Wall clock time and date at job start Wed Apr 1 2020 00:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00226 * 2 1 4 4 N 1.34782 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00299 * 179.97438 * 4 2 1 6 6 C 1.50696 * 109.46914 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00304 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99820 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00439 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47587 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99823 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99783 * 179.97438 * 10 9 8 13 13 C 1.46988 * 120.61688 * 5.10596 * 12 10 9 14 14 C 1.53195 * 108.73868 * 126.38335 * 13 12 10 15 15 C 1.53038 * 109.33749 * 54.62402 * 14 13 12 16 16 H 1.09000 * 109.46548 * 58.62431 * 15 14 13 17 17 N 1.46506 * 109.45897 * 178.59742 * 15 14 13 18 18 C 1.36938 * 120.00100 * 274.99832 * 17 15 14 19 19 H 1.08000 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00140 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47181 * 59.99043 * 22 20 18 24 24 H 1.48493 * 109.47453 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46899 * 299.99726 * 22 20 18 26 26 C 1.53041 * 109.53726 * 298.61373 * 15 14 13 27 27 C 1.46928 * 120.62865 * 185.07771 * 12 10 9 28 28 H 1.08993 * 109.58758 * 113.84603 * 27 12 10 29 29 C 1.53009 * 109.70086 * 353.49039 * 27 12 10 30 30 H 1.09003 * 109.47075 * 239.99576 * 1 2 3 31 31 H 1.09000 * 109.47117 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47067 * 120.00176 * 1 2 3 33 33 H 0.96998 * 119.99470 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.46865 * 60.00341 * 5 4 2 35 35 H 1.09000 * 109.46861 * 300.00192 * 5 4 2 36 36 H 0.96999 * 120.00240 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.46910 * 59.99155 * 9 8 6 38 38 H 1.09008 * 109.46679 * 300.00198 * 9 8 6 39 39 H 1.09000 * 109.63038 * 6.58927 * 13 12 10 40 40 H 1.09006 * 109.57832 * 246.14660 * 13 12 10 41 41 H 1.08996 * 109.49809 * 294.65309 * 14 13 12 42 42 H 1.09002 * 109.49620 * 174.58665 * 14 13 12 43 43 H 0.96997 * 119.99925 * 94.99648 * 17 15 14 44 44 H 0.96999 * 120.00133 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.49981 * 181.31920 * 26 15 14 46 46 H 1.09001 * 109.49831 * 301.41571 * 26 15 14 47 47 H 1.08993 * 109.47123 * 304.20802 * 29 27 12 48 48 H 1.09000 * 109.46947 * 64.21254 * 29 27 12 49 49 H 1.09008 * 109.46828 * 184.20913 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0001 7 8 3.3601 -3.5098 0.0011 8 7 5.4733 -2.8342 0.0001 9 6 5.9617 -4.2154 0.0008 10 6 7.4687 -4.2154 0.0001 11 8 8.0751 -3.1651 -0.0004 12 7 8.1425 -5.3827 0.0011 13 6 7.4256 -6.6611 -0.1097 14 6 8.0234 -7.4615 -1.2711 15 6 9.5332 -7.6030 -1.0649 16 1 9.7249 -8.1020 -0.1150 17 7 10.1026 -8.3967 -2.1568 18 6 10.0970 -9.7641 -2.0844 19 1 9.6732 -10.2575 -1.2222 20 6 10.6370 -10.5161 -3.1187 21 7 11.1540 -9.9148 -4.1692 22 14 10.6288 -12.3815 -3.0203 23 1 9.2287 -12.8656 -2.9177 24 1 11.2585 -12.9444 -4.2416 25 1 11.3921 -12.8174 -1.8234 26 6 10.1801 -6.2161 -1.0516 27 6 9.6075 -5.4012 0.1123 28 1 9.8964 -5.8611 1.0573 29 6 10.1475 -3.9709 0.0516 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6959 -2.0072 0.0005 34 1 4.0095 -0.6528 0.8895 35 1 4.0089 -0.6539 -0.8905 36 1 6.1036 -2.0970 -0.0003 37 1 5.5983 -4.7298 -0.8888 38 1 5.5984 -4.7288 0.8912 39 1 6.3691 -6.4730 -0.3011 40 1 7.5367 -7.2237 0.8173 41 1 7.8315 -6.9403 -2.2090 42 1 7.5665 -8.4506 -1.3044 43 1 10.4836 -7.9535 -2.9310 44 1 11.5310 -10.4403 -4.8921 45 1 11.2582 -6.3187 -0.9282 46 1 9.9680 -5.7067 -1.9916 47 1 9.8004 -3.4900 -0.8628 48 1 9.7897 -3.4105 0.9154 49 1 11.2374 -3.9934 0.0592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671232860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:15 Heat of formation + Delta-G solvation = -83.893074 kcal Electronic energy + Delta-G solvation = -29511.228764 eV Core-core repulsion = 25281.088285 eV Total energy + Delta-G solvation = -4230.140479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93818 -40.32613 -39.37300 -37.62849 -35.19298 -34.75692 -34.61640 -32.86898 -32.02532 -31.00882 -29.58368 -28.75607 -27.14622 -26.36444 -24.34928 -23.02872 -22.04322 -21.03616 -20.99647 -20.30041 -19.34735 -18.15790 -17.21154 -17.13000 -16.88444 -16.59443 -16.25219 -16.00986 -15.87236 -15.31430 -15.07788 -14.88840 -14.22583 -14.07191 -13.92453 -13.76073 -13.59264 -13.40526 -13.29331 -13.10636 -12.98755 -12.87158 -12.54082 -12.40986 -12.19179 -12.17468 -11.67901 -11.49133 -10.94989 -10.89628 -10.87942 -10.52954 -10.51017 -10.40128 -10.32360 -9.93496 -9.77331 -9.70414 -9.55458 -9.22449 -8.97076 -8.59622 -7.04791 -5.83150 -3.12966 2.05987 2.21237 2.22881 2.38040 2.82098 3.13612 3.38902 3.43667 3.44863 4.14297 4.22272 4.42793 4.51674 4.80024 4.82191 4.88416 4.93243 4.94952 4.99309 5.05225 5.06221 5.17084 5.25294 5.38419 5.39761 5.46992 5.54546 5.70472 5.76523 5.82792 5.85161 5.91606 6.04013 6.17450 6.24371 6.34948 6.37076 6.44719 6.63434 6.79820 6.95061 6.97534 7.04133 7.30038 7.62121 7.64798 7.76015 7.95972 8.34783 9.46111 10.02838 10.37346 11.39115 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.001881 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.154649 B =14882.947725 C =15826.122865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.721 5.721 5 C 0.100 3.900 6 C 0.512 3.488 7 O -0.539 6.539 8 N -0.710 5.710 9 C 0.097 3.903 10 C 0.509 3.491 11 O -0.538 6.538 12 N -0.595 5.595 13 C 0.103 3.897 14 C -0.152 4.152 15 C 0.178 3.822 16 H 0.048 0.952 17 N -0.723 5.723 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.135 4.135 27 C 0.147 3.853 28 H 0.073 0.927 29 C -0.134 4.134 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.413 0.587 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.415 0.585 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 16.585 11.107 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.377 5.377 5 C -0.027 4.027 6 C 0.298 3.702 7 O -0.416 6.416 8 N -0.365 5.365 9 C -0.030 4.030 10 C 0.297 3.703 11 O -0.417 6.417 12 N -0.328 5.328 13 C -0.020 4.020 14 C -0.193 4.193 15 C 0.068 3.932 16 H 0.066 0.934 17 N -0.363 5.363 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.174 4.174 27 C 0.044 3.956 28 H 0.091 0.909 29 C -0.192 4.192 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.251 0.749 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.142 17.000 11.129 25.951 hybrid contribution 0.224 -1.311 -0.381 1.384 sum -15.918 15.689 10.748 24.800 Atomic orbital electron populations 1.21902 0.90977 1.05714 1.04622 1.20865 0.90846 0.82949 0.75316 1.90744 1.70867 1.31410 1.49499 1.45793 1.05839 1.10109 1.75964 1.21017 0.82553 0.93857 1.05302 1.20472 0.82351 0.91270 0.76119 1.90720 1.55155 1.45871 1.49896 1.45600 1.07127 1.08982 1.74818 1.21224 0.92321 0.84489 1.04969 1.20323 0.89187 0.84110 0.76717 1.90752 1.68391 1.31705 1.50833 1.48181 1.07677 1.05878 1.71050 1.21987 0.95778 0.83748 1.00492 1.22696 1.00256 0.99806 0.96541 1.20166 0.90070 0.89939 0.93031 0.93378 1.42413 1.70636 1.03068 1.20216 1.19178 1.32911 0.82519 1.02811 0.91193 1.24753 1.01259 0.97949 0.96829 1.69649 1.44915 1.34409 1.08962 0.86278 0.77573 0.85568 0.76801 1.21258 1.21694 1.21243 1.22306 1.00829 0.96539 0.97740 1.21382 0.77589 0.97754 0.98891 0.90873 1.22195 0.98709 0.94007 1.04249 0.89149 0.88738 0.89119 0.74874 0.88039 0.88007 0.74658 0.88088 0.88199 0.90282 0.90954 0.92094 0.90363 0.78239 0.93399 0.90490 0.91727 0.91080 0.91455 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.32 36.00 0.37 -0.36 16 2 C 0.51 4.22 7.94 -10.98 -0.09 4.13 16 3 O -0.55 -6.79 17.09 5.56 0.09 -6.69 16 4 N -0.72 -5.28 5.53 -61.48 -0.34 -5.62 16 5 C 0.10 0.73 6.15 -5.20 -0.03 0.70 16 6 C 0.51 4.53 7.90 -10.99 -0.09 4.45 16 7 O -0.54 -6.19 15.67 5.56 0.09 -6.10 16 8 N -0.71 -6.08 5.53 -61.47 -0.34 -6.41 16 9 C 0.10 0.90 4.56 -5.19 -0.02 0.88 16 10 C 0.51 5.83 7.68 -10.99 -0.08 5.75 16 11 O -0.54 -7.08 11.08 5.56 0.06 -7.02 16 12 N -0.59 -7.08 2.97 -165.16 -0.49 -7.58 16 13 C 0.10 1.16 6.33 -3.67 -0.02 1.13 16 14 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 15 C 0.18 3.20 2.73 -67.89 -0.19 3.01 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 N -0.72 -17.10 5.12 -53.38 -0.27 -17.37 16 18 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.14 -2.09 4.84 -26.61 -0.13 -2.22 16 27 C 0.15 1.89 3.49 -67.59 -0.24 1.66 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 C -0.13 -1.71 7.60 37.16 0.28 -1.43 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.41 2.69 7.44 -40.82 -0.30 2.39 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.42 3.30 7.44 -40.82 -0.30 2.99 16 37 H 0.10 0.94 7.48 -51.93 -0.39 0.55 16 38 H 0.10 0.84 8.11 -51.92 -0.42 0.42 16 39 H 0.08 0.72 5.97 -51.93 -0.31 0.41 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 48 H 0.07 0.88 6.77 -51.93 -0.35 0.52 16 49 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -33.75 397.17 -7.93 -41.68 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.78 Total: 10.92 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.63 Total: 8.23 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.72 Total: -63.69 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.24 Total: -19.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.75 -7.93 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671232860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.216 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds