * 5 4 2 7 7 N 1.46916 * 108.78211 * 305.36455 * 6 5 4 8 8 C 1.34774 * 120.63412 * 233.63067 * 7 6 5 9 9 O 1.21284 * 120.00072 * 186.10604 * 8 7 6 10 10 C 1.50694 * 120.00008 * 6.10615 * 8 7 6 11 11 C 1.47205 * 109.47194 * 179.97438 * 10 8 7 12 12 C 6.85181 * 141.37777 * 82.29711 * 2 1 3 13 13 C 8.13165 * 137.03231 * 78.72023 * 2 1 3 14 14 C 1.39533 * 120.14304 * 350.91405 * 13 12 11 15 15 C 1.37968 * 119.85684 * 179.74908 * 14 13 12 16 16 C 1.38351 * 120.14163 * 0.55549 * 15 14 13 17 17 C 1.38346 * 120.28314 * 359.69621 * 16 15 14 18 18 C 1.37973 * 120.14267 * 0.02562 * 17 16 15 19 19 C 1.46935 * 118.73765 * 53.61045 * 7 6 5 20 20 H 1.08996 * 109.69968 * 66.24766 * 19 7 6 21 21 C 1.53001 * 109.58743 * 186.60718 * 19 7 6 22 22 N 1.46495 * 109.47488 * 58.32745 * 21 19 7 23 23 C 1.36930 * 120.00342 * 174.97686 * 22 21 19 24 24 H 1.07998 * 119.99934 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00309 * 179.97438 * 23 22 21 26 26 N 1.31618 * 120.00173 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 119.99985 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47058 * 89.99738 * 27 25 23 29 29 H 1.48495 * 109.46915 * 330.00101 * 27 25 23 30 30 H 1.48503 * 109.47138 * 209.99574 * 27 25 23 31 31 H 1.08998 * 109.47466 * 299.93357 * 1 2 3 32 32 H 1.09005 * 109.47291 * 59.93819 * 1 2 3 33 33 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.45813 * 298.69007 * 4 2 1 35 35 H 1.09001 * 109.45799 * 58.66044 * 4 2 1 36 36 H 1.08997 * 109.49799 * 181.32033 * 5 4 2 37 37 H 1.09000 * 109.49580 * 301.38377 * 5 4 2 38 38 H 1.09002 * 109.58813 * 65.16057 * 6 5 4 39 39 H 1.09007 * 109.58581 * 185.43260 * 6 5 4 40 40 H 1.09004 * 109.47292 * 300.00020 * 10 8 7 41 41 H 1.09000 * 109.47135 * 59.99698 * 10 8 7 42 42 H 1.08000 * 120.06769 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.93384 * 180.29879 * 15 14 13 44 44 H 1.07990 * 119.85792 * 179.72393 * 16 15 14 45 45 H 1.08001 * 119.92958 * 180.02562 * 17 16 15 46 46 H 1.08003 * 120.07076 * 179.97438 * 18 17 16 47 47 H 1.08998 * 109.46577 * 298.32709 * 21 19 7 48 48 H 1.09001 * 109.46633 * 178.33177 * 21 19 7 49 49 H 0.97007 * 119.99831 * 354.97986 * 22 21 19 50 50 H 0.96998 * 120.00096 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5715 -0.6943 -1.2654 6 6 4.1058 -1.4255 -0.0299 7 7 3.5047 -0.8281 1.1702 8 6 4.2807 -0.3841 2.1787 9 8 3.7725 0.0046 3.2090 10 6 5.7798 -0.3707 2.0261 11 6 6.3936 0.1550 3.2565 12 6 6.8831 0.5732 4.2382 13 6 7.4802 1.0841 5.4354 14 6 8.4259 0.3251 6.1257 15 6 9.0013 0.8253 7.2756 16 6 8.6339 2.0716 7.7509 17 6 7.6930 2.8268 7.0740 18 6 7.1144 2.3405 5.9197 19 6 2.0412 -0.7235 1.2498 20 1 1.6037 -1.7205 1.2996 21 6 1.6509 0.0709 2.4979 22 7 2.2646 1.3999 2.4426 23 6 1.9731 2.3292 3.4052 24 1 1.2912 2.0822 4.2054 25 6 2.5550 3.5884 3.3531 26 7 2.2753 4.4815 4.2786 27 14 3.7351 4.0155 1.9695 28 1 2.9753 4.5923 0.8313 29 1 4.4393 2.7869 1.5226 30 1 4.7286 5.0070 2.4545 31 1 -0.3634 0.5128 0.8905 32 1 -0.3634 0.5148 -0.8895 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6978 -1.7573 -1.2350 35 1 1.6590 -0.2246 -2.1389 36 1 3.9345 -1.1888 -2.1663 37 1 3.9161 0.3398 -1.2540 38 1 3.8387 -2.4808 -0.0858 39 1 5.1904 -1.3251 0.0136 40 1 6.1359 -1.3852 1.8468 41 1 6.0537 0.2646 1.1838 42 1 8.7102 -0.6498 5.7581 43 1 9.7370 0.2409 7.8083 44 1 9.0839 2.4567 8.6539 45 1 7.4107 3.7992 7.4499 46 1 6.3796 2.9309 5.3924 47 1 2.0008 -0.4542 3.3867 48 1 0.5665 0.1727 2.5393 49 1 2.8773 1.6217 1.7241 50 1 2.6816 5.3615 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319871285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:31 Heat of formation + Delta-G solvation = 63.463881 kcal Electronic energy + Delta-G solvation = -30292.801898 eV Core-core repulsion = 26479.900559 eV Total energy + Delta-G solvation = -3812.901339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.71940 -40.09394 -38.66446 -36.69951 -35.29426 -34.73422 -33.76830 -32.48125 -32.21352 -31.95406 -29.84680 -28.29485 -27.10105 -25.52134 -24.09447 -23.83408 -23.49981 -22.37749 -21.51274 -19.97669 -19.74345 -19.06731 -17.83313 -17.40750 -16.95766 -16.62340 -16.37859 -16.02411 -15.91741 -15.69789 -15.52206 -15.08079 -14.94495 -14.83974 -14.63774 -14.51173 -14.43424 -14.07751 -13.95532 -13.71473 -13.56246 -13.28590 -13.19312 -12.94598 -12.68160 -12.52829 -12.39333 -12.25803 -12.24635 -11.97902 -11.92041 -11.81709 -11.69350 -11.49215 -11.15115 -11.08007 -10.99495 -9.99402 -9.97507 -9.52967 -9.45879 -8.94423 -8.00169 -5.22446 -0.11031 0.36895 1.17716 1.25154 1.30190 1.43716 1.77316 1.85055 2.26799 2.43648 2.93900 3.06917 3.31586 3.63196 3.76745 3.90189 3.92747 3.96048 3.98467 3.99315 4.16222 4.18684 4.23882 4.31319 4.38852 4.40249 4.42871 4.49947 4.58739 4.60814 4.67676 4.81165 4.84961 4.92800 4.97732 4.99660 5.02364 5.03845 5.15671 5.21486 5.28783 5.40251 5.41268 5.46784 5.48195 5.50760 5.58011 5.73037 5.81097 5.96532 6.23304 6.44663 6.61549 7.12916 7.45434 7.92592 8.11397 9.23884 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.003966 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.281746 B = 7057.433560 C = 8544.995369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.040 0.960 4 C -0.107 4.107 5 C -0.136 4.136 6 C 0.100 3.900 7 N -0.614 5.614 8 C 0.480 3.520 9 O -0.518 6.518 10 C -0.019 4.019 11 C -0.151 4.151 12 C -0.169 4.169 13 C -0.008 4.008 14 C -0.101 4.101 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.125 4.125 18 C -0.125 4.125 19 C 0.153 3.847 20 H 0.099 0.901 21 C 0.157 3.843 22 N -0.722 5.722 23 C -0.191 4.191 24 H 0.044 0.956 25 C -0.072 4.072 26 N -0.992 5.992 27 Si 0.946 3.054 28 H -0.275 1.275 29 H -0.267 1.267 30 H -0.302 1.302 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.160 0.840 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.138 0.862 46 H 0.088 0.912 47 H 0.026 0.974 48 H 0.020 0.980 49 H 0.358 0.642 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 -17.192 -10.096 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.059 0.941 4 C -0.144 4.144 5 C -0.175 4.175 6 C -0.021 4.021 7 N -0.351 5.351 8 C 0.267 3.733 9 O -0.391 6.391 10 C -0.058 4.058 11 C -0.151 4.151 12 C -0.169 4.169 13 C -0.008 4.008 14 C -0.119 4.119 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.144 4.144 19 C 0.050 3.950 20 H 0.117 0.883 21 C 0.031 3.969 22 N -0.366 5.366 23 C -0.323 4.323 24 H 0.062 0.938 25 C -0.262 4.262 26 N -0.646 5.646 27 Si 0.776 3.224 28 H -0.201 1.201 29 H -0.192 1.192 30 H -0.229 1.229 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.177 0.823 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.186 0.814 44 H 0.180 0.820 45 H 0.156 0.844 46 H 0.107 0.893 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.191 0.809 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.154 -16.955 -9.363 22.866 hybrid contribution 0.086 1.415 -0.248 1.439 sum 12.240 -15.540 -9.610 21.992 Atomic orbital electron populations 1.21750 0.93893 1.02634 1.01486 1.21478 0.96728 0.98826 0.95040 0.94106 1.21571 0.95573 1.01372 0.95916 1.21975 0.95906 1.00790 0.98785 1.22118 0.99409 0.98112 0.82440 1.48108 1.05812 1.62184 1.18967 1.20838 0.89525 0.78542 0.84424 1.91017 1.74027 1.44273 1.29787 1.18927 0.90300 1.05220 0.91309 1.22094 0.97717 0.99164 0.96169 1.19806 1.01111 1.01254 0.94778 1.16197 0.98382 0.94684 0.91531 1.21461 0.95000 0.99786 0.95663 1.21534 0.99997 0.96176 0.95292 1.21689 0.96039 0.94433 1.00226 1.21348 0.97389 1.01270 0.94322 1.21317 0.99609 0.95443 0.97992 1.21490 0.79906 0.99105 0.94498 0.88289 1.21013 0.94045 0.85442 0.96385 1.42427 1.54149 1.11000 1.29043 1.18953 1.18722 0.91846 1.02748 0.93838 1.25248 1.02945 0.96720 1.01239 1.69878 1.50625 1.06124 1.37944 0.85499 0.79502 0.77268 0.80150 1.20098 1.19243 1.22895 0.94611 0.91738 0.90493 0.89571 0.90984 0.87355 0.93512 0.88521 0.87643 0.82307 0.85215 0.83842 0.81437 0.81986 0.84436 0.89342 0.95654 0.96217 0.80853 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.97 71.98 0.65 -2.86 16 2 C -0.10 -2.70 2.24 -10.71 -0.02 -2.73 16 3 H 0.04 1.42 6.91 -2.39 -0.02 1.40 16 4 C -0.11 -1.82 5.17 30.62 0.16 -1.66 16 5 C -0.14 -2.01 6.08 30.67 0.19 -1.82 16 6 C 0.10 1.51 6.34 86.36 0.55 2.06 16 7 N -0.61 -16.84 2.85 -795.03 -2.27 -19.11 16 8 C 0.48 17.12 6.53 87.66 0.57 17.69 16 9 O -0.52 -25.40 10.41 -3.04 -0.03 -25.43 16 10 C -0.02 -0.53 4.55 28.04 0.13 -0.40 16 11 C -0.15 -5.68 12.58 31.13 0.39 -5.29 16 12 C -0.17 -6.85 13.24 30.02 0.40 -6.45 16 13 C -0.01 -0.29 5.72 -21.41 -0.12 -0.41 16 14 C -0.10 -2.75 9.75 22.52 0.22 -2.53 16 15 C -0.11 -2.36 10.03 22.23 0.22 -2.14 16 16 C -0.11 -2.36 10.04 22.32 0.22 -2.14 16 17 C -0.13 -3.75 10.03 22.23 0.22 -3.53 16 18 C -0.13 -4.85 9.75 22.52 0.22 -4.63 16 19 C 0.15 4.60 2.63 44.97 0.12 4.72 16 20 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 21 C 0.16 6.86 4.81 86.38 0.42 7.28 16 22 N -0.72 -37.90 2.72 -343.47 -0.93 -38.84 16 23 C -0.19 -12.29 10.30 84.03 0.87 -11.43 16 24 H 0.04 3.10 8.06 -2.91 -0.02 3.08 16 25 C -0.07 -4.74 5.50 84.86 0.47 -4.27 16 26 N -0.99 -69.89 13.97 21.65 0.30 -69.59 16 27 Si 0.95 51.72 27.74 68.60 1.90 53.62 16 28 H -0.27 -14.22 7.11 99.48 0.71 -13.52 16 29 H -0.27 -13.61 6.52 99.48 0.65 -12.96 16 30 H -0.30 -16.74 7.11 99.48 0.71 -16.04 16 31 H 0.03 1.12 6.58 -2.39 -0.02 1.11 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.10 5.94 -2.38 -0.01 1.09 16 40 H 0.16 2.66 7.69 -2.39 -0.02 2.64 16 41 H 0.13 3.00 7.94 -2.39 -0.02 2.98 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.16 2.32 8.06 -2.92 -0.02 2.30 16 45 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 46 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 47 H 0.03 1.27 6.21 -2.39 -0.01 1.26 16 48 H 0.02 0.88 6.56 -2.39 -0.02 0.87 16 49 H 0.36 18.22 3.63 -92.70 -0.34 17.88 16 50 H 0.25 16.92 8.31 -92.71 -0.77 16.14 16 Total: -1.00 -93.88 395.94 5.37 -88.50 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.54 Total: 31.37 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.86 Total: -20.53 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -2.90 Total: -127.53 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.03 Total: -25.43 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.90 Total: 53.62 kcal Total: -93.88 5.37 -88.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319871285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.967 kcal (2) G-P(sol) polarization free energy of solvation -93.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds