Wall clock time and date at job start Wed Apr 1 2020 00:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47353 * 2 1 4 4 O 1.21284 * 120.00096 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99838 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00072 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47289 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.47018 * 125.64933 * 359.69560 * 9 7 6 11 11 C 1.54338 * 107.26735 * 178.84748 * 10 9 7 12 12 C 1.55158 * 103.01841 * 338.13891 * 11 10 9 13 13 H 1.08998 * 111.00419 * 277.23193 * 12 11 10 14 14 C 1.53001 * 111.03802 * 153.39398 * 12 11 10 15 15 N 1.46894 * 109.47119 * 72.78500 * 14 12 11 16 16 C 1.46897 * 111.00052 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46883 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00472 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00173 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99363 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00178 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99927 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00128 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46888 * 89.99704 * 24 22 20 26 26 H 1.48494 * 109.47127 * 209.99784 * 24 22 20 27 27 H 1.48503 * 109.46939 * 329.99985 * 24 22 20 28 28 C 1.47429 * 125.64704 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46524 * 299.99867 * 1 2 3 30 30 H 1.08992 * 109.46876 * 59.99534 * 1 2 3 31 31 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46832 * 240.00132 * 2 1 3 33 33 H 1.09001 * 109.47420 * 120.00571 * 2 1 3 34 34 H 0.97001 * 120.00676 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.47060 * 300.00359 * 6 5 3 36 36 H 1.09004 * 109.47073 * 59.99848 * 6 5 3 37 37 H 1.09005 * 109.88268 * 298.39285 * 10 9 7 38 38 H 1.09003 * 109.88258 * 59.55834 * 10 9 7 39 39 H 1.08999 * 110.85174 * 219.67197 * 11 10 9 40 40 H 1.08997 * 110.51466 * 96.44756 * 11 10 9 41 41 H 1.09002 * 109.47367 * 192.78703 * 14 12 11 42 42 H 1.08996 * 109.46735 * 312.78565 * 14 12 11 43 43 H 1.00905 * 110.99952 * 303.96055 * 15 14 12 44 44 H 1.09003 * 109.47348 * 299.99498 * 16 15 14 45 45 H 1.09002 * 109.47389 * 59.99986 * 16 15 14 46 46 H 0.97004 * 120.00109 * 0.02562 * 19 17 16 47 47 H 0.97003 * 119.99969 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36242 * 322.93389 * 28 9 7 49 49 H 1.09001 * 110.36419 * 85.14571 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8460 3.0482 0.0000 7 6 5.3530 3.0481 -0.0001 8 8 5.9593 1.9977 -0.0011 9 7 6.0269 4.2153 -0.0001 10 6 5.4207 5.5547 -0.0064 11 6 6.5741 6.5796 0.0257 12 6 7.7542 5.7597 0.6111 13 1 7.7045 5.7260 1.6994 14 6 9.0984 6.3211 0.1434 15 7 9.3659 7.5900 0.8335 16 6 10.6512 8.1599 0.4080 17 6 10.8902 9.4582 1.1350 18 8 10.0708 9.8681 1.9297 19 7 12.0152 10.1633 0.9027 20 6 12.2325 11.3447 1.5637 21 1 11.5024 11.7100 2.2707 22 6 13.3919 12.0718 1.3239 23 7 13.6004 13.2039 1.9578 24 14 14.6543 11.4403 0.1004 25 1 14.3403 11.9679 -1.2517 26 1 16.0082 11.8949 0.5070 27 1 14.6179 9.9559 0.0733 28 6 7.4940 4.3603 0.0003 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9879 0.9297 -0.0005 35 1 3.4822 3.5626 -0.8894 36 1 3.4831 3.5615 0.8905 37 1 4.8279 5.6890 -0.9113 38 1 4.7907 5.6806 0.8741 39 1 6.3286 7.4198 0.6752 40 1 6.8067 6.9247 -0.9817 41 1 9.8900 5.6082 0.3741 42 1 9.0660 6.4924 -0.9325 43 1 8.6135 8.2464 0.6877 44 1 11.4538 7.4599 0.6403 45 1 10.6292 8.3441 -0.6662 46 1 12.6707 9.8353 0.2674 47 1 14.4097 13.7118 1.7901 48 1 7.9515 3.5863 0.6165 49 1 7.8803 4.3113 -1.0178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752933263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:53 Heat of formation + Delta-G solvation = -136.388005 kcal Electronic energy + Delta-G solvation = -28253.603379 eV Core-core repulsion = 24021.186549 eV Total energy + Delta-G solvation = -4232.416830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50853 -40.56851 -40.25734 -38.96675 -36.67372 -35.85104 -35.57926 -33.77070 -33.72326 -33.06945 -30.54012 -29.73861 -28.38011 -26.39681 -25.08888 -24.13648 -23.93763 -21.46450 -21.42050 -21.17412 -20.46682 -20.22602 -18.70758 -18.08867 -17.61223 -17.50261 -17.17630 -17.09599 -16.63247 -16.53941 -16.10884 -15.76280 -15.65506 -15.13424 -15.03200 -14.72441 -14.67664 -14.56575 -14.37943 -14.20662 -13.76618 -13.74564 -13.48703 -13.41113 -13.29685 -13.15729 -13.00069 -12.70651 -12.63917 -12.40490 -12.11884 -12.02918 -11.96315 -11.68295 -11.62383 -11.49807 -11.20467 -11.02631 -10.42354 -10.29052 -10.23743 -9.79216 -9.29576 -8.40349 -6.01341 1.31452 1.34913 1.36465 1.45684 1.58140 1.58674 1.97602 2.24063 2.30263 2.73524 3.16571 3.21098 3.40968 3.56563 3.73314 3.79877 3.96975 4.17063 4.19253 4.20531 4.27290 4.29049 4.31078 4.35655 4.41642 4.46687 4.56705 4.60386 4.73316 4.74968 4.77532 4.89114 4.96335 5.00629 5.06684 5.10294 5.17429 5.20526 5.35628 5.38264 5.53764 5.91902 6.06669 6.30520 6.42837 6.43960 6.61052 6.86099 6.89435 7.14849 7.41367 7.98063 8.77331 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.043491 B = 0.001395 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.659369 B =20070.310211 C =20482.919032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.510 3.490 4 O -0.583 6.583 5 N -0.718 5.718 6 C 0.107 3.893 7 C 0.525 3.475 8 O -0.572 6.572 9 N -0.612 5.612 10 C 0.095 3.905 11 C -0.129 4.129 12 C -0.092 4.092 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.687 5.687 16 C 0.062 3.938 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.115 3.885 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.346 0.654 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.071 0.929 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 -28.287 -11.723 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.298 3.702 4 O -0.463 6.463 5 N -0.374 5.374 6 C -0.020 4.020 7 C 0.314 3.686 8 O -0.453 6.453 9 N -0.345 5.345 10 C -0.027 4.027 11 C -0.167 4.167 12 C -0.111 4.111 13 H 0.100 0.900 14 C -0.054 4.054 15 N -0.320 5.320 16 C -0.070 4.070 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.256 0.744 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.165 0.835 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.559 -28.097 -10.591 35.300 hybrid contribution 1.043 0.674 -0.904 1.536 sum -17.517 -27.423 -11.495 34.511 Atomic orbital electron populations 1.21542 0.93314 1.02688 1.01988 1.21698 0.98197 0.91190 1.06687 1.21486 0.81130 0.93246 0.74302 1.90703 1.56190 1.48056 1.51358 1.45843 1.07816 1.08295 1.75415 1.21026 0.89443 0.86079 1.05480 1.20344 0.90010 0.82435 0.75824 1.90691 1.70623 1.31566 1.52374 1.48459 1.08090 1.06211 1.71765 1.22330 0.96753 0.79995 1.03637 1.22770 0.93500 0.97573 1.02816 1.22244 0.94534 0.93378 1.00970 0.89961 1.21892 0.96639 0.90732 0.96179 1.60014 1.03612 1.06901 1.61493 1.21626 0.94892 0.92658 0.97845 1.21052 0.82182 0.87656 0.85559 1.90545 1.47133 1.72458 1.39776 1.42043 1.20147 1.20794 1.40341 1.19021 1.06142 0.98247 1.22502 0.92685 1.26105 0.99678 0.95492 0.99989 1.69807 1.28494 1.15644 1.43646 0.85372 0.77356 0.80531 0.78309 1.18083 1.20204 1.15363 1.22226 0.79747 0.97080 1.01701 0.93451 0.93338 0.89730 0.86481 0.86609 0.74429 0.87504 0.87884 0.89020 0.89943 0.89329 0.89374 0.89942 0.93003 0.83456 0.86943 0.90236 0.77443 0.91180 0.91064 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 71.98 0.66 -0.67 16 2 C -0.14 -1.08 6.42 29.85 0.19 -0.89 16 3 C 0.51 7.84 7.83 87.66 0.69 8.53 16 4 O -0.58 -13.66 15.98 -3.04 -0.05 -13.71 16 5 N -0.72 -9.82 5.53 -466.77 -2.58 -12.40 16 6 C 0.11 1.46 5.35 85.63 0.46 1.92 16 7 C 0.52 8.91 7.92 87.66 0.69 9.61 16 8 O -0.57 -13.17 15.92 -3.03 -0.05 -13.22 16 9 N -0.61 -8.88 3.33 -811.79 -2.70 -11.58 16 10 C 0.09 0.97 6.49 86.73 0.56 1.53 16 11 C -0.13 -1.52 5.90 31.79 0.19 -1.34 16 12 C -0.09 -1.36 3.25 -9.41 -0.03 -1.39 16 13 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 14 C 0.07 1.23 5.19 86.30 0.45 1.68 16 15 N -0.69 -17.65 6.13 -517.94 -3.17 -20.82 16 16 C 0.06 1.72 6.17 85.56 0.53 2.25 16 17 C 0.45 19.42 7.82 87.66 0.69 20.11 16 18 O -0.61 -33.15 15.78 -3.07 -0.05 -33.20 16 19 N -0.59 -27.13 5.09 -306.97 -1.56 -28.69 16 20 C -0.33 -19.08 10.16 84.04 0.85 -18.23 16 21 H 0.06 3.81 7.39 -2.91 -0.02 3.78 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.94 -55.98 13.96 21.66 0.30 -55.67 16 24 Si 0.96 37.99 27.74 68.60 1.90 39.89 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 28 C 0.12 1.68 6.37 86.85 0.55 2.24 16 29 H 0.05 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.10 -2.39 -0.02 0.58 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.42 5.03 7.44 -92.71 -0.69 4.35 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.90 7.92 -2.39 -0.02 0.88 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 0.68 7.97 -2.39 -0.02 0.66 16 43 H 0.35 9.38 7.93 -89.69 -0.71 8.67 16 44 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.39 14.65 5.76 -92.71 -0.53 14.11 16 47 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 49 H 0.08 1.05 8.04 -2.39 -0.02 1.03 16 Total: -1.00 -84.45 406.43 -2.02 -86.48 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.01 Total: 37.88 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.95 Total: 25.04 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -9.71 Total: -129.17 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -0.15 Total: -60.13 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -84.45 -2.02 -86.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752933263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.913 kcal (2) G-P(sol) polarization free energy of solvation -84.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds