Wall clock time and date at job start Wed Apr 1 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46807 * 2 1 4 4 O 1.21284 * 120.00030 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00368 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47456 * 180.02562 * 6 5 3 8 8 O 1.21288 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00372 * 179.97438 * 7 6 5 10 10 C 1.47748 * 125.81844 * 4.97941 * 9 7 6 11 11 C 1.54909 * 104.83966 * 155.82919 * 10 9 7 12 12 C 1.55154 * 101.58522 * 37.08597 * 11 10 9 13 13 C 1.47022 * 125.65127 * 185.06037 * 9 7 6 14 14 H 1.09002 * 109.88174 * 300.60329 * 13 9 7 15 15 C 1.52998 * 109.87874 * 61.61286 * 13 9 7 16 16 N 1.46906 * 109.47050 * 182.46241 * 15 13 9 17 17 C 1.46898 * 110.99763 * 185.06316 * 16 15 13 18 18 C 1.50705 * 109.46689 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99945 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99760 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00429 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99789 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99960 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00162 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47017 * 90.00216 * 25 23 21 27 27 H 1.48495 * 109.47194 * 210.00026 * 25 23 21 28 28 H 1.48495 * 109.46916 * 330.00466 * 25 23 21 29 29 H 1.09005 * 109.47406 * 60.00049 * 1 2 3 30 30 H 1.09001 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47782 * 299.99899 * 1 2 3 32 32 H 1.08996 * 109.47622 * 240.00788 * 2 1 3 33 33 H 1.08995 * 109.47341 * 119.99928 * 2 1 3 34 34 H 0.97007 * 119.99771 * 0.02562 * 5 3 2 35 35 H 1.09000 * 109.47027 * 60.00862 * 6 5 3 36 36 H 1.08996 * 109.47211 * 300.00310 * 6 5 3 37 37 H 1.08994 * 110.29363 * 37.01927 * 10 9 7 38 38 H 1.09004 * 110.42633 * 274.69961 * 10 9 7 39 39 H 1.09000 * 110.99934 * 279.01234 * 11 10 9 40 40 H 1.09000 * 111.03536 * 155.18209 * 11 10 9 41 41 H 1.09001 * 110.71656 * 206.13580 * 12 11 10 42 42 H 1.09002 * 110.86808 * 82.93426 * 12 11 10 43 43 H 1.09002 * 109.47515 * 302.46206 * 15 13 9 44 44 H 1.08999 * 109.47256 * 62.46107 * 15 13 9 45 45 H 1.00903 * 110.99549 * 61.10958 * 16 15 13 46 46 H 1.09001 * 109.47071 * 299.99454 * 17 16 15 47 47 H 1.08996 * 109.47737 * 60.00082 * 17 16 15 48 48 H 0.96997 * 120.00016 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3572 1.6673 0.0005 6 6 3.8455 3.0485 0.0011 7 6 5.3525 3.0486 0.0010 8 8 5.9590 1.9982 0.0000 9 7 6.0264 4.2158 0.0009 10 6 5.4251 5.5614 0.1049 11 6 6.5534 6.4572 0.6742 12 6 7.8035 5.8713 -0.0337 13 6 7.4854 4.3629 -0.1046 14 1 7.9711 3.8424 0.7208 15 6 7.9709 3.7908 -1.4380 16 7 9.4350 3.8888 -1.5088 17 6 9.9283 3.4594 -2.8241 18 6 11.4306 3.5741 -2.8591 19 8 12.0312 3.9737 -1.8840 20 7 12.1068 3.2317 -3.9735 21 6 13.4733 3.3365 -4.0055 22 1 14.0081 3.6931 -3.1376 23 6 14.1704 2.9839 -5.1546 24 7 15.4804 3.0849 -5.1855 25 14 13.2457 2.3665 -6.6556 26 1 12.8884 3.5166 -7.5246 27 1 14.1058 1.4223 -7.4131 28 1 12.0078 1.6700 -6.2225 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9876 0.9300 0.0005 35 1 3.4820 3.5620 0.8912 36 1 3.4825 3.5626 -0.8888 37 1 4.5745 5.5437 0.7862 38 1 5.1175 5.9176 -0.8782 39 1 6.6302 6.3485 1.7560 40 1 6.4012 7.5007 0.3983 41 1 8.7009 6.0488 0.5590 42 1 7.9149 6.2894 -1.0342 43 1 7.6726 2.7453 -1.5150 44 1 7.5289 4.3561 -2.2584 45 1 9.8691 3.3577 -0.7687 46 1 9.6384 2.4236 -3.0005 47 1 9.4978 4.0941 -3.5986 48 1 11.6266 2.9111 -4.7529 49 1 15.9670 2.8384 -5.9876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568135087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:37 Heat of formation + Delta-G solvation = -102.806785 kcal Electronic energy + Delta-G solvation = -29103.388458 eV Core-core repulsion = 24872.427819 eV Total energy + Delta-G solvation = -4230.960639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.85159 -39.88768 -38.50251 -37.92575 -35.40536 -34.85213 -33.88832 -33.23686 -32.13291 -31.67193 -30.52514 -28.40282 -27.00057 -25.00074 -24.44436 -23.34357 -22.56853 -21.24233 -20.80230 -19.65651 -19.24239 -18.35149 -17.96306 -17.21487 -16.76084 -16.47584 -16.23152 -15.80585 -15.61670 -15.33107 -15.07101 -14.80609 -14.34722 -14.03545 -13.99300 -13.83908 -13.69825 -13.44751 -13.18195 -13.11937 -12.80407 -12.73998 -12.56797 -12.43371 -12.17766 -12.05612 -11.82158 -11.71725 -11.59792 -11.51456 -11.20420 -10.99801 -10.94392 -10.59792 -10.36393 -10.30880 -9.97902 -9.62394 -9.57431 -9.09813 -8.58066 -8.19924 -8.14673 -6.31339 -3.82697 2.09956 2.22268 2.25550 2.90136 3.02609 3.06715 3.14853 3.73955 3.86986 4.09569 4.14441 4.26450 4.30201 4.50156 4.59391 4.64256 4.65531 4.81872 4.84749 4.85470 4.87773 5.04783 5.12509 5.13293 5.20873 5.28545 5.38423 5.44320 5.50200 5.55128 5.60940 5.64405 5.72293 5.76185 5.80509 5.82272 5.87360 5.92592 6.07802 6.12274 6.98674 7.03454 7.09867 7.52345 7.58075 7.64763 7.77627 8.14199 8.59575 8.94688 9.42267 9.82434 10.81756 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.001978 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.415019 B =14149.491609 C =15707.377674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.543 6.543 5 N -0.721 5.721 6 C 0.105 3.895 7 C 0.523 3.477 8 O -0.534 6.534 9 N -0.610 5.610 10 C 0.095 3.905 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.141 3.859 14 H 0.079 0.921 15 C 0.050 3.950 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.451 3.549 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.413 0.587 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.352 0.648 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.497 -0.404 9.713 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.420 6.420 5 N -0.377 5.377 6 C -0.023 4.023 7 C 0.311 3.689 8 O -0.411 6.411 9 N -0.345 5.345 10 C -0.028 4.028 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.038 3.962 14 H 0.097 0.903 15 C -0.081 4.081 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.237 3.763 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.251 0.749 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.171 0.829 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.203 0.797 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.153 0.533 10.093 30.855 hybrid contribution -0.288 -1.773 -1.365 2.256 sum -29.441 -1.240 8.728 30.733 Atomic orbital electron populations 1.21536 0.92790 1.01767 1.03385 1.21627 0.98736 0.93226 1.04756 1.20855 0.81421 0.92242 0.75360 1.90710 1.55287 1.46572 1.49424 1.45815 1.07823 1.08168 1.75932 1.21021 0.90798 0.85730 1.04736 1.20140 0.89423 0.82848 0.76468 1.90728 1.69783 1.30460 1.50082 1.48563 1.07986 1.05772 1.72164 1.22521 0.96990 0.81771 1.01473 1.22837 0.94511 0.99339 1.00763 1.22583 0.97896 0.92101 1.02456 1.21550 0.78958 0.97694 0.97988 0.90289 1.22247 0.89280 0.99724 0.96822 1.59985 1.03413 1.61737 1.04454 1.21682 0.95149 0.98998 0.92460 1.19683 0.88050 0.84165 0.84442 1.90562 1.69557 1.49539 1.34945 1.42204 1.07911 1.59805 1.13100 1.19434 0.79672 1.41949 1.02313 0.86261 1.25039 0.95502 0.97745 0.97874 1.69625 1.05784 1.47497 1.29215 0.86670 0.79770 0.79508 0.83434 1.19596 1.20178 1.19549 0.91933 0.91908 0.91950 0.88623 0.88649 0.74903 0.88488 0.88339 0.90346 0.90681 0.90551 0.89486 0.89217 0.89718 0.94213 0.91077 0.82898 0.93760 0.89553 0.79701 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.14 -0.78 6.42 -27.88 -0.18 -0.96 16 3 C 0.51 4.45 7.83 -10.99 -0.09 4.36 16 4 O -0.54 -6.51 15.98 5.55 0.09 -6.43 16 5 N -0.72 -5.81 5.53 -61.47 -0.34 -6.15 16 6 C 0.10 0.82 5.26 -5.20 -0.03 0.79 16 7 C 0.52 5.18 7.66 -10.99 -0.08 5.10 16 8 O -0.53 -7.00 14.86 5.55 0.08 -6.92 16 9 N -0.61 -5.40 3.08 -162.76 -0.50 -5.90 16 10 C 0.09 0.56 6.67 -2.35 -0.02 0.54 16 11 C -0.14 -0.81 7.08 -24.58 -0.17 -0.99 16 12 C -0.11 -0.99 6.22 -24.90 -0.15 -1.15 16 13 C 0.14 1.48 3.08 -66.96 -0.21 1.27 16 14 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.05 0.62 5.05 -3.82 -0.02 0.60 16 16 N -0.66 -10.15 5.83 -115.05 -0.67 -10.82 16 17 C 0.05 0.84 6.16 -4.97 -0.03 0.81 16 18 C 0.45 10.26 7.82 -10.98 -0.09 10.17 16 19 O -0.56 -15.08 15.78 5.54 0.09 -14.99 16 20 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 21 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 24 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 25 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.00 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.41 3.16 7.44 -40.82 -0.30 2.85 16 35 H 0.10 0.68 7.78 -51.93 -0.40 0.27 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.33 7.53 -51.93 -0.39 -0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 43 H 0.04 0.55 6.95 -51.93 -0.36 0.19 16 44 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 45 H 0.35 5.72 8.49 -39.29 -0.33 5.39 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 48 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 49 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -35.90 403.96 -8.03 -43.93 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.90 Total: 13.36 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -0.97 Total: 12.31 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.79 Total: -62.10 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: 0.26 Total: -28.33 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.90 -8.03 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568135087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.875 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds