Wall clock time and date at job start Wed Apr 1 2020 01:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.50696 * 114.26242 * 139.79733 * 6 5 4 8 8 O 1.21287 * 119.99934 * 266.46945 * 7 6 5 9 9 N 1.34774 * 120.00114 * 86.47751 * 7 6 5 10 10 C 1.46504 * 119.99975 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47101 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47104 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47196 * 54.99748 * 12 11 10 14 14 C 1.53001 * 109.47352 * 175.00055 * 12 11 10 15 15 N 1.46906 * 109.47051 * 294.99931 * 12 11 10 16 16 C 1.46898 * 111.00180 * 155.00077 * 15 12 11 17 17 C 1.50696 * 109.47269 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99890 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00072 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00118 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99661 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00073 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00247 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99912 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47097 * 89.99942 * 24 22 20 26 26 H 1.48501 * 109.46915 * 210.00207 * 24 22 20 27 27 H 1.48501 * 109.47003 * 329.99822 * 24 22 20 28 28 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 32 32 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 33 33 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 34 34 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 35 35 H 0.96998 * 120.00568 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.46676 * 299.99695 * 10 9 7 37 37 H 1.08994 * 109.47094 * 59.99482 * 10 9 7 38 38 H 1.09004 * 109.47165 * 299.99909 * 11 10 9 39 39 H 1.08994 * 109.47390 * 59.99883 * 11 10 9 40 40 H 1.09005 * 109.47190 * 59.99295 * 14 12 11 41 41 H 1.09000 * 109.47367 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.46793 * 299.99614 * 14 12 11 43 43 H 1.00899 * 110.99849 * 31.04396 * 15 12 11 44 44 H 1.08998 * 109.47230 * 300.00312 * 16 15 12 45 45 H 1.09002 * 109.47165 * 60.00027 * 16 15 12 46 46 H 0.97000 * 119.99946 * 0.02562 * 19 17 16 47 47 H 0.97002 * 119.99999 * 179.97438 * 23 22 20 48 48 H 1.08990 * 113.47221 * 321.86278 * 28 4 2 49 49 H 1.09005 * 113.46914 * 92.24556 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8798 -4.1036 -0.2090 8 8 4.7143 -4.0124 0.6665 9 7 3.5925 -5.3072 -0.7432 10 6 4.2883 -6.5051 -0.2667 11 6 3.7794 -7.7286 -1.0315 12 6 4.5065 -8.9796 -0.5342 13 1 4.3892 -9.0627 0.5462 14 6 3.9113 -10.2174 -1.2085 15 7 5.9342 -8.8803 -0.8656 16 6 6.7452 -9.6923 0.0514 17 6 8.2005 -9.5662 -0.3192 18 8 8.5297 -8.8681 -1.2549 19 7 9.1362 -10.2282 0.3897 20 6 10.4602 -10.1130 0.0529 21 1 10.7533 -9.4914 -0.7802 22 6 11.4248 -10.7959 0.7835 23 7 11.0682 -11.5518 1.7975 24 14 13.2287 -10.6396 0.3241 25 1 13.8310 -9.5013 1.0636 26 1 13.9406 -11.8933 0.6800 27 1 13.3486 -10.3998 -1.1365 28 6 3.5942 -1.5740 -0.0002 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5138 32 1 1.7665 -3.0226 1.0062 33 1 0.9552 -2.8281 -0.6064 34 1 3.1236 -2.8009 -1.7865 35 1 2.9250 -5.3803 -1.4432 36 1 5.3598 -6.3927 -0.4319 37 1 4.0968 -6.6371 0.7982 38 1 2.7079 -7.8408 -0.8659 39 1 3.9706 -7.5969 -2.0964 40 1 4.0285 -10.1342 -2.2891 41 1 4.4296 -11.1086 -0.8546 42 1 2.8520 -10.2910 -0.9626 43 1 6.2399 -7.9188 -0.8637 44 1 6.5984 -9.3423 1.0732 45 1 6.4412 -10.7365 -0.0222 46 1 8.8729 -10.7861 1.1383 47 1 11.7417 -12.0289 2.3073 48 1 4.2291 -0.9380 -0.6169 49 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567213963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:03 Heat of formation + Delta-G solvation = -105.799718 kcal Electronic energy + Delta-G solvation = -28531.592629 eV Core-core repulsion = 24300.502207 eV Total energy + Delta-G solvation = -4231.090422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.95116 -40.39765 -40.15978 -38.77359 -38.18670 -36.06622 -35.68722 -33.33599 -32.70372 -32.18547 -30.36620 -29.19812 -28.06157 -27.00947 -25.96335 -25.12432 -23.38705 -21.69882 -21.16955 -20.87738 -20.05447 -19.92644 -18.67031 -18.02786 -17.82918 -17.29773 -17.02745 -16.78287 -16.61737 -16.43457 -16.24547 -16.07731 -15.65938 -15.31653 -15.24942 -14.69857 -14.32541 -14.21737 -14.05602 -14.00859 -13.63884 -13.51993 -13.46683 -13.33823 -13.23361 -13.11468 -12.97468 -12.87264 -12.56279 -12.43216 -12.22392 -12.16465 -12.11288 -11.85486 -11.70764 -11.51787 -11.25240 -10.82948 -10.35008 -10.14493 -10.02591 -9.89901 -9.30132 -8.47765 -5.96567 1.36923 1.40553 1.47407 1.50654 1.53425 1.65910 2.04294 2.22791 2.28401 2.94831 3.08186 3.19416 3.46642 3.52507 3.74827 3.85656 3.91548 4.02595 4.11624 4.17659 4.28813 4.31191 4.43070 4.45881 4.49603 4.51537 4.57758 4.58122 4.63794 4.64220 4.68956 4.73238 4.97790 5.00409 5.05011 5.08077 5.09923 5.24727 5.39765 5.40786 5.51116 5.91802 6.14903 6.43893 6.52284 6.59121 6.62447 7.01326 7.11517 7.22940 7.55134 8.10627 8.69609 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.001714 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.258215 B =16334.302639 C =17797.406440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.530 3.470 3 O -0.606 6.606 4 N -0.651 5.651 5 C 0.131 3.869 6 C -0.135 4.135 7 C 0.523 3.477 8 O -0.585 6.585 9 N -0.704 5.704 10 C 0.114 3.886 11 C -0.117 4.117 12 C 0.081 3.919 13 H 0.052 0.948 14 C -0.136 4.136 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.106 3.894 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.423 0.577 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.341 0.659 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.073 0.927 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.157 10.741 -3.748 32.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.323 3.677 3 O -0.488 6.488 4 N -0.386 5.386 5 C 0.009 3.991 6 C -0.157 4.157 7 C 0.309 3.691 8 O -0.465 6.465 9 N -0.356 5.356 10 C -0.010 4.010 11 C -0.154 4.154 12 C -0.029 4.029 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.018 4.018 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.261 0.739 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.161 0.839 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.107 11.403 -4.106 31.530 hybrid contribution 1.390 0.264 1.016 1.742 sum -27.718 11.667 -3.090 30.232 Atomic orbital electron populations 1.21870 0.86767 1.06586 1.06243 1.21416 0.92038 0.80475 0.73765 1.90725 1.72341 1.32526 1.53163 1.49795 1.09267 1.06725 1.72791 1.23121 0.96957 0.77134 1.01901 1.23151 0.97997 0.90600 1.03957 1.20580 0.82043 0.85213 0.81299 1.90774 1.35595 1.86851 1.33290 1.45761 1.42821 1.05754 1.41296 1.21358 0.95989 0.84820 0.98874 1.21885 1.01935 0.90716 1.00906 1.21656 0.86160 0.96513 0.98525 0.93011 1.21783 1.00751 0.95932 1.00946 1.60252 1.02822 1.15387 1.53049 1.21570 0.89155 1.00898 0.95127 1.20954 0.88863 0.83208 0.84633 1.90486 1.83226 1.44632 1.32740 1.41935 1.05976 1.43108 1.30024 1.19671 0.83147 1.28506 1.15214 0.90417 1.26035 1.04334 0.95408 0.95437 1.69669 1.36493 1.30189 1.19663 0.84932 0.76825 0.78127 0.78470 1.19778 1.19330 1.19799 1.22847 0.84969 0.92763 1.01192 0.87297 0.86878 0.88639 0.88683 0.84522 0.82359 0.73916 0.94313 0.91996 0.86822 0.89875 0.92594 0.93787 0.89727 0.83882 0.92044 0.87787 0.76983 0.91276 0.90894 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.18 71.24 0.73 -0.19 16 2 C 0.53 9.15 8.19 87.66 0.72 9.86 16 3 O -0.61 -17.58 17.88 -3.02 -0.05 -17.63 16 4 N -0.65 -8.86 3.69 -857.69 -3.16 -12.02 16 5 C 0.13 0.63 7.85 83.27 0.65 1.28 16 6 C -0.14 -1.26 4.51 -11.11 -0.05 -1.31 16 7 C 0.52 8.68 7.40 87.66 0.65 9.33 16 8 O -0.59 -16.74 15.95 -3.05 -0.05 -16.79 16 9 N -0.70 -8.05 5.56 -463.06 -2.57 -10.62 16 10 C 0.11 1.95 5.50 86.38 0.48 2.42 16 11 C -0.12 -1.46 4.92 30.59 0.15 -1.31 16 12 C 0.08 1.55 2.65 44.91 0.12 1.67 16 13 H 0.05 0.95 7.80 -2.39 -0.02 0.93 16 14 C -0.14 -2.32 9.41 71.98 0.68 -1.64 16 15 N -0.68 -20.45 5.93 -495.58 -2.94 -23.39 16 16 C 0.06 2.24 5.96 85.56 0.51 2.75 16 17 C 0.44 21.19 7.82 87.66 0.69 21.88 16 18 O -0.62 -35.38 15.78 -3.09 -0.05 -35.43 16 19 N -0.57 -30.06 5.29 -306.99 -1.62 -31.68 16 20 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 24 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 C 0.11 1.80 7.96 83.19 0.66 2.46 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 -0.09 7.76 -2.39 -0.02 -0.11 16 31 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 0.49 8.10 -2.39 -0.02 0.48 16 33 H 0.14 -0.52 7.96 -2.39 -0.02 -0.53 16 34 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.42 1.26 8.47 -92.71 -0.79 0.47 16 36 H 0.04 0.96 6.43 -2.39 -0.02 0.95 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.04 0.87 7.45 -2.39 -0.02 0.85 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.34 11.20 6.17 -89.69 -0.55 10.65 16 44 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 45 H 0.10 3.22 7.44 -2.39 -0.02 3.20 16 46 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.71 7.46 -2.38 -0.02 1.69 16 Total: -1.00 -88.99 411.26 -1.96 -90.95 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.08 Total: 32.47 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 7.26 Total: 28.31 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -10.01 Total: -127.65 kcal Atomic # 8 Polarization: -69.70 SS G_CDS: -0.15 Total: -69.85 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -88.99 -1.96 -90.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567213963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.851 kcal (2) G-P(sol) polarization free energy of solvation -88.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds