Wall clock time and date at job start Wed Apr 1 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47485 * 2 1 4 4 O 1.21278 * 119.99566 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00250 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00103 * 179.97438 * 5 3 2 7 7 C 1.50705 * 109.46920 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99848 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.65092 * 359.94575 * 9 7 6 11 11 C 1.54902 * 104.83376 * 204.17175 * 10 9 7 12 12 H 1.09003 * 111.03591 * 81.07772 * 11 10 9 13 13 N 1.46895 * 111.00895 * 204.91165 * 11 10 9 14 14 C 1.46893 * 111.00318 * 267.20018 * 13 11 10 15 15 C 1.50708 * 109.47146 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99719 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99349 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00515 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99490 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00236 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47194 * 300.00675 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00238 * 22 20 18 26 26 C 1.55154 * 101.58416 * 322.99191 * 11 10 9 27 27 C 1.47028 * 125.64671 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.01252 * 298.38804 * 27 9 7 29 29 C 1.53003 * 109.87713 * 59.48040 * 27 9 7 30 30 H 1.09005 * 109.47661 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47440 * 300.00583 * 1 2 3 32 32 H 1.09005 * 109.46988 * 60.00328 * 1 2 3 33 33 H 1.08999 * 109.47086 * 239.99152 * 2 1 3 34 34 H 1.09002 * 109.46934 * 120.00205 * 2 1 3 35 35 H 0.97007 * 120.00035 * 359.97438 * 5 3 2 36 36 H 1.08990 * 109.47150 * 59.99812 * 6 5 3 37 37 H 1.08996 * 109.46826 * 299.99510 * 6 5 3 38 38 H 1.08995 * 110.36600 * 85.33103 * 10 9 7 39 39 H 1.08996 * 110.36294 * 323.01609 * 10 9 7 40 40 H 1.00899 * 111.00063 * 143.24194 * 13 11 10 41 41 H 1.09002 * 109.47091 * 59.99845 * 14 13 11 42 42 H 1.09000 * 109.47343 * 299.99463 * 14 13 11 43 43 H 0.96996 * 120.00564 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99781 * 179.97438 * 21 20 18 45 45 H 1.09005 * 110.72372 * 153.86337 * 26 11 10 46 46 H 1.09001 * 110.71985 * 277.14050 * 26 11 10 47 47 H 1.09003 * 109.46655 * 177.80494 * 29 27 9 48 48 H 1.08990 * 109.47287 * 297.80438 * 29 27 9 49 49 H 1.08996 * 109.47198 * 57.81090 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3425 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0482 -0.0011 7 6 5.3528 3.0481 -0.0010 8 8 5.9591 1.9977 0.0000 9 7 6.0267 4.2153 -0.0019 10 6 5.4190 5.5584 -0.0043 11 6 6.5006 6.4821 -0.6177 12 1 6.4962 6.4207 -1.7060 13 7 6.3229 7.8701 -0.1709 14 6 5.4973 8.6274 -1.1209 15 6 5.3369 10.0432 -0.6297 16 8 5.8587 10.3871 0.4098 17 7 4.6129 10.9266 -1.3450 18 6 4.4675 12.2146 -0.8983 19 1 4.9327 12.5212 0.0268 20 6 3.7214 13.1257 -1.6360 21 7 3.1557 12.7528 -2.7620 22 14 3.5227 14.8805 -1.0272 23 1 2.6885 15.6463 -1.9879 24 1 2.8637 14.8711 0.3036 25 1 4.8584 15.5192 -0.9135 26 6 7.8008 5.8712 -0.0316 27 6 7.4899 4.3599 -0.0014 28 1 7.9086 3.9130 0.9003 29 6 8.0801 3.6825 -1.2399 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.9878 0.9296 -0.0005 36 1 3.4828 3.5623 0.8888 37 1 3.4822 3.5617 -0.8911 38 1 5.1859 5.8711 1.0135 39 1 4.5195 5.5666 -0.6199 40 1 7.2143 8.3206 -0.0272 41 1 4.5167 8.1588 -1.2041 42 1 5.9809 8.6341 -2.0977 43 1 4.1953 10.6515 -2.1761 44 1 2.6346 13.3888 -3.2768 45 1 8.6511 6.0772 -0.6819 46 1 7.9838 6.2471 0.9750 47 1 9.1604 3.8272 -1.2531 48 1 7.8566 2.6161 -1.2120 49 1 7.6438 4.1218 -2.1369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331971920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:46 Heat of formation + Delta-G solvation = -135.276033 kcal Electronic energy + Delta-G solvation = -29242.899148 eV Core-core repulsion = 25010.530537 eV Total energy + Delta-G solvation = -4232.368611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.63711 -40.64775 -40.10478 -38.95554 -36.27571 -35.67563 -35.49901 -33.76555 -33.26333 -33.06890 -31.07695 -29.12018 -27.88878 -26.89181 -25.81054 -24.99822 -23.12244 -21.70568 -21.43198 -21.08247 -20.23339 -19.87834 -18.72501 -17.94136 -17.56035 -17.36326 -17.13991 -16.78570 -16.68219 -16.40652 -16.19162 -15.89035 -15.65885 -15.11366 -14.98684 -14.66068 -14.61722 -14.57359 -14.06656 -13.92733 -13.85346 -13.61784 -13.48260 -13.32875 -13.15842 -13.07070 -12.95980 -12.81139 -12.63827 -12.42044 -12.13539 -12.09587 -12.02589 -12.01628 -11.64418 -11.48472 -11.09911 -11.00627 -10.32615 -10.29158 -10.00141 -9.82243 -9.39340 -8.45471 -5.93909 1.36168 1.40613 1.42754 1.53191 1.56868 1.59216 2.07547 2.25946 2.31323 2.86111 3.22124 3.23421 3.42421 3.60007 3.68183 3.79492 3.99754 4.16759 4.21032 4.22100 4.28303 4.29569 4.30424 4.33914 4.38391 4.51619 4.58762 4.63585 4.66926 4.74204 4.86006 4.92560 4.98902 5.00360 5.06792 5.06870 5.16073 5.26103 5.36990 5.39463 5.42299 5.89116 6.09668 6.30093 6.38361 6.44568 6.61387 6.88451 7.14099 7.16920 7.58457 8.13378 8.71529 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.002148 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.585835 B =13031.208221 C =15245.007170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.507 3.493 4 O -0.585 6.585 5 N -0.715 5.715 6 C 0.103 3.897 7 C 0.530 3.470 8 O -0.562 6.562 9 N -0.605 5.605 10 C 0.103 3.897 11 C 0.078 3.922 12 H 0.076 0.924 13 N -0.667 5.667 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.123 4.123 27 C 0.137 3.863 28 H 0.077 0.923 29 C -0.156 4.156 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.354 0.646 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -26.192 0.534 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.296 3.704 4 O -0.465 6.465 5 N -0.371 5.371 6 C -0.024 4.024 7 C 0.319 3.681 8 O -0.442 6.442 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.033 4.033 12 H 0.094 0.906 13 N -0.301 5.301 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.161 4.161 27 C 0.034 3.966 28 H 0.095 0.905 29 C -0.214 4.214 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.631 -25.961 1.496 26.257 hybrid contribution 0.397 0.982 -0.849 1.357 sum 4.028 -24.980 0.647 25.311 Atomic orbital electron populations 1.21555 0.93422 1.02735 1.01918 1.21690 0.98105 0.90965 1.06790 1.21565 0.81175 0.93339 0.74339 1.90722 1.56271 1.48200 1.51286 1.45795 1.07782 1.08078 1.75428 1.21021 0.90098 0.86167 1.05128 1.20181 0.89654 0.82483 0.75798 1.90660 1.70329 1.31137 1.52026 1.48466 1.07906 1.05662 1.71831 1.22500 0.96863 0.80117 1.02575 1.22634 0.94969 0.87362 0.98303 0.90588 1.59892 1.21861 1.01316 1.47033 1.21618 1.00515 0.90130 0.94513 1.20887 0.82485 0.88419 0.85654 1.90499 1.53104 1.80671 1.26605 1.41939 1.46198 1.09831 1.23163 1.19622 1.31516 0.87319 1.07787 0.90239 1.26029 0.95780 1.03891 0.95667 1.69663 1.34014 1.37750 1.14699 0.85009 0.78463 0.76986 0.78023 1.19660 1.19810 1.19620 1.22919 0.97444 0.92279 1.03446 1.21623 0.79239 0.96237 0.99540 0.90534 1.22099 1.01844 1.00792 0.96701 0.89509 0.93546 0.93509 0.86356 0.86400 0.74302 0.88353 0.88067 0.90221 0.89499 0.82541 0.87765 0.91111 0.76978 0.91353 0.87805 0.89434 0.89789 0.92857 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 71.98 0.66 -1.11 16 2 C -0.14 -1.44 6.42 29.85 0.19 -1.25 16 3 C 0.51 9.68 7.83 87.66 0.69 10.37 16 4 O -0.58 -16.50 15.98 -3.02 -0.05 -16.55 16 5 N -0.72 -12.20 5.53 -466.81 -2.58 -14.78 16 6 C 0.10 1.90 5.16 85.63 0.44 2.35 16 7 C 0.53 10.63 7.70 87.66 0.67 11.30 16 8 O -0.56 -13.48 14.57 -3.03 -0.04 -13.52 16 9 N -0.61 -11.09 3.08 -788.05 -2.43 -13.52 16 10 C 0.10 1.90 6.39 86.85 0.55 2.45 16 11 C 0.08 1.44 3.38 46.30 0.16 1.60 16 12 H 0.08 1.28 7.83 -2.39 -0.02 1.27 16 13 N -0.67 -17.65 6.04 -488.43 -2.95 -20.59 16 14 C 0.06 1.96 6.03 85.56 0.52 2.48 16 15 C 0.44 19.72 7.82 87.66 0.69 20.41 16 16 O -0.62 -32.96 15.78 -3.05 -0.05 -33.01 16 17 N -0.57 -28.54 5.29 -306.98 -1.62 -30.17 16 18 C -0.33 -18.57 9.68 84.04 0.81 -17.75 16 19 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 22 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C -0.12 -1.85 5.89 31.78 0.19 -1.66 16 27 C 0.14 2.24 3.50 45.34 0.16 2.40 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 C -0.16 -2.39 9.05 71.98 0.65 -1.74 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 32 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.42 6.04 7.44 -92.70 -0.69 5.35 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.84 7.84 -2.39 -0.02 1.82 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.47 7.47 -2.39 -0.02 1.45 16 40 H 0.35 9.78 8.14 -89.69 -0.73 9.05 16 41 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 43 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.10 1.22 7.83 -2.38 -0.02 1.20 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.03 6.76 -2.39 -0.02 1.01 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -73.99 406.12 -1.73 -75.71 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -1.16 Total: 41.15 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 6.85 Total: 29.60 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -9.30 Total: -127.97 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -0.14 Total: -63.08 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -73.99 -1.73 -75.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331971920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.561 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds