Wall clock time and date at job start Wed Apr 1 2020 00:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00233 * 2 1 4 4 N 1.34777 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00302 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.47308 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99972 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00296 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.62811 * 354.67786 * 8 6 5 10 10 C 1.52761 * 109.00526 * 233.57874 * 9 8 6 11 11 C 1.53039 * 109.38094 * 305.58710 * 10 9 8 12 12 H 1.08999 * 109.46218 * 301.21824 * 11 10 9 13 13 N 1.46901 * 109.45685 * 181.26001 * 11 10 9 14 14 C 1.46897 * 111.00198 * 84.93035 * 13 11 10 15 15 C 1.50701 * 109.47396 * 179.97438 * 14 13 11 16 16 O 1.21289 * 120.00032 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99878 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99745 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00293 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99653 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99498 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47539 * 60.00077 * 22 20 18 24 24 H 1.48508 * 109.46815 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47304 * 299.99334 * 22 20 18 26 26 C 1.53034 * 109.53799 * 61.24191 * 11 10 9 27 27 C 1.46919 * 120.63093 * 174.94578 * 8 6 5 28 28 H 1.09005 * 109.58946 * 246.30368 * 27 8 6 29 29 C 1.52999 * 109.58915 * 6.58763 * 27 8 6 30 30 H 1.09005 * 109.46885 * 269.99162 * 1 2 3 31 31 H 1.08995 * 109.47248 * 29.99088 * 1 2 3 32 32 H 1.08997 * 109.47097 * 149.99965 * 1 2 3 33 33 H 0.97007 * 119.99862 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.46988 * 300.00159 * 5 4 2 35 35 H 1.08999 * 109.46746 * 60.00127 * 5 4 2 36 36 H 1.09002 * 109.58377 * 353.40886 * 9 8 6 37 37 H 1.08990 * 109.59072 * 113.83954 * 9 8 6 38 38 H 1.08997 * 109.56555 * 185.54927 * 10 9 8 39 39 H 1.09006 * 109.38907 * 65.51176 * 10 9 8 40 40 H 1.00906 * 111.00271 * 208.88478 * 13 11 10 41 41 H 1.09002 * 109.47307 * 300.00491 * 14 13 11 42 42 H 1.09009 * 109.47032 * 59.99576 * 14 13 11 43 43 H 0.96995 * 119.99769 * 0.02562 * 17 15 14 44 44 H 0.97002 * 119.99768 * 180.02562 * 21 20 18 45 45 H 1.09008 * 109.49738 * 178.67787 * 26 11 10 46 46 H 1.09003 * 109.53192 * 58.60239 * 26 11 10 47 47 H 1.09003 * 109.47091 * 55.67382 * 29 27 8 48 48 H 1.08994 * 109.47215 * 175.66715 * 29 27 8 49 49 H 1.08998 * 109.46944 * 295.67217 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1483 -2.5880 -0.0010 7 8 3.3601 -3.5099 -0.0009 8 7 5.4733 -2.8343 -0.0019 9 6 6.4393 -1.7335 -0.1204 10 6 7.3917 -2.0298 -1.2775 11 6 8.0286 -3.4060 -1.0714 12 1 8.5646 -3.4196 -0.1224 13 7 8.9676 -3.6797 -2.1674 14 6 10.2864 -3.0956 -1.8892 15 6 11.2207 -3.3968 -3.0326 16 8 10.8266 -4.0349 -3.9858 17 7 12.4940 -2.9563 -2.9964 18 6 13.3437 -3.2299 -4.0369 19 1 12.9928 -3.7981 -4.8857 20 6 14.6565 -2.7762 -3.9993 21 7 15.0834 -2.0844 -2.9668 22 14 15.8142 -3.1484 -5.4173 23 1 15.2683 -2.5640 -6.6686 24 1 17.1473 -2.5575 -5.1361 25 1 15.9473 -4.6190 -5.5748 26 6 6.9367 -4.4781 -1.0557 27 6 5.9792 -4.2092 0.1095 28 1 6.5084 -4.3284 1.0550 29 6 4.8089 -5.1929 0.0493 30 1 -0.3633 -0.0002 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6959 -2.0073 -0.0005 34 1 4.0089 -0.6532 -0.8911 35 1 4.0095 -0.6536 0.8889 36 1 5.9088 -0.8014 -0.3151 37 1 7.0088 -1.6460 0.8047 38 1 8.1717 -1.2693 -1.3120 39 1 6.8354 -2.0231 -2.2149 40 1 9.0406 -4.6708 -2.3420 41 1 10.1887 -2.0161 -1.7740 42 1 10.6870 -3.5241 -0.9704 43 1 12.8090 -2.4457 -2.2343 44 1 15.9997 -1.7674 -2.9408 45 1 7.3931 -5.4604 -0.9324 46 1 6.3841 -4.4492 -1.9948 47 1 4.2386 -5.0235 -0.8641 48 1 5.1915 -6.2135 0.0546 49 1 4.1629 -5.0424 0.9142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699729793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:48 Heat of formation + Delta-G solvation = -122.015708 kcal Electronic energy + Delta-G solvation = -29532.074340 eV Core-core repulsion = 25300.280740 eV Total energy + Delta-G solvation = -4231.793600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84022 -40.51368 -40.14475 -38.87928 -36.42843 -35.79966 -35.66464 -33.93714 -33.28375 -32.30509 -31.23476 -29.16936 -27.81307 -27.64431 -25.87143 -24.70463 -23.14022 -21.63069 -21.58981 -21.09322 -20.22288 -19.87804 -18.36024 -17.90858 -17.63951 -17.22638 -16.98480 -16.87521 -16.52848 -16.41409 -16.23359 -15.95657 -15.51002 -15.38484 -14.95581 -14.87786 -14.63113 -14.42377 -14.06971 -13.79369 -13.73492 -13.51761 -13.39379 -13.35177 -13.29950 -13.20062 -12.92927 -12.89746 -12.67963 -12.57308 -12.43028 -12.12550 -12.05747 -11.75420 -11.50221 -11.45645 -11.08304 -10.34113 -10.26734 -10.23463 -10.01474 -9.68318 -9.32035 -8.46593 -5.95263 1.39723 1.41853 1.42288 1.52508 1.60549 1.67419 2.05902 2.29065 2.36301 2.88208 3.20831 3.29745 3.48022 3.73399 3.77383 3.93311 3.99918 4.14923 4.23397 4.26455 4.29558 4.32450 4.43940 4.46348 4.52318 4.53456 4.54041 4.59755 4.67819 4.71640 4.77225 4.89968 4.96784 5.03652 5.07957 5.20609 5.26777 5.34935 5.35927 5.40996 5.61989 5.91537 6.13664 6.29040 6.40709 6.48232 6.60591 6.99379 7.12863 7.17917 7.56779 8.12376 8.70372 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021082 B = 0.001818 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.854103 B =15398.803404 C =16204.138054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.715 5.715 5 C 0.096 3.904 6 C 0.513 3.487 7 O -0.554 6.554 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.123 4.123 11 C 0.089 3.911 12 H 0.061 0.939 13 N -0.681 5.681 14 C 0.067 3.933 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.125 4.125 27 C 0.150 3.850 28 H 0.092 0.908 29 C -0.127 4.127 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.418 0.582 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.344 0.656 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.859 1.147 13.689 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.477 6.477 4 N -0.370 5.370 5 C -0.031 4.031 6 C 0.301 3.699 7 O -0.433 6.433 8 N -0.333 5.333 9 C -0.015 4.015 10 C -0.162 4.162 11 C -0.020 4.020 12 H 0.079 0.921 13 N -0.313 5.313 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.164 4.164 27 C 0.047 3.953 28 H 0.110 0.890 29 C -0.184 4.184 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.257 0.743 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.164 0.836 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.102 1.576 12.727 28.188 hybrid contribution 1.347 -0.841 0.026 1.588 sum -23.755 0.735 12.753 26.972 Atomic orbital electron populations 1.21898 0.87944 1.06194 1.06363 1.21570 0.92342 0.82289 0.74095 1.90721 1.72020 1.32955 1.52032 1.45897 1.06001 1.10157 1.74988 1.21183 0.82709 0.94021 1.05190 1.20592 0.82494 0.91028 0.75749 1.90757 1.56161 1.45210 1.51195 1.48167 1.05203 1.08442 1.71531 1.21918 0.90835 0.89222 0.99564 1.21847 0.98889 0.96925 0.98526 1.21590 0.92355 0.95735 0.92326 0.92063 1.60100 1.08029 1.20089 1.43104 1.21571 0.88603 1.02095 0.94213 1.20955 0.83151 0.83554 0.89972 1.90494 1.76941 1.45647 1.38111 1.41925 1.09426 1.49239 1.20398 1.19623 0.92524 1.34202 1.00214 0.90435 1.26010 0.98552 0.96011 1.00568 1.69656 1.18788 1.36732 1.30765 0.85009 0.77091 0.78610 0.77744 1.19870 1.19440 1.19713 1.22123 0.96398 0.98925 0.98958 1.21331 0.95077 0.80577 0.98330 0.89045 1.22069 0.96114 0.96961 1.03253 0.86985 0.88624 0.87841 0.74344 0.88299 0.87509 0.87792 0.88605 0.89932 0.92408 0.83644 0.87714 0.91446 0.76921 0.91285 0.89917 0.92179 0.92832 0.92694 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.30 71.24 0.73 -0.46 16 2 C 0.51 8.19 7.94 87.66 0.70 8.88 16 3 O -0.60 -15.07 17.10 -3.03 -0.05 -15.12 16 4 N -0.71 -10.09 5.53 -466.79 -2.58 -12.67 16 5 C 0.10 1.38 4.56 85.63 0.39 1.77 16 6 C 0.51 8.55 7.67 87.66 0.67 9.23 16 7 O -0.55 -11.50 11.07 -3.05 -0.03 -11.53 16 8 N -0.60 -9.04 2.98 -795.86 -2.37 -11.41 16 9 C 0.11 1.29 6.30 86.22 0.54 1.83 16 10 C -0.12 -2.19 5.57 30.53 0.17 -2.02 16 11 C 0.09 1.79 2.46 44.94 0.11 1.90 16 12 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 13 N -0.68 -19.96 5.93 -495.44 -2.94 -22.90 16 14 C 0.07 2.16 5.96 85.56 0.51 2.67 16 15 C 0.44 20.33 7.82 87.66 0.69 21.01 16 16 O -0.63 -34.44 15.78 -3.06 -0.05 -34.49 16 17 N -0.57 -28.94 5.29 -306.98 -1.62 -30.57 16 18 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 22 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.13 -2.31 4.65 30.67 0.14 -2.17 16 27 C 0.15 2.37 3.49 44.98 0.16 2.52 16 28 H 0.09 1.19 8.14 -2.38 -0.02 1.18 16 29 C -0.13 -2.26 7.59 71.98 0.55 -1.71 16 30 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.42 5.03 7.44 -92.70 -0.69 4.34 16 34 H 0.10 1.45 7.47 -2.39 -0.02 1.43 16 35 H 0.11 1.36 8.12 -2.39 -0.02 1.34 16 36 H 0.10 0.98 5.96 -2.39 -0.01 0.96 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 39 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.34 10.83 8.03 -89.69 -0.72 10.11 16 41 H 0.10 2.99 7.41 -2.39 -0.02 2.97 16 42 H 0.07 1.87 8.06 -2.38 -0.02 1.85 16 43 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 44 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.17 6.73 -2.39 -0.02 1.16 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.06 1.24 6.77 -2.39 -0.02 1.22 16 Total: -1.00 -75.64 394.90 -1.84 -77.49 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -1.14 Total: 40.02 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 6.64 Total: 25.16 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -9.23 Total: -126.26 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.13 Total: -61.14 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.64 -1.84 -77.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699729793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.530 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds