Wall clock time and date at job start Wed Apr 1 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.53004 * 109.47525 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47360 * 184.99971 * 4 2 1 6 6 N 1.46905 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00095 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99386 * 359.97438 * 11 10 8 13 13 C 1.38941 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00397 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47309 * 89.99758 * 15 13 11 17 17 H 1.48496 * 109.47518 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.47255 * 329.99853 * 15 13 11 19 19 N 1.46500 * 109.47120 * 239.99886 * 2 1 3 20 20 C 1.34779 * 120.00042 * 85.00050 * 19 2 1 21 21 O 1.21276 * 119.99621 * 359.97438 * 20 19 2 22 22 C 1.50700 * 120.00130 * 179.97438 * 20 19 2 23 23 N 1.46499 * 109.47174 * 179.97438 * 22 20 19 24 24 C 1.46760 * 124.35121 * 269.72520 * 23 22 20 25 25 C 1.54660 * 105.38219 * 162.85390 * 24 23 22 26 26 C 1.54622 * 101.68309 * 25.76703 * 25 24 23 27 27 C 1.34419 * 124.34433 * 90.02727 * 23 22 20 28 28 O 1.21279 * 124.94689 * 0.42518 * 27 23 22 29 29 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47161 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47284 * 60.00507 * 1 2 3 32 32 H 1.09001 * 109.46514 * 64.99866 * 4 2 1 33 33 H 1.08998 * 109.46924 * 305.00346 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00433 * 5 4 2 35 35 H 1.08998 * 109.47408 * 300.00078 * 5 4 2 36 36 H 1.00901 * 110.99869 * 56.04956 * 6 5 4 37 37 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 38 38 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 39 39 H 0.96997 * 120.00713 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00755 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00031 * 264.99706 * 19 2 1 42 42 H 1.09003 * 109.47200 * 300.00282 * 22 20 19 43 43 H 1.09000 * 109.47091 * 59.99943 * 22 20 19 44 44 H 1.08990 * 110.24901 * 281.98739 * 24 23 22 45 45 H 1.09006 * 110.24241 * 43.98528 * 24 23 22 46 46 H 1.09000 * 111.19426 * 267.59690 * 25 24 23 47 47 H 1.09004 * 110.82219 * 143.78007 * 25 24 23 48 48 H 1.09004 * 110.49090 * 216.30562 * 26 25 24 49 49 H 1.08999 * 110.60021 * 93.72037 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5181 -1.2226 2.6083 8 6 5.9826 -1.9435 3.8475 9 8 5.1740 -2.4743 4.5794 10 7 7.2964 -1.9976 4.1430 11 6 7.7191 -2.6530 5.2706 12 1 6.9990 -3.1256 5.9223 13 6 9.0736 -2.7092 5.5750 14 7 9.4786 -3.3370 6.6561 15 14 10.3190 -1.8925 4.4475 16 1 10.5336 -0.4886 4.8814 17 1 11.6048 -2.6324 4.5116 18 1 9.8085 -1.9070 3.0531 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3572 21 8 1.8581 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 7 2.6985 0.2126 -4.7091 24 6 1.5902 0.4468 -5.6422 25 6 1.9207 1.7848 -6.3441 26 6 3.4618 1.8277 -6.2266 27 6 3.7660 0.9683 -5.0193 28 8 4.8198 0.9618 -4.4189 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4260 36 1 3.7452 -2.2665 2.5272 37 1 5.9666 -1.6858 1.7294 38 1 5.8196 -0.1765 2.6615 39 1 7.9431 -1.5729 3.5580 40 1 10.4242 -3.3759 6.8689 41 1 2.2490 -1.6317 -1.1526 42 1 3.6492 -1.1204 -3.3979 43 1 1.9777 -1.5509 -3.8325 44 1 1.5340 -0.3611 -6.3716 45 1 0.6497 0.5303 -5.0974 46 1 1.4661 2.6266 -5.8218 47 1 1.6095 1.7616 -7.3885 48 1 3.8037 2.8497 -6.0632 49 1 3.9263 1.4093 -7.1194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568601708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:32 Heat of formation + Delta-G solvation = -134.656999 kcal Electronic energy + Delta-G solvation = -29018.073567 eV Core-core repulsion = 24785.731800 eV Total energy + Delta-G solvation = -4232.341768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.64733 -40.52935 -40.29195 -38.02685 -37.40294 -36.32457 -35.75078 -33.99373 -33.77081 -32.61391 -30.45509 -28.47237 -28.35232 -27.90442 -25.63704 -23.52333 -22.84507 -22.47087 -21.64833 -21.29451 -20.46459 -20.25472 -18.53993 -17.98858 -17.83169 -17.40495 -17.21485 -16.89618 -16.67552 -16.39547 -15.93306 -15.77331 -15.43218 -15.13119 -14.99600 -14.82435 -14.73358 -14.58092 -14.48861 -14.09998 -13.87747 -13.82888 -13.67373 -13.38434 -13.34080 -13.00400 -12.96594 -12.83630 -12.43798 -12.30468 -12.28938 -12.10289 -11.99388 -11.91357 -11.81612 -11.54126 -11.17542 -10.93098 -10.48192 -10.27176 -10.13266 -9.76098 -9.36446 -8.43485 -6.04306 1.28651 1.33477 1.40565 1.42038 1.57644 1.88814 1.91829 2.20486 2.37499 2.66890 3.12512 3.33522 3.41847 3.62604 3.74916 3.87798 4.01137 4.05993 4.13142 4.15085 4.17390 4.21798 4.30797 4.38270 4.40826 4.47383 4.57778 4.65221 4.65749 4.70367 4.80213 4.87559 4.93549 5.06789 5.07291 5.16942 5.22511 5.29803 5.42087 5.50236 5.53771 5.87381 6.00112 6.04427 6.38900 6.51457 6.57141 6.85205 7.07625 7.22591 7.36845 7.92473 8.73934 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.001964 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.216223 B =14251.871369 C =15992.048888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.063 0.937 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.685 5.685 7 C 0.061 3.939 8 C 0.449 3.551 9 O -0.612 6.612 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.057 0.943 13 C -0.013 4.013 14 N -0.932 5.932 15 Si 0.963 3.037 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.234 1.234 19 N -0.711 5.711 20 C 0.492 3.508 21 O -0.576 6.576 22 C 0.103 3.897 23 N -0.606 5.606 24 C 0.100 3.900 25 C -0.121 4.121 26 C -0.150 4.150 27 C 0.503 3.497 28 O -0.589 6.589 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.348 0.652 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.389 0.611 40 H 0.280 0.720 41 H 0.415 0.585 42 H 0.110 0.890 43 H 0.154 0.846 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.124 0.876 48 H 0.097 0.903 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.225 7.568 -34.002 39.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.317 5.317 7 C -0.072 4.072 8 C 0.237 3.763 9 O -0.496 6.496 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.076 0.924 13 C -0.212 4.212 14 N -0.572 5.572 15 Si 0.783 3.217 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.157 1.157 19 N -0.365 5.365 20 C 0.278 3.722 21 O -0.455 6.455 22 C -0.023 4.023 23 N -0.338 5.338 24 C -0.022 4.022 25 C -0.159 4.159 26 C -0.190 4.190 27 C 0.293 3.707 28 O -0.470 6.470 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.224 0.776 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.171 0.829 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.143 0.857 48 H 0.116 0.884 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.402 8.457 -32.634 38.896 hybrid contribution 1.510 -0.710 -0.065 1.670 sum -17.892 7.747 -32.699 38.070 Atomic orbital electron populations 1.22065 0.93895 1.03020 1.02155 1.20833 0.94756 0.96391 0.83623 0.91921 1.21771 0.93959 1.02302 0.97139 1.22000 0.95860 0.98890 0.89820 1.60035 1.08525 1.22021 1.41163 1.21612 0.90060 1.01516 0.93974 1.20919 0.81959 0.84155 0.89272 1.90536 1.54103 1.51068 1.53907 1.42055 1.07042 1.50764 1.23428 1.19019 0.93218 1.32118 1.01480 0.92444 1.26079 0.99056 0.97589 0.98508 1.69791 1.17326 1.43213 1.26906 0.85391 0.77856 0.78987 0.79470 1.18319 1.19783 1.15738 1.46040 1.66756 1.14744 1.08948 1.21675 0.77059 0.87453 0.86006 1.90690 1.51452 1.17761 1.85616 1.21407 1.05334 0.92228 0.83357 1.48046 1.15926 1.41303 1.28563 1.22435 0.88911 0.99076 0.91740 1.22649 0.92795 0.96764 1.03695 1.22366 0.99318 1.00762 0.96540 1.21798 0.82588 0.80273 0.86064 1.90703 1.28627 1.68904 1.58730 0.90803 0.90984 0.93546 0.89510 0.89660 0.91883 0.94156 0.83288 0.90748 0.87563 0.77571 0.91088 0.74807 0.87221 0.82886 0.87673 0.90201 0.90795 0.85736 0.88434 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.15 2.40 2.57 44.99 0.12 2.51 16 3 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 4 C -0.11 -1.84 5.01 30.59 0.15 -1.69 16 5 C 0.06 1.33 5.57 86.30 0.48 1.81 16 6 N -0.68 -19.92 6.13 -517.93 -3.17 -23.09 16 7 C 0.06 1.94 6.17 85.56 0.53 2.47 16 8 C 0.45 20.68 7.82 87.66 0.69 21.37 16 9 O -0.61 -34.15 15.78 -3.07 -0.05 -34.19 16 10 N -0.59 -28.56 5.09 -306.99 -1.56 -30.13 16 11 C -0.33 -19.57 10.16 84.04 0.85 -18.72 16 12 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 13 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 14 N -0.93 -56.66 13.96 21.66 0.30 -56.36 16 15 Si 0.96 39.78 27.73 68.60 1.90 41.68 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 19 N -0.71 -9.46 4.53 -442.54 -2.00 -11.46 16 20 C 0.49 8.81 7.86 87.66 0.69 9.50 16 21 O -0.58 -15.63 16.09 -3.02 -0.05 -15.68 16 22 C 0.10 1.21 6.41 85.63 0.55 1.76 16 23 N -0.61 -8.74 2.42 -821.97 -1.99 -10.73 16 24 C 0.10 0.63 7.36 86.90 0.64 1.27 16 25 C -0.12 -0.64 7.19 31.71 0.23 -0.41 16 26 C -0.15 -1.61 6.86 30.59 0.21 -1.40 16 27 C 0.50 10.38 8.02 87.90 0.71 11.09 16 28 O -0.59 -18.43 17.59 -3.03 -0.05 -18.48 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 36 H 0.35 10.29 8.43 -89.69 -0.76 9.53 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.39 15.76 5.76 -92.71 -0.53 15.22 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.41 3.10 8.60 -92.71 -0.80 2.31 16 42 H 0.11 1.41 7.92 -2.39 -0.02 1.39 16 43 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.12 -0.15 8.14 -2.39 -0.02 -0.16 16 48 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -93.25 409.92 -0.85 -94.10 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -1.16 Total: 36.52 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 6.99 Total: 27.84 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -8.43 Total: -131.78 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: -0.15 Total: -68.36 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.90 Total: 41.68 kcal Total: -93.25 -0.85 -94.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568601708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.558 kcal (2) G-P(sol) polarization free energy of solvation -93.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds