Wall clock time and date at job start Wed Apr 1 2020 00:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 C 1.47200 * 109.46793 * 180.02562 * 19 17 16 21 21 C 8.66358 * 75.96760 * 125.63069 * 2 1 3 22 22 C 8.81142 * 103.24184 * 183.76733 * 13 1 2 23 23 C 1.39545 * 120.13996 * 272.42470 * 22 21 20 24 24 C 1.37976 * 119.85266 * 179.79414 * 23 22 21 25 25 C 1.38344 * 120.14042 * 0.46387 * 24 23 22 26 26 C 1.38335 * 120.29030 * 359.79208 * 25 24 23 27 27 C 1.37977 * 120.14442 * 359.97097 * 26 25 24 28 28 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 29 29 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 34 34 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 36 36 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 37 37 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 38 38 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 39 39 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 40 40 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 41 41 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 42 42 H 1.07997 * 120.06991 * 0.02562 * 23 22 21 43 43 H 1.07995 * 119.92517 * 180.25124 * 24 23 22 44 44 H 1.08005 * 119.85149 * 179.76454 * 25 24 23 45 45 H 1.07998 * 119.93261 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.07136 * 179.97438 * 27 26 25 47 47 H 1.09005 * 109.58831 * 293.82980 * 28 16 15 48 48 H 1.08999 * 109.70287 * 173.47071 * 28 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 29 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 3.7294 1.3878 -4.9468 11 1 3.2759 -0.6541 -6.1744 12 1 1.4488 0.8028 -5.5277 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 6 -0.0112 -4.5769 5.8501 21 6 -0.5707 -4.8964 6.8315 22 6 -1.2535 -5.2861 8.0284 23 6 -0.7376 -4.9329 9.2760 24 6 -1.4026 -5.3078 10.4253 25 6 -2.5732 -6.0405 10.3429 26 6 -3.0870 -6.3984 9.1094 27 6 -2.4343 -6.0256 7.9523 28 6 2.0706 -0.7041 3.7469 29 6 1.5298 0.0003 2.4986 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.2335 -2.3998 -4.2459 35 1 3.1300 -0.7208 1.2493 36 1 0.4414 -2.1662 1.2732 37 1 1.8756 -2.6711 0.3465 38 1 3.1571 -2.9723 2.4136 39 1 1.6341 -3.8900 2.5391 40 1 0.0410 -4.3411 3.7608 41 1 1.5978 -4.7713 4.5088 42 1 0.1781 -4.3642 9.3416 43 1 -1.0066 -5.0316 11.3913 44 1 -3.0879 -6.3348 11.2457 45 1 -4.0010 -6.9708 9.0518 46 1 -2.8363 -6.3059 6.9899 47 1 3.1555 -0.6043 3.7815 48 1 1.6337 -0.2543 4.6384 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691692263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:34 Heat of formation + Delta-G solvation = 41.908490 kcal Electronic energy + Delta-G solvation = -27882.616534 eV Core-core repulsion = 24068.780483 eV Total energy + Delta-G solvation = -3813.836050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.33594 -39.42062 -38.12574 -35.45045 -34.57121 -33.03889 -32.07255 -31.29364 -30.97868 -30.56760 -28.73915 -27.97201 -25.31526 -23.89978 -23.25984 -23.08620 -22.83436 -21.61088 -19.81226 -18.60881 -18.29022 -17.44395 -17.02593 -16.59101 -15.97107 -15.79309 -15.28850 -14.93819 -14.84674 -14.40782 -14.18289 -14.03169 -13.84216 -13.78764 -13.68858 -13.53429 -13.34707 -13.01548 -12.78230 -12.56480 -12.18644 -11.96119 -11.77084 -11.62889 -11.58308 -11.39787 -11.12175 -11.04856 -10.84690 -10.61333 -10.36283 -10.35851 -10.29498 -10.13692 -9.87333 -9.67488 -9.55705 -9.31631 -8.91740 -8.73257 -8.64288 -6.96583 -5.78496 -3.06109 0.62141 1.04595 2.31613 2.47311 2.65981 3.05276 3.42633 3.47532 3.47951 3.69550 3.80678 4.44116 4.57331 4.60786 4.61707 4.74060 4.81700 4.96482 5.02381 5.05283 5.06731 5.12367 5.17380 5.19278 5.24442 5.36912 5.45785 5.54026 5.62620 5.67269 5.70130 5.78604 5.80654 5.95422 5.97123 6.06988 6.10717 6.13412 6.18212 6.18942 6.25216 6.29566 6.46069 6.54130 6.59292 6.65764 6.74782 6.91135 7.14350 7.26282 7.40248 7.69062 8.05594 8.41298 9.52320 10.10581 10.45096 11.44359 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.001666 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.040509 B =16806.975406 C =17192.343110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.130 4.130 15 C 0.103 3.897 16 N -0.606 5.606 17 C 0.518 3.482 18 O -0.539 6.539 19 C -0.026 4.026 20 C -0.132 4.132 21 C -0.136 4.136 22 C 0.023 3.977 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.099 4.099 28 C 0.113 3.887 29 C -0.128 4.128 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -8.494 24.445 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.168 4.168 15 C -0.020 4.020 16 N -0.340 5.340 17 C 0.305 3.695 18 O -0.416 6.416 19 C -0.065 4.065 20 C -0.133 4.133 21 C -0.136 4.136 22 C 0.023 3.977 23 C -0.113 4.113 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.117 4.117 28 C -0.009 4.009 29 C -0.167 4.167 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.092 0.908 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.046 -8.027 24.809 27.010 hybrid contribution 0.178 0.162 -1.211 1.235 sum -6.868 -7.864 23.598 25.805 Atomic orbital electron populations 1.22533 0.99599 1.00802 0.99754 1.20195 0.91727 0.95222 0.86106 0.93628 1.42474 1.78186 1.10753 1.05216 1.19209 1.36414 0.93844 0.87320 0.91354 1.24703 1.02337 0.95973 0.97957 1.69636 1.51244 1.08595 1.28885 0.86294 0.77746 0.78611 0.83693 1.21334 1.21744 1.21375 1.21385 1.00383 0.94498 0.94651 1.21999 1.01321 0.96397 0.97073 1.21943 1.00767 0.94873 0.84393 1.48130 1.56981 1.11251 1.17588 1.20258 0.77672 0.88844 0.82716 1.90714 1.53909 1.65499 1.31499 1.18696 1.00989 0.94128 0.92716 1.21207 0.98136 0.98902 0.95037 1.18987 0.99733 1.01017 0.93848 1.15893 0.94309 0.98928 0.88540 1.21286 0.99954 0.98932 0.91144 1.21104 0.95714 0.98661 0.98273 1.21275 0.96174 0.98070 0.97831 1.21089 1.00116 1.00399 0.92206 1.21257 0.94134 0.97223 0.99066 1.21639 0.99815 0.79864 0.99609 1.22016 1.01545 0.99361 0.93777 0.93162 0.93366 0.94420 0.78214 0.93541 0.91003 0.91284 0.89416 0.90807 0.89912 0.86127 0.86253 0.85487 0.85523 0.85790 0.85532 0.85560 0.91503 0.89340 0.90758 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.79 37.16 0.33 -2.57 16 2 C 0.18 3.29 2.72 -67.93 -0.18 3.10 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.06 5.04 -53.43 -0.27 -17.33 16 5 C -0.24 -6.37 9.93 -15.06 -0.15 -6.51 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 9 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.51 16 14 C -0.13 -1.73 4.81 -26.61 -0.13 -1.86 16 15 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 16 N -0.61 -7.13 2.97 -172.77 -0.51 -7.64 16 17 C 0.52 6.68 7.68 -10.98 -0.08 6.60 16 18 O -0.54 -9.07 15.45 5.55 0.09 -8.98 16 19 C -0.03 -0.26 4.54 -30.67 -0.14 -0.40 16 20 C -0.13 -1.64 12.58 -37.12 -0.47 -2.11 16 21 C -0.14 -1.73 13.24 -38.84 -0.51 -2.25 16 22 C 0.02 0.26 5.72 -107.00 -0.61 -0.35 16 23 C -0.10 -0.94 9.75 -39.19 -0.38 -1.32 16 24 C -0.12 -0.93 10.03 -39.64 -0.40 -1.32 16 25 C -0.12 -0.81 10.04 -39.51 -0.40 -1.21 16 26 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 27 C -0.10 -0.91 9.75 -39.19 -0.38 -1.29 16 28 C 0.11 1.35 6.43 -3.71 -0.02 1.33 16 29 C -0.13 -1.61 4.96 -26.62 -0.13 -1.75 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.83 6.46 -51.93 -0.34 0.50 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 33 H 0.38 9.39 6.04 -40.82 -0.25 9.14 16 34 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 37 H 0.09 1.35 6.46 -51.93 -0.34 1.01 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 40 H 0.12 0.92 7.69 -51.93 -0.40 0.52 16 41 H 0.12 0.84 7.94 -51.93 -0.41 0.43 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.92 6.51 -51.93 -0.34 0.59 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -33.25 404.62 -10.88 -44.14 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.61 Total: 7.46 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -4.38 Total: -14.15 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.06 Total: -51.55 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.25 -10.88 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691692263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.047 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds