Wall clock time and date at job start Wed Apr 1 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47149 * 2 1 4 4 C 1.53000 * 109.47159 * 239.99749 * 2 1 3 5 5 C 1.53003 * 109.46931 * 175.00070 * 4 2 1 6 6 N 1.46500 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00298 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99827 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47186 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.44002 * 56.08346 * 10 9 7 12 12 C 1.54861 * 110.60634 * 178.68655 * 10 9 7 13 13 C 1.54480 * 101.66110 * 93.93195 * 12 10 9 14 14 N 1.46760 * 105.54782 * 25.43666 * 13 12 10 15 15 C 1.34415 * 111.30303 * 342.93897 * 14 13 12 16 16 O 1.21288 * 124.94382 * 180.42984 * 15 14 13 17 17 N 1.46903 * 109.47020 * 119.99869 * 2 1 3 18 18 C 1.46895 * 111.00309 * 275.00560 * 17 2 1 19 19 C 1.50698 * 109.47316 * 180.02562 * 18 17 2 20 20 O 1.21288 * 120.00224 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00024 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99922 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00351 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99956 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99950 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00212 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47237 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47248 * 120.00317 * 26 24 22 29 29 H 1.48499 * 109.47407 * 240.00424 * 26 24 22 30 30 H 1.08995 * 109.47453 * 300.00017 * 1 2 3 31 31 H 1.09004 * 109.46974 * 60.00139 * 1 2 3 32 32 H 1.09001 * 109.47572 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46945 * 55.00322 * 4 2 1 34 34 H 1.08999 * 109.47533 * 294.99862 * 4 2 1 35 35 H 1.08999 * 109.47100 * 60.00347 * 5 4 2 36 36 H 1.09000 * 109.47265 * 300.00532 * 5 4 2 37 37 H 0.97000 * 119.99762 * 0.02562 * 6 5 4 38 38 H 1.09003 * 109.47625 * 60.00270 * 9 7 6 39 39 H 1.08999 * 109.47199 * 299.99665 * 9 7 6 40 40 H 1.08997 * 111.03764 * 335.83926 * 12 10 9 41 41 H 1.09000 * 110.99735 * 212.00821 * 12 10 9 42 42 H 1.09002 * 110.24746 * 266.39097 * 13 12 10 43 43 H 1.09002 * 110.24236 * 144.47820 * 13 12 10 44 44 H 0.97010 * 124.34794 * 162.95909 * 14 13 12 45 45 H 1.00901 * 110.99873 * 38.95443 * 17 2 1 46 46 H 1.09009 * 109.46465 * 299.99595 * 18 17 2 47 47 H 1.08994 * 109.47415 * 59.99095 * 18 17 2 48 48 H 0.97002 * 119.99987 * 359.97438 * 21 19 18 49 49 H 0.96996 * 120.00095 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3034 -2.5100 7 6 5.3740 -1.3387 -2.7758 8 8 6.1584 -0.7995 -2.0241 9 6 5.8762 -2.0481 -4.0068 10 6 7.4011 -1.9402 -4.0711 11 1 7.8494 -2.3339 -3.1589 12 6 7.9487 -2.6897 -5.3108 13 6 8.0319 -1.5517 -6.3521 14 7 8.1743 -0.3158 -5.5736 15 6 7.8215 -0.5036 -4.2902 16 8 7.8374 0.3540 -3.4327 17 7 2.0196 -0.6925 1.1995 18 6 2.0823 0.2225 2.3469 19 6 2.5883 -0.5216 3.5558 20 8 2.8687 -1.6985 3.4700 21 7 2.7293 0.1207 4.7322 22 6 3.1892 -0.5564 5.8321 23 1 3.4388 -1.6043 5.7557 24 6 3.3351 0.1060 7.0448 25 7 3.0318 1.3812 7.1377 26 14 3.9623 -0.8163 8.5432 27 1 4.2308 -2.2304 8.1775 28 1 5.2164 -0.1834 9.0250 29 1 2.9390 -0.7684 9.6182 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2618 -2.1369 34 1 1.7517 -1.7716 -1.2056 35 1 3.9994 -1.0728 -0.4259 36 1 3.8532 0.4369 -1.3572 37 1 3.4258 -1.7344 -3.1114 38 1 5.4414 -1.5881 -4.8942 39 1 5.5882 -3.0985 -3.9638 40 1 7.2563 -3.4661 -5.6360 41 1 8.9351 -3.1079 -5.1102 42 1 7.1202 -1.5188 -6.9487 43 1 8.8992 -1.6933 -6.9970 44 1 8.4831 0.5284 -5.9384 45 1 1.4495 -1.4979 1.4101 46 1 2.7588 1.0461 2.1183 47 1 1.0870 0.6163 2.5525 48 1 2.5055 1.0621 4.8008 49 1 3.1333 1.8435 7.9843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662929709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:37 Heat of formation + Delta-G solvation = -151.069499 kcal Electronic energy + Delta-G solvation = -29050.633105 eV Core-core repulsion = 24817.579638 eV Total energy + Delta-G solvation = -4233.053467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.61636 -40.31910 -40.09242 -38.30186 -37.37182 -36.06902 -35.66970 -33.80095 -33.33296 -32.54413 -30.38664 -29.28068 -27.97606 -26.88698 -25.77135 -23.95948 -22.59636 -22.01806 -21.47549 -21.10545 -20.62996 -19.93789 -18.47639 -17.93708 -17.68200 -17.15144 -16.96997 -16.80192 -16.46918 -16.41390 -16.11498 -15.83023 -15.49206 -15.27314 -14.86164 -14.80884 -14.54492 -14.32002 -14.18634 -14.04287 -13.58246 -13.57082 -13.51898 -13.34675 -13.10833 -12.96804 -12.85058 -12.66376 -12.43501 -12.27187 -12.16214 -12.10139 -12.09595 -11.85257 -11.73723 -11.53425 -10.87467 -10.56734 -10.36615 -10.03797 -9.99228 -9.95302 -9.24831 -8.48890 -5.97850 1.34582 1.39205 1.54142 1.65090 1.81409 2.02914 2.27420 2.31028 2.52945 2.93536 3.18094 3.46511 3.54016 3.57323 3.78622 3.89171 4.02565 4.15771 4.21982 4.22869 4.32140 4.43156 4.44798 4.48739 4.52827 4.57895 4.59691 4.70925 4.76187 4.81952 4.90472 4.96420 5.04576 5.14449 5.20194 5.24464 5.28095 5.32296 5.38768 5.59639 5.90374 6.02694 6.09632 6.13126 6.47831 6.57767 6.70889 7.10231 7.38410 7.48464 7.53715 8.09105 8.68918 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.001960 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.027327 B =14284.439375 C =15705.480326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.081 3.919 3 H 0.076 0.924 4 C -0.099 4.099 5 C 0.130 3.870 6 N -0.720 5.720 7 C 0.479 3.521 8 O -0.571 6.571 9 C -0.111 4.111 10 C -0.115 4.115 11 H 0.084 0.916 12 C -0.117 4.117 13 C 0.096 3.904 14 N -0.733 5.733 15 C 0.499 3.501 16 O -0.571 6.571 17 N -0.678 5.678 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.575 5.575 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.016 4.016 25 N -0.921 5.921 26 Si 0.995 3.005 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.267 1.267 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.417 0.583 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.411 0.589 45 H 0.346 0.654 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.396 0.604 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -6.830 -34.818 35.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 H 0.095 0.905 4 C -0.137 4.137 5 C 0.005 3.995 6 N -0.374 5.374 7 C 0.266 3.734 8 O -0.449 6.449 9 C -0.151 4.151 10 C -0.137 4.137 11 H 0.102 0.898 12 C -0.154 4.154 13 C -0.027 4.027 14 N -0.388 5.388 15 C 0.285 3.715 16 O -0.448 6.448 17 N -0.310 5.310 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.192 1.192 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.249 0.751 45 H 0.165 0.835 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.230 0.770 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.093 -6.676 -33.854 34.523 hybrid contribution -0.569 0.918 1.369 1.744 sum 0.525 -5.758 -32.485 32.995 Atomic orbital electron populations 1.22417 0.95079 1.02832 1.02955 1.21652 0.94000 0.97865 0.89339 0.90527 1.21666 0.92110 1.02334 0.97614 1.21074 0.95630 0.95565 0.87184 1.45890 1.07426 1.57181 1.26901 1.21661 0.82521 0.80572 0.88629 1.90882 1.56394 1.46328 1.51250 1.21622 0.93370 1.04522 0.95593 1.21803 0.96764 0.92964 1.02166 0.89811 1.22821 1.03857 0.97663 0.91106 1.22400 1.04555 0.81714 0.94028 1.46414 1.67551 1.14968 1.09914 1.21466 0.76084 0.91438 0.82473 1.90816 1.54528 1.50906 1.48574 1.60188 1.58722 1.09156 1.02978 1.21516 1.00846 0.95308 0.88921 1.20932 0.83389 0.88045 0.85169 1.90480 1.56621 1.18369 1.85444 1.41956 1.58380 1.12580 1.08292 1.19709 1.42148 0.95943 0.88546 0.90390 1.26090 0.97238 0.96685 1.01512 1.69683 1.48696 1.09698 1.28118 0.84843 0.78183 0.77972 0.77149 1.19809 1.19728 1.19208 0.93276 0.89772 0.91806 0.88118 0.90220 0.94098 0.94510 0.74615 0.85846 0.83654 0.85180 0.89224 0.88566 0.87995 0.75093 0.83507 0.88847 0.91341 0.77041 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.16 71.98 0.66 -2.40 16 2 C 0.08 1.84 2.59 44.91 0.12 1.96 16 3 H 0.08 1.79 7.80 -2.39 -0.02 1.77 16 4 C -0.10 -1.82 5.01 30.60 0.15 -1.67 16 5 C 0.13 3.48 5.56 86.38 0.48 3.96 16 6 N -0.72 -14.71 5.56 -463.06 -2.57 -17.28 16 7 C 0.48 12.31 7.61 87.66 0.67 12.97 16 8 O -0.57 -22.93 13.67 18.26 0.25 -22.68 16 9 C -0.11 -1.36 5.13 29.85 0.15 -1.21 16 10 C -0.11 -1.85 2.57 -10.72 -0.03 -1.88 16 11 H 0.08 1.85 8.02 -2.39 -0.02 1.83 16 12 C -0.12 -0.49 6.73 31.73 0.21 -0.28 16 13 C 0.10 0.32 7.78 86.83 0.68 1.00 16 14 N -0.73 -9.94 6.24 -459.81 -2.87 -12.81 16 15 C 0.50 12.22 7.39 87.90 0.65 12.87 16 16 O -0.57 -22.25 15.85 18.24 0.29 -21.96 16 17 N -0.68 -22.02 5.33 -495.59 -2.64 -24.66 16 18 C 0.07 2.45 5.96 85.56 0.51 2.96 16 19 C 0.44 22.14 7.82 87.66 0.69 22.83 16 20 O -0.62 -36.39 15.78 -3.05 -0.05 -36.44 16 21 N -0.57 -31.29 5.29 -306.99 -1.62 -32.91 16 22 C -0.33 -19.94 9.68 84.04 0.81 -19.12 16 23 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 24 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 25 N -0.92 -51.82 13.05 21.66 0.28 -51.53 16 26 Si 1.00 44.91 29.55 68.60 2.03 46.93 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 30 H 0.05 0.96 7.45 -2.39 -0.02 0.95 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.42 4.44 8.47 -92.71 -0.79 3.65 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.13 -0.35 7.91 -2.39 -0.02 -0.36 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.41 4.90 8.96 -92.70 -0.83 4.07 16 45 H 0.35 11.52 8.17 -89.69 -0.73 10.79 16 46 H 0.09 3.31 8.06 -2.38 -0.02 3.29 16 47 H 0.07 2.18 7.44 -2.39 -0.02 2.16 16 48 H 0.40 20.50 7.90 -92.71 -0.73 19.76 16 49 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -97.14 404.93 -2.76 -99.91 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -2.08 Total: 41.86 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 6.22 Total: 31.57 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -9.42 Total: -139.20 kcal Atomic # 8 Polarization: -81.57 SS G_CDS: 0.49 Total: -81.08 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -97.14 -2.76 -99.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662929709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.164 kcal (2) G-P(sol) polarization free energy of solvation -97.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds