Wall clock time and date at job start Wed Apr 1 2020 01:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47132 * 2 1 4 4 C 1.53001 * 109.47050 * 240.00186 * 2 1 3 5 5 C 1.53001 * 109.47535 * 174.99840 * 4 2 1 6 6 N 1.46498 * 109.47307 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99768 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00177 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99835 * 179.97438 * 7 6 5 10 10 C 1.52994 * 110.53745 * 61.15543 * 9 7 6 11 11 C 1.54625 * 110.48670 * 183.77174 * 9 7 6 12 12 C 1.54475 * 101.76778 * 93.87754 * 11 9 7 13 13 N 1.46765 * 105.47162 * 25.41692 * 12 11 9 14 14 C 1.34415 * 111.30276 * 342.98261 * 13 12 11 15 15 O 1.21279 * 124.94588 * 180.37228 * 14 13 12 16 16 N 1.46894 * 109.47437 * 120.00344 * 2 1 3 17 17 C 1.46902 * 110.99895 * 274.99873 * 16 2 1 18 18 C 1.50703 * 109.46911 * 180.02562 * 17 16 2 19 19 O 1.21286 * 120.00261 * 0.02562 * 18 17 16 20 20 N 1.34787 * 119.99590 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99435 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00575 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99494 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99975 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00121 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47073 * 89.99758 * 25 23 21 27 27 H 1.48496 * 109.47091 * 210.00187 * 25 23 21 28 28 H 1.48506 * 109.46774 * 329.99940 * 25 23 21 29 29 H 1.08996 * 109.46782 * 299.99414 * 1 2 3 30 30 H 1.08996 * 109.47562 * 60.00098 * 1 2 3 31 31 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47215 * 54.99468 * 4 2 1 33 33 H 1.09004 * 109.47188 * 295.00158 * 4 2 1 34 34 H 1.08998 * 109.46735 * 59.99455 * 5 4 2 35 35 H 1.09004 * 109.46617 * 300.00332 * 5 4 2 36 36 H 0.96997 * 120.00205 * 359.97438 * 6 5 4 37 37 H 1.09001 * 109.47353 * 298.83913 * 10 9 7 38 38 H 1.08998 * 109.47359 * 58.84073 * 10 9 7 39 39 H 1.09005 * 109.46914 * 178.84301 * 10 9 7 40 40 H 1.08997 * 110.97133 * 212.00331 * 11 9 7 41 41 H 1.09005 * 110.96688 * 335.76156 * 11 9 7 42 42 H 1.09000 * 110.24792 * 266.41578 * 12 11 9 43 43 H 1.09001 * 110.24578 * 144.41689 * 12 11 9 44 44 H 0.97000 * 124.34894 * 163.00338 * 13 12 11 45 45 H 1.00901 * 111.00441 * 151.04532 * 16 2 1 46 46 H 1.09005 * 109.47157 * 299.99593 * 17 16 2 47 47 H 1.08998 * 109.47332 * 60.00090 * 17 16 2 48 48 H 0.96998 * 120.00070 * 359.97438 * 20 18 17 49 49 H 0.96999 * 120.00189 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3139 6 7 4.0530 -1.3033 -2.5104 7 6 5.3740 -1.3394 -2.7756 8 8 6.1584 -0.8003 -2.0241 9 6 5.8763 -2.0498 -4.0062 10 6 5.3032 -1.4049 -5.2697 11 6 7.4220 -2.0371 -4.0453 12 6 7.7651 -3.3874 -3.3782 13 7 6.5951 -4.2442 -3.6041 14 6 5.5186 -3.5188 -3.9526 15 8 4.4204 -3.9754 -4.1902 16 7 2.0197 -0.6925 1.1993 17 6 2.0826 0.2225 2.3468 18 6 2.5887 -0.5217 3.5556 19 8 2.8699 -1.6983 3.4695 20 7 2.7299 0.1207 4.7321 21 6 3.1898 -0.5565 5.8318 22 1 3.4394 -1.6044 5.7554 23 6 3.3359 0.1059 7.0446 24 7 3.7763 -0.5432 8.0989 25 14 2.9049 1.9187 7.1766 26 1 1.4758 2.0615 7.5543 27 1 3.7568 2.5559 8.2127 28 1 3.1394 2.5798 5.8677 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.9994 -1.0727 -0.4261 35 1 3.8531 0.4370 -1.3575 36 1 3.4257 -1.7349 -3.1113 37 1 4.2161 -1.4825 -5.2563 38 1 5.5920 -0.3544 -5.3045 39 1 5.6933 -1.9183 -6.1486 40 1 7.7859 -2.0057 -5.0723 41 1 7.8200 -1.2037 -3.4664 42 1 7.9306 -3.2490 -2.3097 43 1 8.6484 -3.8246 -3.8439 44 1 6.5983 -5.2100 -3.5132 45 1 2.9174 -1.1205 1.0286 46 1 2.7590 1.0461 2.1182 47 1 1.0872 0.6162 2.5526 48 1 2.5061 1.0620 4.8006 49 1 3.8779 -0.0809 8.9456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567231003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:46 Heat of formation + Delta-G solvation = -108.358116 kcal Electronic energy + Delta-G solvation = -29752.795951 eV Core-core repulsion = 25521.594588 eV Total energy + Delta-G solvation = -4231.201363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60388 -39.30004 -38.60130 -37.34985 -36.70266 -34.92692 -33.94123 -33.64235 -31.74655 -31.38926 -29.49806 -28.77988 -26.59743 -25.98929 -24.28218 -23.50400 -22.39205 -21.88497 -20.62853 -19.67414 -19.31861 -18.33018 -17.96817 -17.70385 -16.58046 -16.19631 -15.91465 -15.60948 -15.49199 -15.29015 -14.92573 -14.70829 -14.34518 -14.17379 -14.07081 -13.93036 -13.63629 -13.34930 -13.14102 -13.02679 -12.86294 -12.69950 -12.62314 -12.26474 -12.15558 -11.96859 -11.86480 -11.73398 -11.64390 -11.36870 -11.30056 -11.15981 -10.84490 -10.57023 -10.39839 -10.03916 -9.94799 -9.56333 -9.54412 -9.35118 -8.54388 -8.17020 -8.11732 -6.28285 -3.79480 1.89701 2.29899 2.78694 2.96568 3.04826 3.09013 3.16891 3.69841 3.77577 3.90139 4.09713 4.13717 4.17381 4.41523 4.53623 4.57786 4.80911 4.82280 4.84663 4.95474 5.06426 5.14150 5.17063 5.24166 5.31826 5.35840 5.41130 5.48769 5.53812 5.58205 5.62975 5.71737 5.78852 5.82905 5.90086 5.96823 6.02041 6.13075 6.25895 6.30290 6.50318 7.13498 7.16127 7.59607 7.61793 7.73134 7.85164 8.17670 8.62999 8.98063 9.45548 9.86222 10.84961 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002224 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.368116 B =12584.334690 C =13572.915850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.045 0.955 4 C -0.134 4.134 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.533 3.467 8 O -0.525 6.525 9 C -0.120 4.120 10 C -0.128 4.128 11 C -0.118 4.118 12 C 0.097 3.903 13 N -0.725 5.725 14 C 0.532 3.468 15 O -0.520 6.520 16 N -0.666 5.666 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.415 0.585 45 H 0.350 0.650 46 H 0.045 0.955 47 H 0.088 0.912 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 2.054 -29.827 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.063 0.937 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.317 3.683 8 O -0.401 6.401 9 C -0.127 4.127 10 C -0.186 4.186 11 C -0.156 4.156 12 C -0.028 4.028 13 N -0.381 5.381 14 C 0.316 3.684 15 O -0.395 6.395 16 N -0.301 5.301 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.254 0.746 45 H 0.172 0.828 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.203 0.797 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.075 1.272 -29.049 29.238 hybrid contribution 0.274 1.345 -0.016 1.372 sum 3.349 2.616 -29.065 29.374 Atomic orbital electron populations 1.21786 0.94161 1.02657 1.01116 1.21455 0.96329 0.95711 0.88853 0.93702 1.21993 0.93522 1.03109 0.98551 1.21531 0.94529 0.97444 0.87617 1.45944 1.07367 1.56526 1.27148 1.19678 0.82655 0.80300 0.85716 1.90738 1.55176 1.45590 1.48581 1.21642 0.99229 0.94719 0.97136 1.21675 1.01969 1.01095 0.93812 1.22730 0.91178 0.98812 1.02894 1.22189 0.88354 0.90318 1.01904 1.46150 1.11670 1.10360 1.69880 1.20297 0.84185 0.88151 0.75807 1.90773 1.22594 1.76543 1.49608 1.60187 1.35063 1.32040 1.02805 1.21765 1.01315 0.94053 0.91438 1.19727 0.84453 0.88222 0.83998 1.90565 1.53738 1.15919 1.84351 1.42209 1.60252 1.11016 1.09628 1.19435 1.40179 0.97923 0.85733 0.86307 1.25040 0.97516 0.98410 0.95245 1.69621 1.45243 1.36571 1.00802 0.86665 0.79287 0.84965 0.78436 1.19611 1.20209 1.19514 0.92448 0.92806 0.91727 0.90463 0.89850 0.90821 0.91191 0.75797 0.90948 0.90724 0.90879 0.89044 0.87071 0.90136 0.89582 0.74575 0.82816 0.93734 0.89420 0.79704 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.42 37.16 0.35 -1.11 16 2 C 0.09 0.99 2.65 -67.71 -0.18 0.81 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16 4 C -0.13 -1.28 4.92 -26.73 -0.13 -1.41 16 5 C 0.11 1.23 5.50 -4.04 -0.02 1.20 16 6 N -0.72 -7.34 5.42 -60.29 -0.33 -7.67 16 7 C 0.53 5.97 6.55 -10.98 -0.07 5.90 16 8 O -0.53 -7.53 15.46 5.56 0.09 -7.44 16 9 C -0.12 -1.00 0.74 -155.67 -0.12 -1.11 16 10 C -0.13 -0.77 8.33 37.15 0.31 -0.47 16 11 C -0.12 -0.73 6.05 -25.10 -0.15 -0.88 16 12 C 0.10 0.57 7.78 -3.12 -0.02 0.55 16 13 N -0.73 -5.48 6.24 -59.20 -0.37 -5.85 16 14 C 0.53 5.26 7.08 -10.86 -0.08 5.19 16 15 O -0.52 -6.64 17.69 5.56 0.10 -6.54 16 16 N -0.67 -10.44 5.93 -107.99 -0.64 -11.08 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.45 10.51 7.82 -10.98 -0.09 10.42 16 19 O -0.56 -15.57 15.78 5.55 0.09 -15.49 16 20 N -0.59 -14.43 5.09 -10.96 -0.06 -14.49 16 21 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 22 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.17 13.96 55.50 0.77 -25.40 16 25 Si 0.88 19.69 27.74 -169.99 -4.71 14.97 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.50 6.52 56.52 0.37 -5.14 16 29 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.41 3.63 7.86 -40.82 -0.32 3.30 16 37 H 0.07 0.45 7.77 -51.93 -0.40 0.05 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 40 H 0.09 0.35 7.90 -51.93 -0.41 -0.06 16 41 H 0.11 0.81 6.91 -51.93 -0.36 0.45 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.41 2.54 8.96 -40.82 -0.37 2.17 16 45 H 0.35 5.86 6.17 -39.29 -0.24 5.62 16 46 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 47 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16 48 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -37.08 399.96 -7.14 -44.22 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -7.63 Total: 16.77 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -0.48 Total: 11.96 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.62 Total: -64.49 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: 0.27 Total: -29.47 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.08 -7.14 -44.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567231003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.138 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds