Wall clock time and date at job start Wed Apr 1 2020 01:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.50696 * 114.26242 * 139.79733 * 6 5 4 8 8 O 1.21287 * 119.99934 * 266.46945 * 7 6 5 9 9 N 1.34774 * 120.00114 * 86.47751 * 7 6 5 10 10 C 1.46504 * 119.99975 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47101 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47104 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47196 * 54.99748 * 12 11 10 14 14 C 1.53001 * 109.47352 * 175.00055 * 12 11 10 15 15 N 1.46906 * 109.47051 * 294.99931 * 12 11 10 16 16 C 1.46898 * 111.00180 * 155.00077 * 15 12 11 17 17 C 1.50696 * 109.47269 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99890 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00072 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00118 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99661 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00073 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00247 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99912 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47097 * 89.99942 * 24 22 20 26 26 H 1.48501 * 109.46915 * 210.00207 * 24 22 20 27 27 H 1.48501 * 109.47003 * 329.99822 * 24 22 20 28 28 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 32 32 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 33 33 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 34 34 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 35 35 H 0.96998 * 120.00568 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.46676 * 299.99695 * 10 9 7 37 37 H 1.08994 * 109.47094 * 59.99482 * 10 9 7 38 38 H 1.09004 * 109.47165 * 299.99909 * 11 10 9 39 39 H 1.08994 * 109.47390 * 59.99883 * 11 10 9 40 40 H 1.09005 * 109.47190 * 59.99295 * 14 12 11 41 41 H 1.09000 * 109.47367 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.46793 * 299.99614 * 14 12 11 43 43 H 1.00899 * 110.99849 * 31.04396 * 15 12 11 44 44 H 1.08998 * 109.47230 * 300.00312 * 16 15 12 45 45 H 1.09002 * 109.47165 * 60.00027 * 16 15 12 46 46 H 0.97000 * 119.99946 * 0.02562 * 19 17 16 47 47 H 0.97002 * 119.99999 * 179.97438 * 23 22 20 48 48 H 1.08990 * 113.47221 * 321.86278 * 28 4 2 49 49 H 1.09005 * 113.46914 * 92.24556 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8798 -4.1036 -0.2090 8 8 4.7143 -4.0124 0.6665 9 7 3.5925 -5.3072 -0.7432 10 6 4.2883 -6.5051 -0.2667 11 6 3.7794 -7.7286 -1.0315 12 6 4.5065 -8.9796 -0.5342 13 1 4.3892 -9.0627 0.5462 14 6 3.9113 -10.2174 -1.2085 15 7 5.9342 -8.8803 -0.8656 16 6 6.7452 -9.6923 0.0514 17 6 8.2005 -9.5662 -0.3192 18 8 8.5297 -8.8681 -1.2549 19 7 9.1362 -10.2282 0.3897 20 6 10.4602 -10.1130 0.0529 21 1 10.7533 -9.4914 -0.7802 22 6 11.4248 -10.7959 0.7835 23 7 11.0682 -11.5518 1.7975 24 14 13.2287 -10.6396 0.3241 25 1 13.8310 -9.5013 1.0636 26 1 13.9406 -11.8933 0.6800 27 1 13.3486 -10.3998 -1.1365 28 6 3.5942 -1.5740 -0.0002 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5138 32 1 1.7665 -3.0226 1.0062 33 1 0.9552 -2.8281 -0.6064 34 1 3.1236 -2.8009 -1.7865 35 1 2.9250 -5.3803 -1.4432 36 1 5.3598 -6.3927 -0.4319 37 1 4.0968 -6.6371 0.7982 38 1 2.7079 -7.8408 -0.8659 39 1 3.9706 -7.5969 -2.0964 40 1 4.0285 -10.1342 -2.2891 41 1 4.4296 -11.1086 -0.8546 42 1 2.8520 -10.2910 -0.9626 43 1 6.2399 -7.9188 -0.8637 44 1 6.5984 -9.3423 1.0732 45 1 6.4412 -10.7365 -0.0222 46 1 8.8729 -10.7861 1.1383 47 1 11.7417 -12.0289 2.3073 48 1 4.2291 -0.9380 -0.6169 49 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567213963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:06 Heat of formation + Delta-G solvation = -73.691613 kcal Electronic energy + Delta-G solvation = -28530.200317 eV Core-core repulsion = 24300.502207 eV Total energy + Delta-G solvation = -4229.698110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34078 -39.60470 -38.54101 -37.93367 -37.12139 -34.94970 -33.88739 -31.89327 -31.49935 -31.08357 -29.71474 -28.62490 -26.52445 -26.43095 -24.76247 -23.88310 -22.67615 -20.93981 -20.16338 -19.50884 -19.24792 -18.03193 -17.85837 -17.44376 -16.67679 -16.29063 -16.13707 -15.75691 -15.73578 -15.29915 -15.14255 -14.64632 -14.48695 -13.98831 -13.81997 -13.68370 -13.58872 -13.43222 -13.21637 -13.09914 -12.95037 -12.87145 -12.52595 -12.42926 -12.20743 -11.89198 -11.72723 -11.60438 -11.43556 -11.31337 -11.25450 -11.05731 -10.82020 -10.49418 -10.37821 -10.20105 -10.10161 -9.49242 -9.42218 -9.26376 -8.44001 -8.08185 -7.94322 -6.40088 -3.80776 2.11849 2.17041 2.22384 2.83991 3.19531 3.28008 3.34035 3.62211 3.90890 3.92477 4.08808 4.23365 4.31470 4.41151 4.51101 4.57480 4.64226 4.73105 4.81470 4.87550 4.88870 4.91407 5.10138 5.11030 5.20300 5.26367 5.33964 5.34770 5.36792 5.49870 5.52554 5.66129 5.76158 5.79584 5.85058 5.98783 6.02447 6.07300 6.24214 6.33847 7.08130 7.17750 7.22246 7.56936 7.64594 7.65181 7.83841 8.08083 8.62959 9.19649 9.56064 10.07524 10.77642 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.001714 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.258215 B =16334.302639 C =17797.406440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.541 3.459 3 O -0.542 6.542 4 N -0.651 5.651 5 C 0.120 3.880 6 C -0.154 4.154 7 C 0.524 3.476 8 O -0.527 6.527 9 N -0.723 5.723 10 C 0.111 3.889 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.124 3.876 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.402 0.598 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.086 0.914 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.031 11.882 -3.164 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.332 3.668 3 O -0.419 6.419 4 N -0.388 5.388 5 C -0.004 4.004 6 C -0.176 4.176 7 C 0.308 3.692 8 O -0.403 6.403 9 N -0.375 5.375 10 C -0.013 4.013 11 C -0.170 4.170 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C 0.001 3.999 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.236 0.764 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.170 0.830 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.901 12.617 -3.505 29.023 hybrid contribution 0.434 -0.069 0.832 0.941 sum -25.467 12.548 -2.673 28.517 Atomic orbital electron populations 1.21839 0.90846 1.04938 1.04907 1.20435 0.90159 0.81154 0.75100 1.90759 1.70782 1.30203 1.50147 1.49672 1.09702 1.05398 1.73989 1.22938 0.96473 0.79870 1.01094 1.23208 0.97742 0.93991 1.02694 1.20057 0.82814 0.84057 0.82238 1.90788 1.32911 1.86020 1.30557 1.45953 1.43141 1.06961 1.41409 1.21533 0.97651 0.83294 0.98810 1.21979 1.00384 0.93191 1.01454 1.21456 0.88810 0.94491 0.97734 0.93737 1.21787 0.99058 0.97230 1.01646 1.60203 1.00503 1.16198 1.53185 1.21722 0.93416 0.99245 0.93885 1.19814 0.86531 0.85090 0.85972 1.90523 1.81891 1.43274 1.31084 1.41859 1.06261 1.42413 1.29488 1.19708 0.81287 1.27183 1.14706 0.87924 1.25256 1.00577 0.96269 0.95826 1.69612 1.35039 1.30246 1.19428 0.85858 0.81832 0.77532 0.79072 1.20425 1.20932 1.19416 1.22840 0.84034 0.91014 1.02010 0.88681 0.90185 0.88640 0.88886 0.89195 0.85217 0.76414 0.90718 0.91298 0.90604 0.89992 0.91845 0.92379 0.92892 0.82962 0.93841 0.89588 0.77476 0.91899 0.89517 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.18 36.01 0.37 -0.34 16 2 C 0.54 4.84 8.19 -10.98 -0.09 4.75 16 3 O -0.54 -7.51 17.88 5.56 0.10 -7.41 16 4 N -0.65 -4.81 3.69 -185.03 -0.68 -5.49 16 5 C 0.12 0.48 7.85 -8.36 -0.07 0.42 16 6 C -0.15 -0.86 4.51 -91.11 -0.41 -1.27 16 7 C 0.52 4.58 7.40 -10.99 -0.08 4.50 16 8 O -0.53 -7.23 15.95 5.55 0.09 -7.14 16 9 N -0.72 -4.92 5.56 -60.29 -0.33 -5.26 16 10 C 0.11 1.01 5.50 -4.04 -0.02 0.99 16 11 C -0.13 -1.02 4.92 -26.73 -0.13 -1.15 16 12 C 0.09 0.92 2.65 -67.71 -0.18 0.74 16 13 H 0.04 0.47 7.80 -51.93 -0.41 0.06 16 14 C -0.14 -1.38 9.41 37.16 0.35 -1.03 16 15 N -0.67 -10.18 5.93 -107.99 -0.64 -10.82 16 16 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 17 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 18 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 19 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.12 1.01 7.96 -8.49 -0.07 0.94 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.16 7.76 -51.93 -0.40 -0.24 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.09 0.10 7.96 -51.93 -0.41 -0.31 16 34 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 1.39 8.47 -40.82 -0.35 1.04 16 36 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.35 5.63 6.17 -39.29 -0.24 5.39 16 44 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 45 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 46 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.96 7.46 -51.93 -0.39 0.57 16 LS Contribution 411.26 15.07 6.20 6.20 Total: -1.00 -37.80 411.26 -8.01 -45.81 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.78 Total: 10.46 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -0.69 Total: 11.66 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.99 Total: -59.98 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: 0.28 Total: -30.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.80 -8.01 -45.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567213963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.878 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds